Rroxscaffold_2G00138820
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006004
Physical Location & Seq
Reverse (-)
77020870 .. 77023427
2558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00138820.1

Sequence Viewer

Length: 1164 bp
ATGGAGCTCAGCTTAGATTCCAACATGGTCTTCGTCCCAAAGTCCATCTCCGAGTTTCTGTCACAAGTCTCGGTCGTTAAAGACGGCGCTCAGAGGTCGTTGAAGCTTGAAGAGTATGTGAAAAGACTCGAAGATGAAATGAGGAAGATCGAGGTTTTCAAGAGGGAGCTTCCGCTGTGTATGGTTATATTGAAAGATGCGATTGAGAGGTTGAAAGAGGAAGTAATGCAGTGCGGGAAAGTGGAAGATCGGGCGGTGATTGAAGAGTTCATACCGTTGAAGAAGAAGGATGAGAATGAAGGGGTAGTTTCGGAAAAGGAGAATAGTGACATGAAGAGCTGGATGAGCTCTGCTCAGCTCTGGAGCACTAATATCAACTTTGATTACAGCAAATCAGGACTCAAAACGCAGAGAAATGAGGATGATGATAGGTCTGTGCCTGAGAACCCAATTGAGATAAGTAATAAGAGAAGCAGGGGAGGGGCGTTTGTGCCATTCAAGGGAAATTATGAGTCTGGTTTTGCAAGGACTTGTGTGAAGGAAGACAAGGAGGTTTCACAGGTGCCAAGCCTTTCTCTGATGACTCCAACGTCTGAACTTGGTGGCTTTAATAATGCAAACTCTAAGAGCAGCACTAGAGGAGGTTCTGGTCCAACTTTGGTGAAGTTACAGATTGAGCCTCAGCAGCAGTCAGAGCATCAGCAGCAGCAACAATGTTTTAGGAAACAAAGGCGATGCTGGTCACCAGAGCTTCATCGCCGATTTGTTGACGCGCTTCAACAGCTTGGGGGATCACAAGTAGCTACTCCTAAACAGATTAGAGAGCTTATGCAGGTAGATGGTCTCACCAATGATGAAGTGAAAAGCCATTTGCAGAAATACAGACTTCACGTCCGAAAGGTACCAGCTTCCTCTGCTGGTGAAGCCAGTGGTTTATGGATGAACCAAGATCACTGTGGAGACAATTCAAAGGCAAATACTTCACAGTCTGGTTCTCCACAGGGTCCCCTCCTTGGCATGGAGTTTGCCAAAGGTGGTCAATCTACAACCGGAGGCGACAGCACAGAAACAGAAGAAGATGATCAGAATTCAGATGGCCACAGTTGGAAAGGGGCACGTCACAACTCCGGTGGAGATGTAGAGTCTTGTACTAATCCCCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

387

Amino Acids

43.19

Weight (kDa)

5.69

Isoelectric Point (pI)

61.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 4 - 76 1.9e-29 HHO5-like, N-terminal domain
Myb_DNA-binding PF00249 244 - 295 1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 589
Acc36I ACCTGC 1 cut(s) 823
Acc65I GGTACC 1 cut(s) 901
AccB1I GGYRCC 2 cut(s) 562, 901
AccII CGCG 1 cut(s) 773
AciI CCGC 3 cut(s) 173, 234, 254
AclWI GGATC 1 cut(s) 799
AcoI YGGCCR 1 cut(s) 1096
AcsI RAATTY 1 cut(s) 1087
AfaI GTAC 2 cut(s) 903, 1150
AfiI CCNNNNNNNGG 3 cut(s) 500, 1013, 1018
AhdI GACNNNNNGTC 1 cut(s) 890
AjiI CACGTC 2 cut(s) 892, 1118
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
Alw21I GWGCWC 3 cut(s) 9, 350, 368
Alw26I GTCTC 3 cut(s) 73, 848, 954
AlwI GGATC 1 cut(s) 799
AoxI GGCC 1 cut(s) 1096
ApeKI GCWGC 4 cut(s) 630, 685, 703, 706
ApoI RAATTY 1 cut(s) 1087
Asp718I GGTACC 1 cut(s) 901
AspLEI GCGC 2 cut(s) 89, 775
AspS9I GGNCC 2 cut(s) 650, 1004
AsuHPI GGTGA 5 cut(s) 268, 673, 735, 838, 932
AvaII GGWCC 2 cut(s) 650, 1004
BaeGI GKGCMC 1 cut(s) 1117
BalI TGGCCA 1 cut(s) 1098
BanI GGYRCC 2 cut(s) 562, 901
BanII GRGCYC 2 cut(s) 9, 350
BarI GAAGNNNNNNTAC 2 cut(s) 255, 287
BbsI GAAGAC 2 cut(s) 22, 549
Bbv12I GWGCWC 3 cut(s) 9, 350, 368
BbvCI CCTCAGC 1 cut(s) 681
BbvI GCAGC 4 cut(s) 642, 697, 715, 718
BccI CCATC 3 cut(s) 53, 833, 1088
BceAI ACGGC 1 cut(s) 100
BclI TGATCA 1 cut(s) 1081
BcoDI GTCTC 3 cut(s) 73, 848, 954
BfaI CTAG 1 cut(s) 636
BfoI RGCGCY 1 cut(s) 90
BfuAI ACCTGC 1 cut(s) 823
BisI GCNGC 4 cut(s) 631, 686, 704, 707
BlpI GCTNAGC 2 cut(s) 8, 354
BlsI GCNGC 4 cut(s) 632, 687, 705, 708
Bme18I GGWCC 2 cut(s) 650, 1004
BmeRI GACNNNNNGTC 1 cut(s) 890
BmgBI CACGTC 2 cut(s) 892, 1118
BmgT120I GGNCC 2 cut(s) 650, 1004
BmiI GGNNCC 4 cut(s) 564, 903, 1005, 1006
BmsI GCATC 3 cut(s) 187, 706, 725
BpiI GAAGAC 2 cut(s) 22, 549
BplI GAGNNNNNCTC 2 cut(s) 337, 369
BpmI CTGGAG 1 cut(s) 382
Bpu10I CCTNAGC 1 cut(s) 681
Bpu1102I GCTNAGC 2 cut(s) 8, 354
BsaI GGTCTC 1 cut(s) 848
BsaJI CCNNGG 1 cut(s) 1012
BsaWI WCCGGW 2 cut(s) 1049, 1127
Bsc4I CCNNNNNNNGG 3 cut(s) 500, 1013, 1018
Bse1I ACTGG 1 cut(s) 927
BseDI CCNNGG 1 cut(s) 1012
BseGI GGATG 4 cut(s) 295, 348, 427, 945
BseLI CCNNNNNNNGG 3 cut(s) 500, 1013, 1018
BseMII CTCAG 5 cut(s) 22, 104, 368, 432, 695
BseNI ACTGG 1 cut(s) 927
BseRI GAGGAG 1 cut(s) 654
BseSI GKGCMC 1 cut(s) 1117
BseXI GCAGC 4 cut(s) 642, 697, 715, 718
Bsh1236I CGCG 1 cut(s) 773
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 1 cut(s) 1098
BshNI GGYRCC 2 cut(s) 562, 901
BsiEI CGRYCG 1 cut(s) 75
BsiHKAI GWGCWC 3 cut(s) 9, 350, 368
BsiSI CCGG 2 cut(s) 1050, 1128
BslFI GGGAC 2 cut(s) 20, 990
BslI CCNNNNNNNGG 3 cut(s) 500, 1013, 1018
BsmAI GTCTC 3 cut(s) 73, 848, 954
BsmFI GGGAC 2 cut(s) 20, 990
BsnI GGCC 1 cut(s) 1098
Bso31I GGTCTC 1 cut(s) 848
Bsp1286I GDGCHC 4 cut(s) 9, 350, 368, 1117
Bsp143I GATC 5 cut(s) 147, 247, 791, 949, 1081
Bsp1720I GCTNAGC 2 cut(s) 8, 354
BspACI CCGC 3 cut(s) 173, 234, 254
BspANI GGCC 1 cut(s) 1098
BspCNI CTCAG 5 cut(s) 21, 103, 367, 433, 694
BspFNI CGCG 1 cut(s) 773
BspLI GGNNCC 4 cut(s) 564, 903, 1005, 1006
BspMI ACCTGC 1 cut(s) 823
BspPI GGATC 1 cut(s) 799
BspQI GCTCTTC 1 cut(s) 329
BspT107I GGYRCC 2 cut(s) 562, 901
BspTNI GGTCTC 1 cut(s) 848
BsrI ACTGG 1 cut(s) 927
BssECI CCNNGG 1 cut(s) 1012
BssMI GATC 5 cut(s) 147, 247, 791, 949, 1081
BssT1I CCWWGG 1 cut(s) 1012
Bst4CI ACNGT 4 cut(s) 276, 956, 987, 1103
Bst6I CTCTTC 3 cut(s) 105, 258, 329
BstDEI CTNAG 7 cut(s) 8, 13, 90, 354, 441, 624, 681
BstEII GGTNACC 1 cut(s) 741
BstF5I GGATG 4 cut(s) 295, 348, 427, 945
BstFNI CGCG 1 cut(s) 773
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 2 cut(s) 89, 775
BstKTI GATC 5 cut(s) 150, 250, 794, 952, 1084
BstMAI GTCTC 3 cut(s) 73, 848, 954
BstMBI GATC 5 cut(s) 147, 247, 791, 949, 1081
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 7 cut(s) 345, 685, 694, 703, 781, 914, 923
BstPI GGTNACC 1 cut(s) 741
BstSLI GKGCMC 1 cut(s) 1117
BstUI CGCG 1 cut(s) 773
BstV1I GCAGC 4 cut(s) 642, 697, 715, 718
BstV2I GAAGAC 2 cut(s) 22, 549
BsuRI GGCC 1 cut(s) 1098
BtgZI GCGATG 2 cut(s) 740, 748
BtrI CACGTC 2 cut(s) 892, 1118
BtsCI GGATG 4 cut(s) 295, 348, 427, 945
BtsI GCAGTG 1 cut(s) 236
BtsIMutI CAGTG 3 cut(s) 236, 934, 952
BveI ACCTGC 1 cut(s) 823
CfoI GCGC 2 cut(s) 89, 775
Cfr13I GGNCC 2 cut(s) 650, 1004
CseI GACGC 1 cut(s) 779
Csp6I GTAC 2 cut(s) 902, 1149
CspCI CAANNNNNGTGG 2 cut(s) 1111, 1146
CviAII CATG 3 cut(s) 25, 331, 1018
CviQI GTAC 2 cut(s) 902, 1149
DdeI CTNAG 7 cut(s) 8, 13, 90, 354, 441, 624, 681
DpnI GATC 5 cut(s) 149, 249, 793, 951, 1083
DpnII GATC 5 cut(s) 147, 247, 791, 949, 1081
DrdI GACNNNNNNGTC 1 cut(s) 589
DriI GACNNNNNGTC 1 cut(s) 890
DseDI GACNNNNNNGTC 1 cut(s) 589
EaeI YGGCCR 1 cut(s) 1096
Eam1104I CTCTTC 3 cut(s) 105, 258, 329
Eam1105I GACNNNNNGTC 1 cut(s) 890
EarI CTCTTC 3 cut(s) 105, 258, 329
Ecl136II GAGCTC 2 cut(s) 7, 348
Eco130I CCWWGG 1 cut(s) 1012
Eco24I GRGCYC 2 cut(s) 9, 350
Eco31I GGTCTC 1 cut(s) 848
Eco47I GGWCC 2 cut(s) 650, 1004
Eco53kI GAGCTC 2 cut(s) 7, 348
Eco91I GGTNACC 1 cut(s) 741
EcoICRI GAGCTC 2 cut(s) 7, 348
EcoO109I RGGNCCY 1 cut(s) 1004
EcoO65I GGTNACC 1 cut(s) 741
EcoRI GAATTC 1 cut(s) 1087
EcoT14I CCWWGG 1 cut(s) 1012
EcoT38I GRGCYC 2 cut(s) 9, 350
ErhI CCWWGG 1 cut(s) 1012
FaeI CATG 3 cut(s) 28, 334, 1021
FaqI GGGAC 2 cut(s) 20, 990
FatI CATG 3 cut(s) 24, 330, 1017
FauI CCCGC 1 cut(s) 227
FbaI TGATCA 1 cut(s) 1081
Fnu4HI GCNGC 4 cut(s) 631, 686, 704, 707
FokI GGATG 4 cut(s) 302, 355, 434, 952
FriOI GRGCYC 2 cut(s) 9, 350
Fsp4HI GCNGC 4 cut(s) 631, 686, 704, 707
FspBI CTAG 1 cut(s) 636
GlaI GCGC 2 cut(s) 88, 774
GluI GCNGC 4 cut(s) 631, 686, 704, 707
GsuI CTGGAG 1 cut(s) 382
HaeII RGCGCY 1 cut(s) 90
HaeIII GGCC 1 cut(s) 1098
HapII CCGG 2 cut(s) 1050, 1128
HgaI GACGC 1 cut(s) 779
HhaI GCGC 2 cut(s) 89, 775
Hin1II CATG 3 cut(s) 28, 334, 1021
Hin6I GCGC 2 cut(s) 87, 773
HinP1I GCGC 2 cut(s) 87, 773
HincII GTYRAC 1 cut(s) 769
HindII GTYRAC 1 cut(s) 769
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 6 cut(s) 17, 126, 399, 512, 583, 1142
HpaII CCGG 2 cut(s) 1050, 1128
HphI GGTGA 5 cut(s) 268, 673, 735, 838, 932
Hpy166II GTNNAC 1 cut(s) 769
Hpy188I TCNGA 9 cut(s) 52, 93, 313, 579, 595, 694, 896, 1086, 1093
Hpy188III TCNNGA 3 cut(s) 160, 361, 396
Hpy8I GTNNAC 1 cut(s) 769
HpyAV CCTTC 3 cut(s) 280, 293, 532
HpyCH4III ACNGT 4 cut(s) 276, 956, 987, 1103
HpyCH4IV ACGT 3 cut(s) 590, 891, 1117
HpyCH4V TGCA 5 cut(s) 229, 524, 617, 832, 874
HpyF10VI GCNNNNNNNGC 7 cut(s) 345, 685, 694, 703, 781, 914, 923
HpyF3I CTNAG 7 cut(s) 8, 13, 90, 354, 441, 624, 681
HpySE526I ACGT 3 cut(s) 590, 891, 1117
Hsp92II CATG 3 cut(s) 28, 334, 1021
HspAI GCGC 2 cut(s) 87, 773
KflI GGGWCCC 1 cut(s) 1004
KpnI GGTACC 1 cut(s) 905
Ksp22I TGATCA 1 cut(s) 1081
Kzo9I GATC 5 cut(s) 147, 247, 791, 949, 1081
LguI GCTCTTC 1 cut(s) 329
LmnI GCTCC 3 cut(s) 4, 166, 363
Lsp1109I GCAGC 4 cut(s) 642, 697, 715, 718
LweI GCATC 3 cut(s) 187, 706, 725
MaeI CTAG 1 cut(s) 636
MaeII ACGT 3 cut(s) 590, 891, 1117
MaeIII GTNAC 5 cut(s) 60, 326, 666, 741, 1118
MalI GATC 5 cut(s) 149, 249, 793, 951, 1083
MboI GATC 5 cut(s) 147, 247, 791, 949, 1081
MfeI CAATTG 1 cut(s) 450
MhlI GDGCHC 4 cut(s) 9, 350, 368, 1117
MlsI TGGCCA 1 cut(s) 1098
MluCI AATT 4 cut(s) 450, 505, 964, 1087
MluNI TGGCCA 1 cut(s) 1098
MlyI GAGTC 5 cut(s) 120, 393, 521, 577, 1151
MmeI TCCRAC 4 cut(s) 45, 611, 677, 1085
Mox20I TGGCCA 1 cut(s) 1098
MscI TGGCCA 1 cut(s) 1098
MseI TTAA 2 cut(s) 78, 609
Msp20I TGGCCA 1 cut(s) 1098
MspA1I CMGCKG 1 cut(s) 175
MspI CCGG 2 cut(s) 1050, 1128
MunI CAATTG 1 cut(s) 450
MvnI CGCG 1 cut(s) 773
MwoI GCNNNNNNNGC 7 cut(s) 345, 685, 694, 703, 781, 914, 923
NdeII GATC 5 cut(s) 147, 247, 791, 949, 1081
NlaIII CATG 3 cut(s) 28, 334, 1021
NlaIV GGNNCC 4 cut(s) 564, 903, 1005, 1006
NmuCI GTSAC 4 cut(s) 60, 326, 741, 1118
PciSI GCTCTTC 1 cut(s) 329
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 4 cut(s) 632, 687, 705, 708
PleI GAGTC 5 cut(s) 120, 393, 520, 577, 1150
PpsI GAGTC 5 cut(s) 120, 393, 520, 577, 1150
PpuMI RGGWCCY 1 cut(s) 1004
Psp124BI GAGCTC 2 cut(s) 9, 350
Psp5II RGGWCCY 1 cut(s) 1004
PspEI GGTNACC 1 cut(s) 741
PspN4I GGNNCC 4 cut(s) 564, 903, 1005, 1006
PspPI GGNCC 2 cut(s) 650, 1004
PspPPI RGGWCCY 1 cut(s) 1004
RsaI GTAC 2 cut(s) 903, 1150
RsaNI GTAC 2 cut(s) 902, 1149
SacI GAGCTC 2 cut(s) 9, 350
SapI GCTCTTC 1 cut(s) 329
SaqAI TTAA 2 cut(s) 78, 609
SatI GCNGC 4 cut(s) 631, 686, 704, 707
Sau3AI GATC 5 cut(s) 147, 247, 791, 949, 1081
Sau96I GGNCC 2 cut(s) 650, 1004
SchI GAGTC 5 cut(s) 120, 393, 521, 577, 1151
SduI GDGCHC 4 cut(s) 9, 350, 368, 1117
SfaNI GCATC 3 cut(s) 187, 706, 725
SinI GGWCC 2 cut(s) 650, 1004
Sse9I AATT 4 cut(s) 450, 505, 964, 1087
SsiI CCGC 3 cut(s) 173, 234, 254
SspMI CTAG 1 cut(s) 636
SstI GAGCTC 2 cut(s) 9, 350
StyI CCWWGG 1 cut(s) 1012
TaaI ACNGT 4 cut(s) 276, 956, 987, 1103
TaiI ACGT 3 cut(s) 593, 894, 1120
TaqI TCGA 2 cut(s) 129, 150
TaqII GACCGA 1 cut(s) 61
TasI AATT 4 cut(s) 450, 505, 964, 1087
TatI WGTACW 1 cut(s) 1148
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 2 cut(s) 78, 609
Tru9I TTAA 2 cut(s) 78, 609
TscAI CASTG 3 cut(s) 236, 934, 959
TseFI GTSAC 4 cut(s) 60, 326, 741, 1118
TseI GCWGC 4 cut(s) 630, 685, 703, 706
Tsp45I GTSAC 4 cut(s) 60, 326, 741, 1118
TspDTI ATGAA 7 cut(s) 150, 259, 312, 347, 743, 870, 956
TspRI CASTG 3 cut(s) 236, 934, 959
VpaK11BI GGWCC 2 cut(s) 650, 1004
XapI RAATTY 1 cut(s) 1087
XcmI CCANNNNNNNNNTGG 1 cut(s) 953
XspI CTAG 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.