Rw0G008620
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00331
OG0006004
Physical Location & Seq
Forward (+)
8164 .. 9420
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G008620.1

Sequence Viewer

Length: 783 bp
ATGAGGATGATGATCGGTCTGTGCCTGAGAACCCAATTGAGAAAAGTAATAAGAAAGAGAAGCAGGGGAGGGGCGTTTGTGCCATTCAAGGGAAATTATGAGTCTGGTTTTGCGAGGACTTGTGTGAAGGAAGACAAGGAGGTTTCACAGGTGCCAAGCCTTTCTCTGATGACTCCAACGTCTGAACTTGGTGGCTTTAATAATGCAAACTCTAAGAGCAGCACTAGAGGAGGTTCTGGTCCATCTTTGGCGAAGTTACAGATTGAGCATCAGCAGCAGCAACAATGTTTTAGGAAACAAAGGCGATGCTGGTCACCGGAGCTTCATCGCCGATTTGTTGATGCACTTCAACAGCTTGGGGGATCACAAGTAGCTACTCCTAAACAGATTAGAGAGCTTATGCAGGTAGATGGTCTCACCAATGATGAAGTGAAAAGCCATTTGCAGAAATACAGACTTCACGTCCGAAAGGTACCAGCCTCTTCTGCTGGTGAAGCCAGTGGTTTATGGATGAACCAAGATCACTGTGGAGACAATTCAAAGGCAAATACTTCACAGTCGGGTTCTCCACAGGGTCCCCTCCTTGGTATGGAGTTTGCCAAAGGTGGTCAATCTACAACCGGAGGCAACAGCACAGAAACAGAAGAAGATGATCAGAATTCAGACGGCCACAGTTGGAAAGGGGCACGCCACAACTCTGGTGGAGATGTAGAGTCTTGTACTAATCCCCTGAATTTTGCAAATACCAATATACGTGGGGATATAGCATATTCTCTGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

260

Amino Acids

28.48

Weight (kDa)

9.3

Isoelectric Point (pI)

53.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 101 - 152 5.7e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 178
Acc36I ACCTGC 1 cut(s) 394
Acc65I GGTACC 1 cut(s) 472
AccB1I GGYRCC 2 cut(s) 151, 472
AclWI GGATC 1 cut(s) 370
AcoI YGGCCR 1 cut(s) 667
AcsI RAATTY 2 cut(s) 658, 733
AfaI GTAC 2 cut(s) 474, 721
AfiI CCNNNNNNNGG 3 cut(s) 89, 584, 589
AgsI TTSAA 3 cut(s) 88, 350, 540
AhdI GACNNNNNGTC 1 cut(s) 461
AjiI CACGTC 1 cut(s) 463
AluBI AGCT 4 cut(s) 322, 355, 374, 397
AluI AGCT 4 cut(s) 322, 355, 374, 397
Alw26I GTCTC 2 cut(s) 419, 525
AlwI GGATC 1 cut(s) 370
AoxI GGCC 1 cut(s) 667
ApeKI GCWGC 3 cut(s) 219, 274, 277
ApoI RAATTY 2 cut(s) 658, 733
Asp718I GGTACC 1 cut(s) 472
AspS9I GGNCC 2 cut(s) 239, 575
AsuHPI GGTGA 3 cut(s) 306, 409, 503
AvaII GGWCC 2 cut(s) 239, 575
BaeGI GKGCMC 1 cut(s) 688
BanI GGYRCC 2 cut(s) 151, 472
BbsI GAAGAC 1 cut(s) 138
BbvI GCAGC 3 cut(s) 231, 286, 289
BccI CCATC 2 cut(s) 250, 404
BceAI ACGGC 1 cut(s) 682
BclI TGATCA 1 cut(s) 652
BcoDI GTCTC 2 cut(s) 419, 525
BfaI CTAG 1 cut(s) 225
BfuAI ACCTGC 1 cut(s) 394
BisI GCNGC 3 cut(s) 220, 275, 278
BlsI GCNGC 3 cut(s) 221, 276, 279
Bme18I GGWCC 2 cut(s) 239, 575
BmeRI GACNNNNNGTC 1 cut(s) 461
BmgBI CACGTC 1 cut(s) 463
BmgT120I GGNCC 2 cut(s) 239, 575
BmiI GGNNCC 4 cut(s) 153, 474, 576, 577
BmsI GCATC 3 cut(s) 277, 296, 331
BpiI GAAGAC 1 cut(s) 138
BsaAI YACGTR 1 cut(s) 755
BsaBI GATNNNNATC 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 583
BsaWI WCCGGW 2 cut(s) 316, 620
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 584, 589
Bse1I ACTGG 1 cut(s) 498
Bse8I GATNNNNATC 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 583
BseGI GGATG 2 cut(s) 12, 516
BseJI GATNNNNATC 1 cut(s) 11
BseLI CCNNNNNNNGG 3 cut(s) 89, 584, 589
BseMII CTCAG 1 cut(s) 17
BseNI ACTGG 1 cut(s) 498
BseRI GAGGAG 1 cut(s) 243
BseSI GKGCMC 1 cut(s) 688
BseXI GCAGC 3 cut(s) 231, 286, 289
BshFI GGCC 1 cut(s) 669
BshNI GGYRCC 2 cut(s) 151, 472
BsiSI CCGG 2 cut(s) 317, 621
BslFI GGGAC 1 cut(s) 561
BslI CCNNNNNNNGG 3 cut(s) 89, 584, 589
BsmAI GTCTC 2 cut(s) 419, 525
BsmFI GGGAC 1 cut(s) 561
BsnI GGCC 1 cut(s) 669
Bso31I GGTCTC 1 cut(s) 419
Bsp1286I GDGCHC 1 cut(s) 688
Bsp143I GATC 5 cut(s) 12, 362, 520, 652, 777
BspANI GGCC 1 cut(s) 669
BspCNI CTCAG 1 cut(s) 18
BspLI GGNNCC 4 cut(s) 153, 474, 576, 577
BspMI ACCTGC 1 cut(s) 394
BspPI GGATC 1 cut(s) 370
BspT107I GGYRCC 2 cut(s) 151, 472
BspTNI GGTCTC 1 cut(s) 419
BsrI ACTGG 1 cut(s) 498
BssECI CCNNGG 1 cut(s) 583
BssMI GATC 5 cut(s) 12, 362, 520, 652, 777
BssT1I CCWWGG 1 cut(s) 583
Bst4CI ACNGT 3 cut(s) 527, 558, 674
Bst6I CTCTTC 1 cut(s) 487
BstBAI YACGTR 1 cut(s) 755
BstC8I GCNNGC 1 cut(s) 688
BstDEI CTNAG 2 cut(s) 26, 213
BstEII GGTNACC 1 cut(s) 312
BstF5I GGATG 2 cut(s) 12, 516
BstKTI GATC 5 cut(s) 15, 365, 523, 655, 780
BstMAI GTCTC 2 cut(s) 419, 525
BstMBI GATC 5 cut(s) 12, 362, 520, 652, 777
BstMWI GCNNNNNNNGC 3 cut(s) 274, 485, 494
BstPI GGTNACC 1 cut(s) 312
BstSLI GKGCMC 1 cut(s) 688
BstV1I GCAGC 3 cut(s) 231, 286, 289
BstV2I GAAGAC 1 cut(s) 138
BstXI CCANNNNNNTGG 1 cut(s) 698
BsuRI GGCC 1 cut(s) 669
BtgZI GCGATG 2 cut(s) 311, 319
BtrI CACGTC 1 cut(s) 463
BtsCI GGATG 2 cut(s) 12, 516
BtsIMutI CAGTG 2 cut(s) 505, 523
BveI ACCTGC 1 cut(s) 394
Cac8I GCNNGC 1 cut(s) 688
Cfr13I GGNCC 2 cut(s) 239, 575
Csp6I GTAC 2 cut(s) 473, 720
CspCI CAANNNNNGTGG 4 cut(s) 682, 717, 736, 771
CviQI GTAC 2 cut(s) 473, 720
DdeI CTNAG 2 cut(s) 26, 213
DpnI GATC 5 cut(s) 14, 364, 522, 654, 779
DpnII GATC 5 cut(s) 12, 362, 520, 652, 777
DrdI GACNNNNNNGTC 1 cut(s) 178
DriI GACNNNNNGTC 1 cut(s) 461
DseDI GACNNNNNNGTC 1 cut(s) 178
EaeI YGGCCR 1 cut(s) 667
Eam1104I CTCTTC 1 cut(s) 487
Eam1105I GACNNNNNGTC 1 cut(s) 461
EarI CTCTTC 1 cut(s) 487
Eco130I CCWWGG 1 cut(s) 583
Eco31I GGTCTC 1 cut(s) 419
Eco47I GGWCC 2 cut(s) 239, 575
Eco91I GGTNACC 1 cut(s) 312
EcoO109I RGGNCCY 1 cut(s) 575
EcoO65I GGTNACC 1 cut(s) 312
EcoRI GAATTC 1 cut(s) 658
EcoT14I CCWWGG 1 cut(s) 583
ErhI CCWWGG 1 cut(s) 583
FaiI YATR 7 cut(s) 99, 401, 508, 590, 752, 764, 769
FaqI GGGAC 1 cut(s) 561
FbaI TGATCA 1 cut(s) 652
Fnu4HI GCNGC 3 cut(s) 220, 275, 278
FokI GGATG 2 cut(s) 19, 523
Fsp4HI GCNGC 3 cut(s) 220, 275, 278
FspBI CTAG 1 cut(s) 225
GluI GCNGC 3 cut(s) 220, 275, 278
HaeIII GGCC 1 cut(s) 669
HapII CCGG 2 cut(s) 317, 621
HinfI GANTC 3 cut(s) 101, 172, 713
HpaII CCGG 2 cut(s) 317, 621
HphI GGTGA 3 cut(s) 306, 409, 503
Hpy188I TCNGA 7 cut(s) 168, 184, 467, 657, 664, 777, 782
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 3 cut(s) 527, 558, 674
HpyCH4IV ACGT 3 cut(s) 179, 462, 754
HpyCH4V TGCA 5 cut(s) 206, 344, 403, 445, 740
HpyF10VI GCNNNNNNNGC 3 cut(s) 274, 485, 494
HpyF3I CTNAG 2 cut(s) 26, 213
HpySE526I ACGT 3 cut(s) 179, 462, 754
KflI GGGWCCC 1 cut(s) 575
KpnI GGTACC 1 cut(s) 476
Ksp22I TGATCA 1 cut(s) 652
Kzo9I GATC 5 cut(s) 12, 362, 520, 652, 777
LmnI GCTCC 1 cut(s) 319
Lsp1109I GCAGC 3 cut(s) 231, 286, 289
LweI GCATC 3 cut(s) 277, 296, 331
MaeI CTAG 1 cut(s) 225
MaeII ACGT 3 cut(s) 179, 462, 754
MaeIII GTNAC 2 cut(s) 255, 312
MalI GATC 5 cut(s) 14, 364, 522, 654, 779
MboI GATC 5 cut(s) 12, 362, 520, 652, 777
MboII GAAGA 4 cut(s) 143, 474, 656, 659
MfeI CAATTG 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 688
MluCI AATT 5 cut(s) 35, 94, 535, 658, 733
MlyI GAGTC 3 cut(s) 110, 166, 722
MmeI TCCRAC 2 cut(s) 200, 656
MnlI CCTC 8 cut(s) 62, 108, 133, 221, 224, 490, 590, 617
MseI TTAA 1 cut(s) 198
MspI CCGG 2 cut(s) 317, 621
MunI CAATTG 1 cut(s) 35
MwoI GCNNNNNNNGC 3 cut(s) 274, 485, 494
NdeII GATC 5 cut(s) 12, 362, 520, 652, 777
NlaIV GGNNCC 4 cut(s) 153, 474, 576, 577
NmuCI GTSAC 1 cut(s) 312
PkrI GCNGC 3 cut(s) 221, 276, 279
PleI GAGTC 3 cut(s) 109, 166, 721
PpsI GAGTC 3 cut(s) 109, 166, 721
Ppu21I YACGTR 1 cut(s) 755
PpuMI RGGWCCY 1 cut(s) 575
Psp5II RGGWCCY 1 cut(s) 575
PspEI GGTNACC 1 cut(s) 312
PspN4I GGNNCC 4 cut(s) 153, 474, 576, 577
PspPI GGNCC 2 cut(s) 239, 575
PspPPI RGGWCCY 1 cut(s) 575
RsaI GTAC 2 cut(s) 474, 721
RsaNI GTAC 2 cut(s) 473, 720
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 3 cut(s) 220, 275, 278
Sau3AI GATC 5 cut(s) 12, 362, 520, 652, 777
Sau96I GGNCC 2 cut(s) 239, 575
SchI GAGTC 3 cut(s) 110, 166, 722
SduI GDGCHC 1 cut(s) 688
SfaNI GCATC 3 cut(s) 277, 296, 331
SinI GGWCC 2 cut(s) 239, 575
Sse9I AATT 5 cut(s) 35, 94, 535, 658, 733
SspMI CTAG 1 cut(s) 225
StyI CCWWGG 1 cut(s) 583
TaaI ACNGT 3 cut(s) 527, 558, 674
TaiI ACGT 3 cut(s) 182, 465, 757
TaqII GACCGA 1 cut(s) 5
TasI AATT 5 cut(s) 35, 94, 535, 658, 733
TatI WGTACW 1 cut(s) 719
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 2 cut(s) 505, 530
TseFI GTSAC 1 cut(s) 312
TseI GCWGC 3 cut(s) 219, 274, 277
Tsp45I GTSAC 1 cut(s) 312
TspDTI ATGAA 3 cut(s) 314, 441, 527
TspRI CASTG 2 cut(s) 505, 530
VpaK11BI GGWCC 2 cut(s) 239, 575
XapI RAATTY 2 cut(s) 658, 733
XcmI CCANNNNNNNNNTGG 2 cut(s) 524, 698
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.