Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006004

Physical Location & Seq

Genomic Coordinates Forward (+)

17504428 .. 17506504

Gene Structure 2077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G37180.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGTTCAAACAGAAACCGATCAAAGGATGGGTCTTAATCTGAATTTGTCTATCTACTCTTTACCAAAACCCTTATCTCAATTTCTCGATGAAGTGTCGAGGATCAAAGACAATCATTCCAAACTGTCTGAAATCGATGGTTATGTCGGAAAATTAGAGGAAGAAAGGAACAAAATCGATGTTTTTAAACGAGAACTCCCTTTATGCATGCTCTTATTGAACGAAGCGATTGGGGCGTTGAAGGATGAGGCTAGAAAAGGGTTATCACTGATGGCATCTAATGGGAAATTCGATGATGTTGAAAGGGCAAAACCGGAAACTGATAAGAAGAGCTGGATGAGCTCTGCCCAGTTATGGATCTCGAACCCTAATTCCCAATTCCGATCGACAAATGAAGAAGAAGAAGATCGGTGTGTGAGTCAGAACCCATTTCAGACATGTAATTACCCTAATCAAGGAGGGGTATTTATGCCATTTAACCGTCCCCCACCTCCTCCACCACCAGCTCCTCTGTCTCTCATGACTCCAACATCAGAGATGATGATGGATTATAGCAGAATTGAGCAGAGTCATCATCATCATCAATTCAATAAACCTTCTTCACAGAGTCATCACATTCAGAAGAAAGAGCAGAGAAGGAGATGGTCACAGGAACTTCACCGTAAATTTGTTGATGCTCTTCATAGGCTTGGAGGGCCACAAGTTGCTACACCAAAGCAGATTAGAGATTTGATGAAAGTTGATGGTTTAACCAATGATGAAGTCAAGAGCCATTTACAAAAATATAGAATGCATATCCGTAAGCATCCGCTGCATCCGACAAAGACTTTGTCATCGTCGGATCAGCCAGGTGTGTTAGAGAGAGAATCGCAGAGCTTAATAAGTTTGTCGAGGTCGGATTCGCCACAAAGCCCACTTGTTGCAAGAGGGTTGTTCAGTAGTAATGTTGGTCATAGCTCAGAGGAAGATGAGGAGGAGGAGGATGAAGAGGAGGAGAAGTCTGATGGACGTAGTAGCTGTAGAAATGATGAAACAAAGAAGAAGAGACAAGTGTTGGATCTTGAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009892 GO:0009908 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048519 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

356

Amino Acids

40.87

Weight (kDa)

6.19

Isoelectric Point (pI)

71.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HHO5_N	PF26575	15 - 84	1e-26	HHO5-like, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37180 AT4G37180 AT4G37180
fragaria_vesca	FvH4_1g15450 FvH4_1g15470 FvH4_1g15470 FvH4_1g15470 FvH4_1g15470
malus_domestica	MD02G1166700.v1.1 MD15G1279200.v1.1
prunus_persica	Prupe.7G138100_v2.0.a1 Prupe.7G138100_v2.0.a1
pyrus_communis	pycom02g13400 pycom15g24200
rosa_chinensis	RchiOBHm_Chr2g0104701
rosa_laevigata	RLG00000017352
rosa_multiflora	Rmu_ssc0000441.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138820
rosa_rugosa	Rorug02G0121700 Rorug02G0121800
rosa_samantha	Rh2AG172100 Rh2BG179700 Rh2CG177200 Rh2DG178400
rosa_wichuraiana	Rw0G008620 Rw2G013470 Rw2G013530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	809
AclWI	GGATC	4 cut(s)	110, 365, 849, 1065
AcsI	RAATTY	3 cut(s)	43, 287, 665
AfiI	CCNNNNNNNGG	3 cut(s)	24, 354, 455
AflIII	ACRYGT	1 cut(s)	437
AgsI	TTSAA	5 cut(s)	8, 220, 241, 302, 589
AjnI	CCWGG	1 cut(s)	847
AloI	GAACNNNNNNTCC	2 cut(s)	356, 388
AluBI	AGCT	7 cut(s)	333, 342, 506, 876, 957, 1017, 1066
AluI	AGCT	7 cut(s)	333, 342, 506, 876, 957, 1017, 1066
Alw21I	GWGCWC	1 cut(s)	344
Alw26I	GTCTC	2 cut(s)	519, 1039
AlwI	GGATC	4 cut(s)	110, 365, 849, 1065
AoxI	GGCC	1 cut(s)	695
ApeKI	GCWGC	1 cut(s)	811
ApoI	RAATTY	3 cut(s)	43, 287, 665
ArsI	GACNNNNNNTTYG	6 cut(s)	16, 48, 811, 815, 843, 847
AspS9I	GGNCC	1 cut(s)	695
AsuHPI	GGTGA	1 cut(s)	650
BanII	GRGCYC	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	344
BbvI	GCAGC	1 cut(s)	798
BccI	CCATC	7 cut(s)	22, 131, 265, 538, 636, 737, 998
BciT130I	CCWGG	1 cut(s)	849
BcoDI	GTCTC	2 cut(s)	519, 1039
BfaI	CTAG	1 cut(s)	252
BfmI	CTRYAG	1 cut(s)	1018
BisI	GCNGC	1 cut(s)	812
BlsI	GCNGC	1 cut(s)	813
Bme1390I	CCNGG	1 cut(s)	849
BmgT120I	GGNCC	1 cut(s)	695
BmrFI	CCNGG	1 cut(s)	849
BmrI	ACTGGG	1 cut(s)	343
BmsI	GCATC	4 cut(s)	284, 664, 814, 823
BmuI	ACTGGG	1 cut(s)	343
Bsa29I	ATCGAT	2 cut(s)	135, 177
BsaWI	WCCGGW	1 cut(s)	313
BsaXI	ACNNNNNCTCC	4 cut(s)	180, 210, 983, 1013
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 354, 455
Bse1I	ACTGG	1 cut(s)	349
BseBI	CCWGG	1 cut(s)	849
BseCI	ATCGAT	2 cut(s)	135, 177
BseGI	GGATG	6 cut(s)	33, 250, 342, 805, 814, 988
BseLI	CCNNNNNNNGG	3 cut(s)	24, 354, 455
BseMII	CTCAG	1 cut(s)	972
BseNI	ACTGG	1 cut(s)	349
BseRI	GAGGAG	7 cut(s)	483, 498, 986, 989, 992, 1004, 1007
BseXI	GCAGC	1 cut(s)	798
Bsh1285I	CGRYCG	1 cut(s)	386
BshFI	GGCC	1 cut(s)	697
BshVI	ATCGAT	2 cut(s)	135, 177
BsiEI	CGRYCG	1 cut(s)	386
BsiHKAI	GWGCWC	1 cut(s)	344
BsiSI	CCGG	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	3 cut(s)	24, 354, 455
BsmAI	GTCTC	2 cut(s)	519, 1039
BsmFI	GGGAC	1 cut(s)	468
BsmI	GAATGC	1 cut(s)	795
BsnI	GGCC	1 cut(s)	697
Bsp1286I	GDGCHC	1 cut(s)	344
Bsp143I	GATC	7 cut(s)	19, 102, 357, 383, 406, 841, 1057
BspACI	CCGC	1 cut(s)	809
BspANI	GGCC	1 cut(s)	697
BspCNI	CTCAG	1 cut(s)	971
BspDI	ATCGAT	2 cut(s)	135, 177
BspHI	TCATGA	1 cut(s)	519
BspPI	GGATC	4 cut(s)	110, 365, 849, 1065
BspQI	GCTCTTC	2 cut(s)	323, 684
BsrI	ACTGG	1 cut(s)	349
BssMI	GATC	7 cut(s)	19, 102, 357, 383, 406, 841, 1057
Bst2UI	CCWGG	1 cut(s)	849
Bst4CI	ACNGT	3 cut(s)	126, 482, 662
Bst6I	CTCTTC	4 cut(s)	323, 684, 981, 1037
BstAPI	GCANNNNNTGC	1 cut(s)	811
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	1 cut(s)	958
BstENI	CCTNNNNNAGG	1 cut(s)	453
BstF5I	GGATG	6 cut(s)	33, 250, 342, 805, 814, 988
BstKTI	GATC	7 cut(s)	22, 105, 360, 386, 409, 844, 1060
BstMAI	GTCTC	2 cut(s)	519, 1039
BstMBI	GATC	7 cut(s)	19, 102, 357, 383, 406, 841, 1057
BstMCI	CGRYCG	1 cut(s)	386
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 339, 694, 811
BstNI	CCWGG	1 cut(s)	849
BstNSI	RCATGY	2 cut(s)	211, 441
BstSCI	CCNGG	1 cut(s)	847
BstSFI	CTRYAG	1 cut(s)	1018
BstV1I	GCAGC	1 cut(s)	798
BstX2I	RGATCY	2 cut(s)	357, 1057
BstYI	RGATCY	2 cut(s)	357, 1057
Bsu15I	ATCGAT	2 cut(s)	135, 177
BsuRI	GGCC	1 cut(s)	697
BsuTUI	ATCGAT	2 cut(s)	135, 177
BtsCI	GGATG	6 cut(s)	33, 250, 342, 805, 814, 988
BtsIMutI	CAGTG	1 cut(s)	266
Cac8I	GCNNGC	1 cut(s)	209
CciI	TCATGA	1 cut(s)	519
Cfr13I	GGNCC	1 cut(s)	695
ClaI	ATCGAT	2 cut(s)	135, 177
CviAII	CATG	3 cut(s)	208, 438, 520
DdeI	CTNAG	1 cut(s)	958
DpnI	GATC	7 cut(s)	21, 104, 359, 385, 408, 843, 1059
DpnII	GATC	7 cut(s)	19, 102, 357, 383, 406, 841, 1057
DraI	TTTAAA	1 cut(s)	187
Eam1104I	CTCTTC	4 cut(s)	323, 684, 981, 1037
EarI	CTCTTC	4 cut(s)	323, 684, 981, 1037
Ecl136II	GAGCTC	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	344
Eco53kI	GAGCTC	1 cut(s)	342
EcoICRI	GAGCTC	1 cut(s)	342
EcoNI	CCTNNNNNAGG	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	847
EcoT22I	ATGCAT	2 cut(s)	209, 795
EcoT38I	GRGCYC	1 cut(s)	344
FaeI	CATG	3 cut(s)	211, 441, 523
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	3 cut(s)	207, 437, 519
Fnu4HI	GCNGC	1 cut(s)	812
FokI	GGATG	6 cut(s)	40, 257, 349, 792, 801, 995
FriOI	GRGCYC	1 cut(s)	344
Fsp4HI	GCNGC	1 cut(s)	812
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	1 cut(s)	812
HaeIII	GGCC	1 cut(s)	697
HapII	CCGG	1 cut(s)	314
Hin1II	CATG	3 cut(s)	211, 441, 523
HinfI	GANTC	6 cut(s)	418, 523, 568, 607, 866, 899
HpaII	CCGG	1 cut(s)	314
HphI	GGTGA	1 cut(s)	650
Hpy188III	TCNNGA	5 cut(s)	86, 361, 520, 766, 1061
Hpy99I	CGWCG	1 cut(s)	841
HpyAV	CCTTC	3 cut(s)	235, 606, 630
HpyCH4III	ACNGT	3 cut(s)	126, 482, 662
HpyCH4IV	ACGT	1 cut(s)	1009
HpyCH4V	TGCA	4 cut(s)	207, 793, 814, 923
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 339, 694, 811
HpyF3I	CTNAG	1 cut(s)	958
HpySE526I	ACGT	1 cut(s)	1009
Hsp92II	CATG	3 cut(s)	211, 441, 523
Kzo9I	GATC	7 cut(s)	19, 102, 357, 383, 406, 841, 1057
LguI	GCTCTTC	2 cut(s)	323, 684
LmnI	GCTCC	1 cut(s)	511
LpnPI	CCDG	7 cut(s)	319, 327, 362, 516, 635, 834, 861
Lsp1109I	GCAGC	1 cut(s)	798
LweI	GCATC	4 cut(s)	284, 664, 814, 823
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	1 cut(s)	1009
MaeIII	GTNAC	1 cut(s)	645
MalI	GATC	7 cut(s)	21, 104, 359, 385, 408, 843, 1059
MboI	GATC	7 cut(s)	19, 102, 357, 383, 406, 841, 1057
MflI	RGATCY	2 cut(s)	357, 1057
MhlI	GDGCHC	1 cut(s)	344
MlyI	GAGTC	4 cut(s)	427, 517, 577, 616
MmeI	TCCRAC	6 cut(s)	127, 551, 819, 842, 876, 1035
Mph1103I	ATGCAT	2 cut(s)	209, 795
MseI	TTAA	5 cut(s)	36, 186, 477, 749, 878
MspA1I	CMGCKG	1 cut(s)	811
MspI	CCGG	1 cut(s)	314
MspR9I	CCNGG	1 cut(s)	849
Mva1269I	GAATGC	1 cut(s)	795
MvaI	CCWGG	1 cut(s)	849
MwoI	GCNNNNNNNGC	4 cut(s)	233, 339, 694, 811
NdeII	GATC	7 cut(s)	19, 102, 357, 383, 406, 841, 1057
NlaIII	CATG	3 cut(s)	211, 441, 523
NmuCI	GTSAC	1 cut(s)	645
NsiI	ATGCAT	2 cut(s)	209, 795
NspI	RCATGY	2 cut(s)	211, 441
PaeI	GCATGC	1 cut(s)	211
PagI	TCATGA	1 cut(s)	519
PciI	ACATGT	1 cut(s)	437
PciSI	GCTCTTC	2 cut(s)	323, 684
PctI	GAATGC	1 cut(s)	795
PfeI	GAWTC	2 cut(s)	866, 899
PflFI	GACNNNGTC	1 cut(s)	829
PkrI	GCNGC	1 cut(s)	813
Ple19I	CGATCG	1 cut(s)	386
PleI	GAGTC	4 cut(s)	426, 517, 576, 615
PpsI	GAGTC	4 cut(s)	426, 517, 576, 615
PscI	ACATGT	1 cut(s)	437
Psp124BI	GAGCTC	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	847
PspGI	CCWGG	1 cut(s)	847
PspPI	GGNCC	1 cut(s)	695
PsuI	RGATCY	2 cut(s)	357, 1057
PsyI	GACNNNGTC	1 cut(s)	829
PvuI	CGATCG	1 cut(s)	386
SacI	GAGCTC	1 cut(s)	344
SapI	GCTCTTC	2 cut(s)	323, 684
SaqAI	TTAA	5 cut(s)	36, 186, 477, 749, 878
SatI	GCNGC	1 cut(s)	812
Sau3AI	GATC	7 cut(s)	19, 102, 357, 383, 406, 841, 1057
Sau96I	GGNCC	1 cut(s)	695
SchI	GAGTC	4 cut(s)	427, 517, 577, 616
ScrFI	CCNGG	1 cut(s)	849
SduI	GDGCHC	1 cut(s)	344
SfaNI	GCATC	4 cut(s)	284, 664, 814, 823
SfcI	CTRYAG	1 cut(s)	1018
SmlI	CTYRAG	1 cut(s)	1061
SmoI	CTYRAG	1 cut(s)	1061
SphI	GCATGC	1 cut(s)	211
SsiI	CCGC	1 cut(s)	809
SspMI	CTAG	1 cut(s)	252
SstI	GAGCTC	1 cut(s)	344
StyD4I	CCNGG	1 cut(s)	847
TaaI	ACNGT	3 cut(s)	126, 482, 662
TaiI	ACGT	1 cut(s)	1012
TaqI	TCGA	8 cut(s)	87, 98, 135, 177, 291, 362, 386, 890
TfiI	GAWTC	2 cut(s)	866, 899
Tru1I	TTAA	5 cut(s)	36, 186, 477, 749, 878
Tru9I	TTAA	5 cut(s)	36, 186, 477, 749, 878
TscAI	CASTG	1 cut(s)	273
TseFI	GTSAC	1 cut(s)	645
TseI	GCWGC	1 cut(s)	811
Tsp45I	GTSAC	1 cut(s)	645
TspDTI	ATGAA	7 cut(s)	105, 408, 671, 749, 774, 999, 1044
TspGWI	ACGGA	1 cut(s)	788
TspRI	CASTG	1 cut(s)	273
Tth111I	GACNNNGTC	1 cut(s)	829
XagI	CCTNNNNNAGG	1 cut(s)	453
XapI	RAATTY	3 cut(s)	43, 287, 665
XceI	RCATGY	2 cut(s)	211, 441
XspI	CTAG	1 cut(s)	252
Zsp2I	ATGCAT	2 cut(s)	209, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.