Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001095.1

Orthogroup ID

OG0002579

Physical Location & Seq

Genomic Coordinates Forward (+)

36997 .. 40679

Gene Structure 3683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001095.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

atgctgaccctgcgacgtcgtttcacctcgccttcttcgtgttcctcacatcgcattctctccgcactagctacagttctcgtgttaaacgctcttccggccgcctcggttttggcgccgagatccaattgctatgccttcgataactctagccgcctcgtcgattttagtagctggattggacatcattttgagtatgaggggaaggatgccgacttggttgttcgattttgcaaagatgtggagagcagatcacaaacggtagtccattacatagtcttccttgaacttgcgattccatgcgagaaaccaggtccacgagtatttaagggattcactgttggtttccacccccggtcatgggaacttgtttatgatggcatgactcaattgggctttgcaaagcctcaccatgaatttagcttcgggactcaacaaatacatgtaaccctttatatgactgcaattgcttcccagtccactttggtgcaaaaacctattgtcaaggtcttaccagaaaatggcctggaggttaggttatcagggtcaggagtaatagggagccctcctacaactttgtcacccacaatgttgaatattgattggagatgtaaaagaactcgtgatactccatatgaagttaatgtgactatcccaatagagggttatgagcctgtccagtttattcttgccaaaatgtgtgaatataggcaggatcaagatggcgacggtacaaaaggatgggctatatttggagtgttatcctgcatattcattgtgtcttcaactctgttttgttgtggagggtttatttacaagactcaagttatgggaaagcgtggtattgatgcattgcctggcatgacaattgtatctgcttacttagaaactgtgagtggagcagggcaaagctacagccgagcagaagatcttaatagttcctttaccagtgaagcttcttgggaacaccctcctgcttcttatcaaggaacgcagaggccagcaactgaaagaacatatggtgcaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

343

Amino Acids

37.95

Weight (kDa)

7.09

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36440
fragaria_vesca	FvH4_1g12510 FvH4_1g12510 FvH4_1g12510 FvH4_1g12510 FvH4_1g12510 FvH4_1g12510
malus_domestica	MD02G1139000.v1.1 MD15G1252400.v1.1
prunus_persica	Prupe.7G161800_v2.0.a1
pyrus_communis	pycom15g22230
rosa_chinensis	RchiOBHm_Chr2g0100411 RchiOBHm_Chr2g0136281
rosa_laevigata	RLG00000016971 RLG00000016995
rosa_multiflora	Rmu_sc0001095.1_g000010 Rmu_sc0005038.1_g000024 Rmu_sc0005093.1_g000022 Rmu_ssc0000008.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095660 Rroxscaffold_2G00142270 Rroxscaffold_3G00237860 Rroxscaffold_4G00320340 Rroxscaffold_7G00196390
rosa_rugosa	Rorug02G0087900 Rorug02G0088000 Rorug02G0088100
rosa_samantha	Rh2AG137400 Rh2AG137600 Rh2BG140600 Rh2BG140800 Rh2CG142700 Rh2DG142600 Rh3DG330200 Rh4AG080100 Rh4CG086200 Rh4CG256300 Rh5AG182400
rosa_wichuraiana	Rw2G010750 Rw7G016510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	19
AccB1I	GGYRCC	1 cut(s)	115
AccB7I	CCANNNNNTGG	1 cut(s)	521
AciI	CCGC	3 cut(s)	63, 102, 154
AclWI	GGATC	2 cut(s)	117, 723
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	416
AcyI	GRCGYC	2 cut(s)	16, 116
AfaI	GTAC	1 cut(s)	733
AfiI	CCNNNNNNNGG	5 cut(s)	360, 361, 521, 661, 662
AflIII	ACRYGT	1 cut(s)	442
AgsI	TTSAA	3 cut(s)	287, 595, 786
AjnI	CCWGG	3 cut(s)	310, 525, 856
AleI	CACNNNNGTG	1 cut(s)	485
AluBI	AGCT	5 cut(s)	71, 174, 423, 912, 956
AluI	AGCT	5 cut(s)	71, 174, 423, 912, 956
AlwI	GGATC	2 cut(s)	117, 723
AlwNI	CAGNNNCTG	1 cut(s)	1007
AoxI	GGCC	3 cut(s)	99, 523, 998
ApoI	RAATTY	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	314
AsuC2I	CCSGG	1 cut(s)	355
AsuHPI	GGTGA	3 cut(s)	16, 401, 573
AvaII	GGWCC	1 cut(s)	314
BaeI	ACNNNNGTAYC	2 cut(s)	855, 888
BanI	GGYRCC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	566
BauI	CACGAG	3 cut(s)	80, 318, 621
BbsI	GAAGAC	2 cut(s)	271, 774
BccI	CCATC	3 cut(s)	371, 716, 735
BciT130I	CCWGG	3 cut(s)	312, 527, 858
BcnI	CCSGG	1 cut(s)	355
BfaI	CTAG	2 cut(s)	68, 150
BfmI	CTRYAG	2 cut(s)	72, 913
BfoI	RGCGCY	1 cut(s)	119
BglII	AGATCT	1 cut(s)	928
BisI	GCNGC	2 cut(s)	102, 154
BlsI	GCNGC	2 cut(s)	103, 155
Bme1390I	CCNGG	4 cut(s)	312, 355, 527, 858
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	2 cut(s)	117, 563
BmrFI	CCNGG	4 cut(s)	312, 355, 527, 858
BmrI	ACTGGG	1 cut(s)	469
BmsI	GCATC	2 cut(s)	199, 838
BmuI	ACTGGG	1 cut(s)	469
BpiI	GAAGAC	2 cut(s)	271, 774
BpmI	CTGGAG	1 cut(s)	548
BpuEI	CTTGAG	1 cut(s)	807
BpuMI	CCSGG	1 cut(s)	355
BsaHI	GRCGYC	2 cut(s)	16, 116
BsaJI	CCNNGG	2 cut(s)	105, 353
BsaXI	ACNNNNNCTCC	2 cut(s)	521, 551
Bsc4I	CCNNNNNNNGG	5 cut(s)	360, 361, 521, 661, 662
Bse1I	ACTGG	3 cut(s)	475, 679, 948
Bse3DI	GCAATG	1 cut(s)	851
BseBI	CCWGG	3 cut(s)	312, 527, 858
BseDI	CCNNGG	2 cut(s)	105, 353
BseGI	GGATG	2 cut(s)	214, 746
BseLI	CCNNNNNNNGG	5 cut(s)	360, 361, 521, 661, 662
BseMI	GCAATG	1 cut(s)	851
BseNI	ACTGG	3 cut(s)	475, 679, 948
BseX3I	CGGCCG	1 cut(s)	99
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	3 cut(s)	101, 525, 1000
BshNI	GGYRCC	1 cut(s)	115
BsiEI	CGRYCG	1 cut(s)	102
BsiSI	CCGG	2 cut(s)	98, 355
BslFI	GGGAC	1 cut(s)	442
BslI	CCNNNNNNNGG	5 cut(s)	360, 361, 521, 661, 662
BsmFI	GGGAC	1 cut(s)	442
BsmI	GAATGC	1 cut(s)	54
BsnI	GGCC	3 cut(s)	101, 525, 1000
Bsp1286I	GDGCHC	1 cut(s)	566
Bsp143I	GATC	4 cut(s)	122, 251, 715, 928
BspACI	CCGC	3 cut(s)	63, 102, 154
BspANI	GGCC	3 cut(s)	101, 525, 1000
BspLI	GGNNCC	2 cut(s)	117, 563
BspPI	GGATC	2 cut(s)	117, 723
BspQI	GCTCTTC	1 cut(s)	99
BspT107I	GGYRCC	1 cut(s)	115
BsrDI	GCAATG	1 cut(s)	851
BsrI	ACTGG	3 cut(s)	475, 679, 948
BssECI	CCNNGG	2 cut(s)	105, 353
BssMI	GATC	4 cut(s)	122, 251, 715, 928
BssNI	GRCGYC	2 cut(s)	16, 116
BssSI	CACGAG	3 cut(s)	80, 318, 621
Bst2BI	CACGAG	3 cut(s)	80, 318, 621
Bst2UI	CCWGG	3 cut(s)	312, 527, 858
Bst4CI	ACNGT	5 cut(s)	76, 262, 340, 731, 892
Bst6I	CTCTTC	1 cut(s)	99
BstACI	GRCGYC	2 cut(s)	16, 116
BstC8I	GCNNGC	1 cut(s)	1002
BstDEI	CTNAG	1 cut(s)	883
BstF5I	GGATG	2 cut(s)	214, 746
BstH2I	RGCGCY	1 cut(s)	119
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	4 cut(s)	125, 254, 718, 931
BstMBI	GATC	4 cut(s)	122, 251, 715, 928
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 98
BstNI	CCWGG	3 cut(s)	312, 527, 858
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	4 cut(s)	310, 353, 525, 856
BstSFI	CTRYAG	2 cut(s)	72, 913
BstV2I	GAAGAC	2 cut(s)	271, 774
BstX2I	RGATCY	2 cut(s)	122, 928
BstYI	RGATCY	2 cut(s)	122, 928
BstZI	CGGCCG	1 cut(s)	99
BsuRI	GGCC	3 cut(s)	101, 525, 1000
BtgZI	GCGATG	1 cut(s)	35
BtsCI	GGATG	2 cut(s)	214, 746
BtsIMutI	CAGTG	2 cut(s)	336, 955
Cac8I	GCNNGC	1 cut(s)	1002
CaiI	CAGNNNCTG	1 cut(s)	1007
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	314
CsiI	ACCWGGT	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	732
CviAII	CATG	6 cut(s)	300, 360, 382, 413, 443, 862
CviQI	GTAC	1 cut(s)	732
DdeI	CTNAG	1 cut(s)	883
DinI	GGCGCC	1 cut(s)	117
DpnI	GATC	4 cut(s)	124, 253, 717, 930
DpnII	GATC	4 cut(s)	122, 251, 715, 928
EaeI	YGGCCR	1 cut(s)	99
EagI	CGGCCG	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
EclXI	CGGCCG	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	314
Eco52I	CGGCCG	1 cut(s)	99
EcoRII	CCWGG	3 cut(s)	310, 525, 856
EcoT22I	ATGCAT	1 cut(s)	853
EcoT38I	GRGCYC	1 cut(s)	566
EgeI	GGCGCC	1 cut(s)	117
EheI	GGCGCC	1 cut(s)	117
FaeI	CATG	6 cut(s)	303, 363, 385, 416, 446, 865
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	6 cut(s)	299, 359, 381, 412, 442, 861
FauNDI	CATATG	2 cut(s)	634, 1018
Fnu4HI	GCNGC	2 cut(s)	102, 154
FokI	GGATG	2 cut(s)	221, 753
FriOI	GRGCYC	1 cut(s)	566
Fsp4HI	GCNGC	2 cut(s)	102, 154
FspBI	CTAG	2 cut(s)	68, 150
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	2 cut(s)	102, 154
GsuI	CTGGAG	1 cut(s)	548
HaeII	RGCGCY	1 cut(s)	119
HaeIII	GGCC	3 cut(s)	101, 525, 1000
HapII	CCGG	2 cut(s)	98, 355
HhaI	GCGC	1 cut(s)	118
Hin1I	GRCGYC	2 cut(s)	16, 116
Hin1II	CATG	6 cut(s)	303, 363, 385, 416, 446, 865
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HindIII	AAGCTT	1 cut(s)	954
HinfI	GANTC	5 cut(s)	295, 333, 385, 430, 820
HpaII	CCGG	2 cut(s)	98, 355
HphI	GGTGA	3 cut(s)	16, 401, 573
Hpy166II	GTNNAC	2 cut(s)	317, 480
Hpy188III	TCNNGA	4 cut(s)	427, 549, 623, 719
Hpy8I	GTNNAC	2 cut(s)	317, 480
Hpy99I	CGWCG	4 cut(s)	18, 21, 164, 731
HpyAV	CCTTC	3 cut(s)	42, 148, 199
HpyCH4III	ACNGT	5 cut(s)	76, 262, 340, 731, 892
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	7 cut(s)	234, 401, 464, 490, 768, 851, 1025
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 98
HpyF3I	CTNAG	1 cut(s)	883
HpySE526I	ACGT	1 cut(s)	16
Hsp92I	GRCGYC	2 cut(s)	16, 116
Hsp92II	CATG	6 cut(s)	303, 363, 385, 416, 446, 865
HspAI	GCGC	1 cut(s)	116
KasI	GGCGCC	1 cut(s)	115
Kzo9I	GATC	4 cut(s)	122, 251, 715, 928
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	2 cut(s)	561, 899
LweI	GCATC	2 cut(s)	199, 838
MabI	ACCWGGT	1 cut(s)	310
MaeI	CTAG	2 cut(s)	68, 150
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	3 cut(s)	445, 579, 646
MalI	GATC	4 cut(s)	124, 253, 717, 930
MboI	GATC	4 cut(s)	122, 251, 715, 928
MboII	GAAGA	5 cut(s)	27, 86, 271, 774, 938
MfeI	CAATTG	4 cut(s)	127, 389, 465, 867
MflI	RGATCY	2 cut(s)	122, 928
MhlI	GDGCHC	1 cut(s)	566
MluCI	AATT	6 cut(s)	127, 389, 416, 465, 867, 1026
Mly113I	GGCGCC	1 cut(s)	116
MlyI	GAGTC	3 cut(s)	379, 424, 814
Mph1103I	ATGCAT	1 cut(s)	853
MseI	TTAA	4 cut(s)	86, 327, 642, 933
MslI	CAYNNNNRTG	1 cut(s)	485
MspI	CCGG	2 cut(s)	98, 355
MspR9I	CCNGG	4 cut(s)	312, 355, 527, 858
MunI	CAATTG	4 cut(s)	127, 389, 465, 867
Mva1269I	GAATGC	1 cut(s)	54
MvaI	CCWGG	3 cut(s)	312, 527, 858
MwoI	GCNNNNNNNGC	2 cut(s)	10, 98
NarI	GGCGCC	1 cut(s)	116
NciI	CCSGG	1 cut(s)	355
NdeI	CATATG	2 cut(s)	634, 1018
NdeII	GATC	4 cut(s)	122, 251, 715, 928
NlaIII	CATG	6 cut(s)	303, 363, 385, 416, 446, 865
NlaIV	GGNNCC	2 cut(s)	117, 563
NmeAIII	GCCGAG	2 cut(s)	144, 944
NmuCI	GTSAC	2 cut(s)	579, 646
NsiI	ATGCAT	1 cut(s)	853
NspI	RCATGY	1 cut(s)	446
OliI	CACNNNNGTG	1 cut(s)	485
PciI	ACATGT	1 cut(s)	442
PciSI	GCTCTTC	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PctI	GAATGC	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	295, 333
PflMI	CCANNNNNTGG	1 cut(s)	521
PkrI	GCNGC	2 cut(s)	103, 155
PleI	GAGTC	3 cut(s)	379, 424, 814
PluTI	GGCGCC	1 cut(s)	119
PpsI	GAGTC	3 cut(s)	379, 424, 814
PscI	ACATGT	1 cut(s)	442
Psp6I	CCWGG	3 cut(s)	310, 525, 856
PspGI	CCWGG	3 cut(s)	310, 525, 856
PspN4I	GGNNCC	2 cut(s)	117, 563
PspPI	GGNCC	1 cut(s)	314
PsrI	GAACNNNNNNTAC	2 cut(s)	610, 642
PstNI	CAGNNNCTG	1 cut(s)	1007
PsuI	RGATCY	2 cut(s)	122, 928
RsaI	GTAC	1 cut(s)	733
RsaNI	GTAC	1 cut(s)	732
RseI	CAYNNNNRTG	1 cut(s)	485
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	4 cut(s)	86, 327, 642, 933
SatI	GCNGC	2 cut(s)	102, 154
Sau3AI	GATC	4 cut(s)	122, 251, 715, 928
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	3 cut(s)	379, 424, 814
ScrFI	CCNGG	4 cut(s)	312, 355, 527, 858
SduI	GDGCHC	1 cut(s)	566
SexAI	ACCWGGT	1 cut(s)	310
SfaNI	GCATC	2 cut(s)	199, 838
SfcI	CTRYAG	2 cut(s)	72, 913
SfoI	GGCGCC	1 cut(s)	117
SinI	GGWCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	485
SmlI	CTYRAG	1 cut(s)	822
SmoI	CTYRAG	1 cut(s)	822
Sse9I	AATT	6 cut(s)	127, 389, 416, 465, 867, 1026
SsiI	CCGC	3 cut(s)	63, 102, 154
SspDI	GGCGCC	1 cut(s)	115
SspI	AATATT	1 cut(s)	598
SspMI	CTAG	2 cut(s)	68, 150
StyD4I	CCNGG	4 cut(s)	310, 353, 525, 856
TaaI	ACNGT	5 cut(s)	76, 262, 340, 731, 892
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	3 cut(s)	141, 162, 226
TasI	AATT	6 cut(s)	127, 389, 416, 465, 867, 1026
TauI	GCSGC	2 cut(s)	104, 156
TfiI	GAWTC	2 cut(s)	295, 333
Tru1I	TTAA	4 cut(s)	86, 327, 642, 933
Tru9I	TTAA	4 cut(s)	86, 327, 642, 933
TscAI	CASTG	2 cut(s)	343, 955
TseFI	GTSAC	2 cut(s)	579, 646
Tsp45I	GTSAC	2 cut(s)	579, 646
TspDTI	ATGAA	3 cut(s)	429, 651, 763
TspRI	CASTG	2 cut(s)	343, 955
Van91I	CCANNNNNTGG	1 cut(s)	521
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	1 cut(s)	416
XceI	RCATGY	1 cut(s)	446
XspI	CTAG	2 cut(s)	68, 150
ZraI	GACGTC	1 cut(s)	17
Zsp2I	ATGCAT	1 cut(s)	853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.