Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000441.1

Orthogroup ID

OG0006004

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2423

Gene Structure 2423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000441.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

gtttatctgggttatgctagagaccccaaaacagagagagagatagagaacaaaaccaacatggagctcagcttagattccaacatggtcttcgtccccaagaccatctccgagtttctgtcacaagtctcggccgttaaagacggcgctcagaggtcgttgaagcgtgaagagtatgtgaaaagactcgaagatgaaatgaggaagatcgaggttttcaagagggagcttcctctgtgtatggttatattgaaagatgcgattgagagattgaaagaggaagtaatgcagtgcgggaaagtggaagatcgggcggtgattgaagagttcataccgttgaagaagaaggatgagaatgaaggggtagtttcggaaaaggagaatagtgacatgaagagctggatgagctctgctcagctctggagcactaatatcaacgttgattacagcaaatcaggactcaaaatgagaaatgaggatgatgaccggtctgtgcctgagaacccaattgagataagtaataagagaagcaggggaggggcgtttgtgccattcaagggaaattatgagtctggttttgcgaggacttgtgtgaaggaagacaaggaggtttcacaggtgccaagcctttctctgatgactccaacgtctgaacttggtggctttaataatgcaaactctaagagcagcactagaggaggttctggtccatctttggcgaagttacagattgagcatcagcagcagcaacaatgttttaggaaacaaaggcgatgctggtcaccggagcttcatcgccgatttgttgatgcacttcaacagcttgggggatcacaagtagctactcctaaacagattagagagcttatgcaggtagatggtctcaccaatgatgaagtgaaaagccatttgcagaaatacagacttcacgtccgaaaggtaccagcctcttctgctggtgaagccagtggtttatggatgaaccaagatcactgtggagacaattcaaaggcaaatacttcacagtctggttctccacagggtcccctccttggtatggagtttgccaaaggtggtcaatctacaaccggaggcaacagcacagaaacagaagaagatgatcagaattcagacggccacagttggaaaggggcacgccacaactccggtggagatgtagagtcttgtattaatcccctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

400

Amino Acids

44.74

Weight (kDa)

6.1

Isoelectric Point (pI)

58.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37180 AT4G37180 AT4G37180
fragaria_vesca	FvH4_1g15450 FvH4_1g15470 FvH4_1g15470 FvH4_1g15470 FvH4_1g15470
malus_domestica	MD02G1166700.v1.1 MD15G1279200.v1.1
prunus_persica	Prupe.7G138100_v2.0.a1 Prupe.7G138100_v2.0.a1
pyrus_communis	pycom02g13400 pycom15g24200
rosa_chinensis	RchiOBHm_Chr2g0104701
rosa_laevigata	RLG00000017352
rosa_multiflora	Rmu_ssc0000441.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138820
rosa_rugosa	Rorug02G0121700 Rorug02G0121800
rosa_samantha	Rh2AG172100 Rh2BG179700 Rh2CG177200 Rh2DG178400
rosa_wichuraiana	Rw0G008620 Rw2G013470 Rw2G013530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	646
Acc36I	ACCTGC	1 cut(s)	862
Acc65I	GGTACC	1 cut(s)	940
AccB1I	GGYRCC	2 cut(s)	619, 940
AciI	CCGC	2 cut(s)	294, 314
AclI	AACGTT	1 cut(s)	438
AclWI	GGATC	1 cut(s)	838
AcoI	YGGCCR	2 cut(s)	132, 1135
AcsI	RAATTY	1 cut(s)	1126
AfaI	GTAC	1 cut(s)	942
AfiI	CCNNNNNNNGG	3 cut(s)	557, 1052, 1057
AgeI	ACCGGT	1 cut(s)	486
AgsI	TTSAA	9 cut(s)	163, 220, 253, 274, 323, 340, 556, 818, 1008
AhdI	GACNNNNNGTC	1 cut(s)	929
AjiI	CACGTC	1 cut(s)	931
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
Alw21I	GWGCWC	3 cut(s)	69, 410, 428
Alw26I	GTCTC	4 cut(s)	15, 133, 887, 993
AlwI	GGATC	1 cut(s)	838
AoxI	GGCC	2 cut(s)	132, 1135
ApeKI	GCWGC	3 cut(s)	687, 742, 745
ApoI	RAATTY	1 cut(s)	1126
AseI	ATTAAT	1 cut(s)	1191
AsiGI	ACCGGT	1 cut(s)	486
Asp718I	GGTACC	1 cut(s)	940
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	707, 1043
AsuHPI	GGTGA	4 cut(s)	328, 774, 877, 971
AvaII	GGWCC	2 cut(s)	707, 1043
BaeGI	GKGCMC	1 cut(s)	1156
BanI	GGYRCC	2 cut(s)	619, 940
BanII	GRGCYC	2 cut(s)	69, 410
BarI	GAAGNNNNNNTAC	2 cut(s)	315, 347
BbsI	GAAGAC	2 cut(s)	82, 606
Bbv12I	GWGCWC	3 cut(s)	69, 410, 428
BbvI	GCAGC	3 cut(s)	699, 754, 757
BccI	CCATC	3 cut(s)	113, 718, 872
BceAI	ACGGC	3 cut(s)	119, 160, 1150
BclI	TGATCA	1 cut(s)	1120
BcoDI	GTCTC	4 cut(s)	15, 133, 887, 993
BfaI	CTAG	2 cut(s)	18, 693
BfoI	RGCGCY	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	862
BisI	GCNGC	3 cut(s)	688, 743, 746
BlpI	GCTNAGC	2 cut(s)	68, 414
BlsI	GCNGC	3 cut(s)	689, 744, 747
Bme18I	GGWCC	2 cut(s)	707, 1043
BmeRI	GACNNNNNGTC	1 cut(s)	929
BmgBI	CACGTC	1 cut(s)	931
BmgT120I	GGNCC	2 cut(s)	707, 1043
BmiI	GGNNCC	4 cut(s)	621, 942, 1044, 1045
BmsI	GCATC	4 cut(s)	247, 745, 764, 799
BpiI	GAAGAC	2 cut(s)	82, 606
BplI	GAGNNNNNCTC	2 cut(s)	397, 429
BpmI	CTGGAG	1 cut(s)	442
Bpu1102I	GCTNAGC	2 cut(s)	68, 414
BsaI	GGTCTC	2 cut(s)	15, 887
BsaJI	CCNNGG	1 cut(s)	1051
BsaWI	WCCGGW	4 cut(s)	486, 784, 1088, 1166
Bsc4I	CCNNNNNNNGG	3 cut(s)	557, 1052, 1057
Bse118I	RCCGGY	1 cut(s)	486
Bse1I	ACTGG	1 cut(s)	966
BseDI	CCNNGG	1 cut(s)	1051
BseGI	GGATG	4 cut(s)	355, 408, 484, 984
BseLI	CCNNNNNNNGG	3 cut(s)	557, 1052, 1057
BseMII	CTCAG	4 cut(s)	82, 164, 428, 489
BseNI	ACTGG	1 cut(s)	966
BseRI	GAGGAG	1 cut(s)	711
BseSI	GKGCMC	1 cut(s)	1156
BseX3I	CGGCCG	1 cut(s)	132
BseXI	GCAGC	3 cut(s)	699, 754, 757
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	134, 1137
BshNI	GGYRCC	2 cut(s)	619, 940
BshTI	ACCGGT	1 cut(s)	486
BsiEI	CGRYCG	1 cut(s)	135
BsiHKAI	GWGCWC	3 cut(s)	69, 410, 428
BsiSI	CCGG	4 cut(s)	487, 785, 1089, 1167
BslFI	GGGAC	2 cut(s)	80, 1029
BslI	CCNNNNNNNGG	3 cut(s)	557, 1052, 1057
BsmAI	GTCTC	4 cut(s)	15, 133, 887, 993
BsmFI	GGGAC	2 cut(s)	80, 1029
BsnI	GGCC	2 cut(s)	134, 1137
Bso31I	GGTCTC	2 cut(s)	15, 887
Bsp1286I	GDGCHC	4 cut(s)	69, 410, 428, 1156
Bsp143I	GATC	5 cut(s)	207, 307, 830, 988, 1120
Bsp1720I	GCTNAGC	2 cut(s)	68, 414
BspACI	CCGC	2 cut(s)	294, 314
BspANI	GGCC	2 cut(s)	134, 1137
BspCNI	CTCAG	4 cut(s)	81, 163, 427, 490
BspLI	GGNNCC	4 cut(s)	621, 942, 1044, 1045
BspMI	ACCTGC	1 cut(s)	862
BspPI	GGATC	1 cut(s)	838
BspQI	GCTCTTC	1 cut(s)	389
BspT107I	GGYRCC	2 cut(s)	619, 940
BspTNI	GGTCTC	2 cut(s)	15, 887
BsrFI	RCCGGY	1 cut(s)	486
BsrI	ACTGG	1 cut(s)	966
BssAI	RCCGGY	1 cut(s)	486
BssECI	CCNNGG	1 cut(s)	1051
BssMI	GATC	5 cut(s)	207, 307, 830, 988, 1120
BssT1I	CCWWGG	1 cut(s)	1051
Bst4CI	ACNGT	4 cut(s)	336, 995, 1026, 1142
Bst6I	CTCTTC	4 cut(s)	165, 318, 389, 955
BstC8I	GCNNGC	1 cut(s)	1156
BstDEI	CTNAG	6 cut(s)	68, 73, 150, 414, 498, 681
BstEII	GGTNACC	1 cut(s)	780
BstF5I	GGATG	4 cut(s)	355, 408, 484, 984
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	5 cut(s)	210, 310, 833, 991, 1123
BstMAI	GTCTC	4 cut(s)	15, 133, 887, 993
BstMBI	GATC	5 cut(s)	207, 307, 830, 988, 1120
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	4 cut(s)	405, 742, 953, 962
BstPI	GGTNACC	1 cut(s)	780
BstSLI	GKGCMC	1 cut(s)	1156
BstV1I	GCAGC	3 cut(s)	699, 754, 757
BstV2I	GAAGAC	2 cut(s)	82, 606
BstZI	CGGCCG	1 cut(s)	132
BsuRI	GGCC	2 cut(s)	134, 1137
BtgZI	GCGATG	2 cut(s)	779, 787
BtrI	CACGTC	1 cut(s)	931
BtsCI	GGATG	4 cut(s)	355, 408, 484, 984
BtsI	GCAGTG	1 cut(s)	296
BtsIMutI	CAGTG	3 cut(s)	296, 973, 991
BveI	ACCTGC	1 cut(s)	862
Cac8I	GCNNGC	1 cut(s)	1156
CfoI	GCGC	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	486
Cfr13I	GGNCC	2 cut(s)	707, 1043
Csp6I	GTAC	1 cut(s)	941
CspAI	ACCGGT	1 cut(s)	486
CspCI	CAANNNNNGTGG	2 cut(s)	1150, 1185
CviAII	CATG	3 cut(s)	61, 85, 391
CviQI	GTAC	1 cut(s)	941
DdeI	CTNAG	6 cut(s)	68, 73, 150, 414, 498, 681
DpnI	GATC	5 cut(s)	209, 309, 832, 990, 1122
DpnII	GATC	5 cut(s)	207, 307, 830, 988, 1120
DrdI	GACNNNNNNGTC	1 cut(s)	646
DriI	GACNNNNNGTC	1 cut(s)	929
DseDI	GACNNNNNNGTC	1 cut(s)	646
EaeI	YGGCCR	2 cut(s)	132, 1135
EagI	CGGCCG	1 cut(s)	132
Eam1104I	CTCTTC	4 cut(s)	165, 318, 389, 955
Eam1105I	GACNNNNNGTC	1 cut(s)	929
EarI	CTCTTC	4 cut(s)	165, 318, 389, 955
Ecl136II	GAGCTC	2 cut(s)	67, 408
EclXI	CGGCCG	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	1051
Eco24I	GRGCYC	2 cut(s)	69, 410
Eco31I	GGTCTC	2 cut(s)	15, 887
Eco47I	GGWCC	2 cut(s)	707, 1043
Eco52I	CGGCCG	1 cut(s)	132
Eco53kI	GAGCTC	2 cut(s)	67, 408
Eco91I	GGTNACC	1 cut(s)	780
EcoICRI	GAGCTC	2 cut(s)	67, 408
EcoO109I	RGGNCCY	1 cut(s)	1043
EcoO65I	GGTNACC	1 cut(s)	780
EcoRI	GAATTC	1 cut(s)	1126
EcoT14I	CCWWGG	1 cut(s)	1051
EcoT38I	GRGCYC	2 cut(s)	69, 410
ErhI	CCWWGG	1 cut(s)	1051
FaeI	CATG	3 cut(s)	64, 88, 394
FaqI	GGGAC	2 cut(s)	80, 1029
FatI	CATG	3 cut(s)	60, 84, 390
FauI	CCCGC	1 cut(s)	287
FbaI	TGATCA	1 cut(s)	1120
Fnu4HI	GCNGC	3 cut(s)	688, 743, 746
FokI	GGATG	4 cut(s)	362, 415, 491, 991
FriOI	GRGCYC	2 cut(s)	69, 410
Fsp4HI	GCNGC	3 cut(s)	688, 743, 746
FspBI	CTAG	2 cut(s)	18, 693
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	3 cut(s)	688, 743, 746
GsuI	CTGGAG	1 cut(s)	442
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	2 cut(s)	134, 1137
HapII	CCGG	4 cut(s)	487, 785, 1089, 1167
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	64, 88, 394
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HinfI	GANTC	6 cut(s)	77, 186, 459, 569, 640, 1181
HpaII	CCGG	4 cut(s)	487, 785, 1089, 1167
HphI	GGTGA	4 cut(s)	328, 774, 877, 971
Hpy188I	TCNGA	8 cut(s)	112, 153, 373, 636, 652, 935, 1125, 1132
Hpy188III	TCNNGA	3 cut(s)	220, 421, 456
HpyAV	CCTTC	3 cut(s)	340, 353, 589
HpyCH4III	ACNGT	4 cut(s)	336, 995, 1026, 1142
HpyCH4IV	ACGT	3 cut(s)	438, 647, 930
HpyCH4V	TGCA	5 cut(s)	289, 674, 812, 871, 913
HpyF10VI	GCNNNNNNNGC	4 cut(s)	405, 742, 953, 962
HpyF3I	CTNAG	6 cut(s)	68, 73, 150, 414, 498, 681
HpySE526I	ACGT	3 cut(s)	438, 647, 930
Hsp92II	CATG	3 cut(s)	64, 88, 394
HspAI	GCGC	1 cut(s)	147
KflI	GGGWCCC	1 cut(s)	1043
KpnI	GGTACC	1 cut(s)	944
Ksp22I	TGATCA	1 cut(s)	1120
Kzo9I	GATC	5 cut(s)	207, 307, 830, 988, 1120
LguI	GCTCTTC	1 cut(s)	389
LmnI	GCTCC	4 cut(s)	64, 226, 423, 787
Lsp1109I	GCAGC	3 cut(s)	699, 754, 757
LweI	GCATC	4 cut(s)	247, 745, 764, 799
MaeI	CTAG	2 cut(s)	18, 693
MaeII	ACGT	3 cut(s)	438, 647, 930
MaeIII	GTNAC	4 cut(s)	120, 386, 723, 780
MalI	GATC	5 cut(s)	209, 309, 832, 990, 1122
MboI	GATC	5 cut(s)	207, 307, 830, 988, 1120
MfeI	CAATTG	1 cut(s)	507
MhlI	GDGCHC	4 cut(s)	69, 410, 428, 1156
MluCI	AATT	4 cut(s)	507, 562, 1003, 1126
MlyI	GAGTC	5 cut(s)	180, 453, 578, 634, 1190
MmeI	TCCRAC	3 cut(s)	105, 668, 1124
MseI	TTAA	3 cut(s)	138, 666, 1191
MspI	CCGG	4 cut(s)	487, 785, 1089, 1167
MunI	CAATTG	1 cut(s)	507
MwoI	GCNNNNNNNGC	4 cut(s)	405, 742, 953, 962
NdeII	GATC	5 cut(s)	207, 307, 830, 988, 1120
NlaIII	CATG	3 cut(s)	64, 88, 394
NlaIV	GGNNCC	4 cut(s)	621, 942, 1044, 1045
NmeAIII	GCCGAG	1 cut(s)	110
NmuCI	GTSAC	3 cut(s)	120, 386, 780
PciSI	GCTCTTC	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	77
PinAI	ACCGGT	1 cut(s)	486
PkrI	GCNGC	3 cut(s)	689, 744, 747
PleI	GAGTC	5 cut(s)	180, 453, 577, 634, 1189
PpsI	GAGTC	5 cut(s)	180, 453, 577, 634, 1189
PpuMI	RGGWCCY	1 cut(s)	1043
PshBI	ATTAAT	1 cut(s)	1191
Psp124BI	GAGCTC	2 cut(s)	69, 410
Psp1406I	AACGTT	1 cut(s)	438
Psp5II	RGGWCCY	1 cut(s)	1043
PspEI	GGTNACC	1 cut(s)	780
PspN4I	GGNNCC	4 cut(s)	621, 942, 1044, 1045
PspPI	GGNCC	2 cut(s)	707, 1043
PspPPI	RGGWCCY	1 cut(s)	1043
RsaI	GTAC	1 cut(s)	942
RsaNI	GTAC	1 cut(s)	941
SacI	GAGCTC	2 cut(s)	69, 410
SapI	GCTCTTC	1 cut(s)	389
SaqAI	TTAA	3 cut(s)	138, 666, 1191
SatI	GCNGC	3 cut(s)	688, 743, 746
Sau3AI	GATC	5 cut(s)	207, 307, 830, 988, 1120
Sau96I	GGNCC	2 cut(s)	707, 1043
SchI	GAGTC	5 cut(s)	180, 453, 578, 634, 1190
SduI	GDGCHC	4 cut(s)	69, 410, 428, 1156
SfaNI	GCATC	4 cut(s)	247, 745, 764, 799
SinI	GGWCC	2 cut(s)	707, 1043
Sse9I	AATT	4 cut(s)	507, 562, 1003, 1126
SsiI	CCGC	2 cut(s)	294, 314
SspMI	CTAG	2 cut(s)	18, 693
SstI	GAGCTC	2 cut(s)	69, 410
StyI	CCWWGG	1 cut(s)	1051
TaaI	ACNGT	4 cut(s)	336, 995, 1026, 1142
TaiI	ACGT	3 cut(s)	441, 650, 933
TaqI	TCGA	2 cut(s)	189, 210
TasI	AATT	4 cut(s)	507, 562, 1003, 1126
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	3 cut(s)	138, 666, 1191
Tru9I	TTAA	3 cut(s)	138, 666, 1191
TscAI	CASTG	3 cut(s)	296, 973, 998
TseFI	GTSAC	3 cut(s)	120, 386, 780
TseI	GCWGC	3 cut(s)	687, 742, 745
Tsp45I	GTSAC	3 cut(s)	120, 386, 780
TspDTI	ATGAA	7 cut(s)	210, 319, 372, 407, 782, 909, 995
TspRI	CASTG	3 cut(s)	296, 973, 998
VpaK11BI	GGWCC	2 cut(s)	707, 1043
VspI	ATTAAT	1 cut(s)	1191
XapI	RAATTY	1 cut(s)	1126
XcmI	CCANNNNNNNNNTGG	2 cut(s)	992, 1166
XspI	CTAG	2 cut(s)	18, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.