Rorug02G0087900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002579
Physical Location & Seq
Forward (+)
7020075 .. 7023111
3037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0087900.1

Sequence Viewer

Length: 699 bp
ATGGGCGATTCTTCATCAAAAGGACTAGCTCTGTTCTCTCCTTACAAGATGGGCAACTTCAATCTCTCTCACAGGGTCGTGCTTGCGCCAATGACAAGGTGTCGAGCTCCGAACGAAATTCCACAGCCAGCGATGATTGAGTATCCACGTGTTCCTGGGATTTATAGAGATGAACAGGTTGAGGAATGGAAGAAGGTGGTCGACGCCGTTCACGCCAAAGGTGCCATTATTTTCTGTCAACTTTGGCATGTAGGTCGTGCTTCTCATCAAGTTTACCAACCTGGCGGGGGCTCGCCTGTCTCTTCAACCAACAATCCCATTTCATATAGATGGAACGTTCCGTTGCCAGATGGTTCTGAGGACACTTACCCTCAGCCTCGACGCCTCGAAACCCACGAAATATCTCAGATTGTTGAGCAGTATTGCCGCGCTGCCTTAAATGCTATTCGAGCAGGTTTTGATGGAATTGAGATCCATGCGGCACACAGCTACCTCATTGATCAATTCTTGAAAGATGGAATCAACGATCGAACTGATGAGTATGGTGGGTCGCTTGCAAACCGTTGCAAATTCTTGATTCAAATTGTTCAAGCAGTAGTTGAAGCCATTGGTGCTGATAAAATTGCCGTTAGAATCTCACCAGCTATTGATTTTCATGATGCTACGTACGGACTCCAACCCATTTGGCCTAGGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

25.88

Weight (kDa)

6.44

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_FMN PF00724 48 - 219 6.4e-52 NADH:flavin oxidoreductase / NADH oxidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 443
AccB1I GGYRCC 1 cut(s) 221
AccI GTMKAC 1 cut(s) 201
AccII CGCG 1 cut(s) 429
AciI CCGC 3 cut(s) 285, 427, 479
AclI AACGTT 1 cut(s) 336
AclWI GGATC 1 cut(s) 466
AcsI RAATTY 2 cut(s) 117, 569
AcvI CACGTG 1 cut(s) 149
AcyI GRCGYC 2 cut(s) 204, 382
AfaI GTAC 1 cut(s) 668
AfiI CCNNNNNNNGG 1 cut(s) 287
AflIII ACRYGT 1 cut(s) 148
AgsI TTSAA 6 cut(s) 61, 306, 511, 581, 590, 602
AhdI GACNNNNNGTC 1 cut(s) 99
AjnI CCWGG 2 cut(s) 154, 280
AluBI AGCT 4 cut(s) 29, 107, 489, 644
AluI AGCT 4 cut(s) 29, 107, 489, 644
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 304
AlwI GGATC 1 cut(s) 466
AoxI GGCC 2 cut(s) 686, 692
ApeKI GCWGC 1 cut(s) 431
ApoI RAATTY 2 cut(s) 117, 569
AspA2I CCTAGG 1 cut(s) 689
AspLEI GCGC 2 cut(s) 88, 431
AsuHPI GGTGA 1 cut(s) 630
AvrII CCTAGG 1 cut(s) 689
BanI GGYRCC 1 cut(s) 221
BanII GRGCYC 2 cut(s) 109, 293
BbrPI CACGTG 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 109
BbvCI CCTCAGC 1 cut(s) 372
BbvI GCAGC 1 cut(s) 418
BccI CCATC 5 cut(s) 43, 324, 344, 455, 509
BceAI ACGGC 2 cut(s) 191, 611
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BciT130I CCWGG 2 cut(s) 156, 282
BciVI GTATCC 1 cut(s) 153
BclI TGATCA 1 cut(s) 499
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 2 cut(s) 26, 690
BfuAI ACCTGC 1 cut(s) 443
BfuI GTATCC 1 cut(s) 153
BisI GCNGC 3 cut(s) 427, 432, 480
BlnI CCTAGG 1 cut(s) 689
BlsI GCNGC 3 cut(s) 428, 433, 481
Bme1390I CCNGG 2 cut(s) 156, 282
BmeRI GACNNNNNGTC 1 cut(s) 99
BmiI GGNNCC 1 cut(s) 223
BmrFI CCNGG 2 cut(s) 156, 282
BmsI GCATC 1 cut(s) 649
Bpu10I CCTNAGC 1 cut(s) 372
BsaAI YACGTR 2 cut(s) 149, 666
BsaHI GRCGYC 2 cut(s) 204, 382
BsaJI CCNNGG 2 cut(s) 155, 689
Bsc4I CCNNNNNNNGG 1 cut(s) 287
BseBI CCWGG 2 cut(s) 156, 282
BseDI CCNNGG 2 cut(s) 155, 689
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMII CTCAG 3 cut(s) 348, 386, 419
BseXI GCAGC 1 cut(s) 418
Bsh1236I CGCG 1 cut(s) 429
Bsh1285I CGRYCG 1 cut(s) 529
BshFI GGCC 2 cut(s) 688, 694
BshNI GGYRCC 1 cut(s) 221
BsiEI CGRYCG 1 cut(s) 529
BsiHKAI GWGCWC 1 cut(s) 109
BsiWI CGTACG 1 cut(s) 666
BslI CCNNNNNNNGG 1 cut(s) 287
BsmAI GTCTC 1 cut(s) 304
BsnI GGCC 2 cut(s) 688, 694
Bsp1286I GDGCHC 2 cut(s) 109, 293
Bsp143I GATC 3 cut(s) 471, 499, 526
BspACI CCGC 3 cut(s) 285, 427, 479
BspANI GGCC 2 cut(s) 688, 694
BspCNI CTCAG 3 cut(s) 349, 385, 418
BspFNI CGCG 1 cut(s) 429
BspHI TCATGA 1 cut(s) 655
BspLI GGNNCC 1 cut(s) 223
BspMI ACCTGC 1 cut(s) 443
BspPI GGATC 1 cut(s) 466
BspT107I GGYRCC 1 cut(s) 221
BssECI CCNNGG 2 cut(s) 155, 689
BssMI GATC 3 cut(s) 471, 499, 526
BssNI GRCGYC 2 cut(s) 204, 382
BssT1I CCWWGG 1 cut(s) 689
Bst2UI CCWGG 2 cut(s) 156, 282
Bst4CI ACNGT 1 cut(s) 563
Bst6I CTCTTC 1 cut(s) 307
BstACI GRCGYC 2 cut(s) 204, 382
BstBAI YACGTR 2 cut(s) 149, 666
BstC8I GCNNGC 4 cut(s) 84, 129, 293, 555
BstDEI CTNAG 3 cut(s) 357, 372, 405
BstFNI CGCG 1 cut(s) 429
BstHHI GCGC 2 cut(s) 88, 431
BstKTI GATC 3 cut(s) 474, 502, 529
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 3 cut(s) 471, 499, 526
BstMCI CGRYCG 1 cut(s) 529
BstMWI GCNNNNNNNGC 5 cut(s) 212, 221, 440, 449, 611
BstNI CCWGG 2 cut(s) 156, 282
BstNSI RCATGY 1 cut(s) 251
BstSCI CCNGG 2 cut(s) 154, 280
BstSNI TACGTA 1 cut(s) 666
BstUI CGCG 1 cut(s) 429
BstV1I GCAGC 1 cut(s) 418
BstX2I RGATCY 1 cut(s) 471
BstYI RGATCY 1 cut(s) 471
BsuI GTATCC 1 cut(s) 153
BsuRI GGCC 2 cut(s) 688, 694
BtgZI GCGATG 1 cut(s) 146
BveI ACCTGC 1 cut(s) 443
Cac8I GCNNGC 4 cut(s) 84, 129, 293, 555
CciI TCATGA 1 cut(s) 655
CfoI GCGC 2 cut(s) 88, 431
CseI GACGC 2 cut(s) 212, 390
Csp6I GTAC 1 cut(s) 667
CviAII CATG 3 cut(s) 248, 476, 656
CviQI GTAC 1 cut(s) 667
DdeI CTNAG 3 cut(s) 357, 372, 405
DpnI GATC 3 cut(s) 473, 501, 528
DpnII GATC 3 cut(s) 471, 499, 526
DriI GACNNNNNGTC 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 307
Eam1105I GACNNNNNGTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 307
Ecl136II GAGCTC 1 cut(s) 107
Eco105I TACGTA 1 cut(s) 666
Eco130I CCWWGG 1 cut(s) 689
Eco147I AGGCCT 1 cut(s) 694
Eco24I GRGCYC 2 cut(s) 109, 293
Eco53kI GAGCTC 1 cut(s) 107
Eco72I CACGTG 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 107
EcoRII CCWGG 2 cut(s) 154, 280
EcoT14I CCWWGG 1 cut(s) 689
EcoT38I GRGCYC 2 cut(s) 109, 293
ErhI CCWWGG 1 cut(s) 689
FaeI CATG 3 cut(s) 251, 479, 659
FaiI YATR 7 cut(s) 165, 249, 325, 327, 477, 543, 657
FatI CATG 3 cut(s) 247, 475, 655
FauI CCCGC 1 cut(s) 278
FbaI TGATCA 1 cut(s) 499
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 3 cut(s) 427, 432, 480
FriOI GRGCYC 2 cut(s) 109, 293
Fsp4HI GCNGC 3 cut(s) 427, 432, 480
FspBI CTAG 2 cut(s) 26, 690
GlaI GCGC 2 cut(s) 87, 430
GluI GCNGC 3 cut(s) 427, 432, 480
HaeIII GGCC 2 cut(s) 688, 694
HgaI GACGC 2 cut(s) 212, 390
HhaI GCGC 2 cut(s) 88, 431
Hin1I GRCGYC 2 cut(s) 204, 382
Hin1II CATG 3 cut(s) 251, 479, 659
Hin6I GCGC 2 cut(s) 86, 429
HinP1I GCGC 2 cut(s) 86, 429
HincII GTYRAC 2 cut(s) 202, 239
HindII GTYRAC 2 cut(s) 202, 239
HinfI GANTC 5 cut(s) 8, 519, 577, 633, 672
HphI GGTGA 1 cut(s) 630
Hpy166II GTNNAC 4 cut(s) 202, 211, 239, 274
Hpy188I TCNGA 3 cut(s) 111, 358, 408
Hpy188III TCNNGA 3 cut(s) 508, 574, 656
Hpy8I GTNNAC 4 cut(s) 202, 211, 239, 274
Hpy99I CGWCG 2 cut(s) 206, 384
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 563
HpyCH4IV ACGT 3 cut(s) 148, 336, 665
HpyCH4V TGCA 2 cut(s) 557, 567
HpyF10VI GCNNNNNNNGC 5 cut(s) 212, 221, 440, 449, 611
HpyF3I CTNAG 3 cut(s) 357, 372, 405
HpySE526I ACGT 3 cut(s) 148, 336, 665
Hsp92I GRCGYC 2 cut(s) 204, 382
Hsp92II CATG 3 cut(s) 251, 479, 659
HspAI GCGC 2 cut(s) 86, 429
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 3 cut(s) 471, 499, 526
LmnI GCTCC 1 cut(s) 112
Lsp1109I GCAGC 1 cut(s) 418
LweI GCATC 1 cut(s) 649
MaeI CTAG 2 cut(s) 26, 690
MaeII ACGT 3 cut(s) 148, 336, 665
MalI GATC 3 cut(s) 473, 501, 528
MboI GATC 3 cut(s) 471, 499, 526
MboII GAAGA 3 cut(s) 3, 202, 294
MflI RGATCY 1 cut(s) 471
MhlI GDGCHC 2 cut(s) 109, 293
MluCI AATT 6 cut(s) 117, 465, 503, 569, 582, 621
MlyI GAGTC 1 cut(s) 666
MnlI CCTC 6 cut(s) 175, 352, 381, 387, 395, 503
MseI TTAA 1 cut(s) 437
MslI CAYNNNNRTG 1 cut(s) 328
MspR9I CCNGG 2 cut(s) 156, 282
MvaI CCWGG 2 cut(s) 156, 282
MvnI CGCG 1 cut(s) 429
MwoI GCNNNNNNNGC 5 cut(s) 212, 221, 440, 449, 611
NdeII GATC 3 cut(s) 471, 499, 526
NlaIII CATG 3 cut(s) 251, 479, 659
NlaIV GGNNCC 1 cut(s) 223
NspI RCATGY 1 cut(s) 251
PagI TCATGA 1 cut(s) 655
PceI AGGCCT 1 cut(s) 694
PcsI WCGNNNNNNNCGW 1 cut(s) 393
PfeI GAWTC 4 cut(s) 8, 519, 577, 633
Pfl23II CGTACG 1 cut(s) 666
PkrI GCNGC 3 cut(s) 428, 433, 481
Ple19I CGATCG 1 cut(s) 529
PleI GAGTC 1 cut(s) 666
PmaCI CACGTG 1 cut(s) 149
PmlI CACGTG 1 cut(s) 149
PpsI GAGTC 1 cut(s) 666
Ppu21I YACGTR 2 cut(s) 149, 666
Psp124BI GAGCTC 1 cut(s) 109
Psp1406I AACGTT 1 cut(s) 336
Psp6I CCWGG 2 cut(s) 154, 280
PspCI CACGTG 1 cut(s) 149
PspGI CCWGG 2 cut(s) 154, 280
PspLI CGTACG 1 cut(s) 666
PspN4I GGNNCC 1 cut(s) 223
PsuI RGATCY 1 cut(s) 471
PvuI CGATCG 1 cut(s) 529
RsaI GTAC 1 cut(s) 668
RsaNI GTAC 1 cut(s) 667
RseI CAYNNNNRTG 1 cut(s) 328
SacI GAGCTC 1 cut(s) 109
SalI GTCGAC 1 cut(s) 200
SaqAI TTAA 1 cut(s) 437
SatI GCNGC 3 cut(s) 427, 432, 480
Sau3AI GATC 3 cut(s) 471, 499, 526
SchI GAGTC 1 cut(s) 666
ScrFI CCNGG 2 cut(s) 156, 282
SduI GDGCHC 2 cut(s) 109, 293
SfaNI GCATC 1 cut(s) 649
SmiMI CAYNNNNRTG 1 cut(s) 328
SnaBI TACGTA 1 cut(s) 666
Sse9I AATT 6 cut(s) 117, 465, 503, 569, 582, 621
SseBI AGGCCT 1 cut(s) 694
SsiI CCGC 3 cut(s) 285, 427, 479
SspMI CTAG 2 cut(s) 26, 690
SstI GAGCTC 1 cut(s) 109
StuI AGGCCT 1 cut(s) 694
StyD4I CCNGG 2 cut(s) 154, 280
StyI CCWWGG 1 cut(s) 689
TaaI ACNGT 1 cut(s) 563
TaiI ACGT 3 cut(s) 151, 339, 668
TaqI TCGA 6 cut(s) 103, 201, 379, 387, 448, 529
TasI AATT 6 cut(s) 117, 465, 503, 569, 582, 621
TauI GCSGC 2 cut(s) 429, 482
TfiI GAWTC 4 cut(s) 8, 519, 577, 633
Tru1I TTAA 1 cut(s) 437
Tru9I TTAA 1 cut(s) 437
TseI GCWGC 1 cut(s) 431
TspDTI ATGAA 3 cut(s) 186, 312, 644
TspGWI ACGGA 2 cut(s) 330, 684
XapI RAATTY 2 cut(s) 117, 569
XceI RCATGY 1 cut(s) 251
XmaJI CCTAGG 1 cut(s) 689
XmiI GTMKAC 1 cut(s) 201
XspI CTAG 2 cut(s) 26, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.