FvH4_1g15470
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0006004
Physical Location & Seq
Forward (+)
8774117 .. 8776529
2413 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g15470.t2

Sequence Viewer

Length: 1104 bp
ATGGAGCTCAGCTTAGATTCCAACGTCGTCTTCGTCCCCAAGACCATCTCCGAATTTCTCTTCCAACTCTCCGCCGTCAAAGACGGCGCTGACAGGTCGTCAAAGCTTGCAGAATACAGGAAGAGACTCGAAGATGAAATGAGGAAGATCGAGGTTTTCAAAAGGGAGCTTCCTCTTTGTATGGTCATTTTGAAGGATGCGATTGAGAGATTGAAAGAGGAAGTAATGCAGTGCGGGGAAGTGGAAGATCGGACGGTGGTGGTTGAGGAGTTCATACCGATGAAGAAGAAGAAGGATGAGAATGAAGGGGTAGTTTCGGAAAAGGAGAATAGTGATATGAAGAGCTGGATGAGCTCTGTTCAGCTCTGGAGTACTAACGTTGATCACAGCAAATCAGAGCTCAATCTGAGAAATGAGGAAGATGATCGGTCTGTGCCGGAGAATCCGATTGAGATGAGTAAGAAGAGAAGCAGGGGAGGGGCATTTGTGCCATTCAAGGGAAACTATGTGAAGGAAGGCAACGAGGTTTCAGAGGTGCCAAGCCTTTCTTTGATGACTCCAATGTGTGAAGTTGGTGGGTCTAACAATGGAAACTCTAAGAGCAGCGCTAGAGGAGGGTCTGGTCTATCTTTGGTGAAGTTACAGATTGAGGCTCAGCAGCTGTCACAGCAACAATGCTTTAGGAAACAAAGGCGATGCTGGTCACCGGAGCTTCATCGTCGATTTGTTGATGCCCTTCAACAGCTTGGGGGATCACAAGTAGCTACTCCTAAACAGATAAGAGAGCTTATGCAGGTAGATGGTCTCACCAATGACGAAGTGAAAAGCCATTTGCAGAAATACAGACTTCACGTCCGAAAGGTACCCGCTTCTTCTGCTGCTGAAGCCAACGGTTTATGGATGAACCAAGATCACTGTGGAGACAATTCCAAGGCAAATACTTCACAGTCTCGTTCTCCACAGGGACCCCTCCCTCGTACGGAGTTTGCCAAAGGTGGTCAATCTACAACCGGGGGCGACAGCACAGAAACAGAAGAAGATGATCAGAAATCAGATGGCTACAGTTGGAAAGGGGCACGCCACAACTCCAGTGGAGATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

368

Amino Acids

41.14

Weight (kDa)

6.01

Isoelectric Point (pI)

56.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 5 - 76 2.3e-27 HHO5-like, N-terminal domain
Myb_DNA-binding PF00249 231 - 279 2.9e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 784
Acc65I GGTACC 1 cut(s) 862
AccB1I GGYRCC 2 cut(s) 535, 862
AciI CCGC 3 cut(s) 72, 234, 867
AclI AACGTT 1 cut(s) 378
AclWI GGATC 1 cut(s) 760
AcsI RAATTY 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 903
AfaI GTAC 3 cut(s) 373, 864, 979
AfeI AGCGCT 1 cut(s) 607
AfiI CCNNNNNNNGG 2 cut(s) 497, 979
AgsI TTSAA 5 cut(s) 160, 193, 214, 496, 740
AhdI GACNNNNNGTC 2 cut(s) 97, 851
AjiI CACGTC 1 cut(s) 853
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
Alw21I GWGCWC 3 cut(s) 9, 356, 402
Alw26I GTCTC 4 cut(s) 118, 809, 915, 954
AlwI GGATC 1 cut(s) 760
AlwNI CAGNNNCTG 1 cut(s) 661
Aor51HI AGCGCT 1 cut(s) 607
ApeKI GCWGC 3 cut(s) 603, 658, 878
ApoI RAATTY 1 cut(s) 53
Asp718I GGTACC 1 cut(s) 862
AspLEI GCGC 2 cut(s) 89, 608
AspS9I GGNCC 1 cut(s) 965
AsuC2I CCSGG 1 cut(s) 1012
AsuHPI GGTGA 3 cut(s) 646, 696, 799
AvaII GGWCC 1 cut(s) 965
BaeGI GKGCMC 1 cut(s) 1078
BanI GGYRCC 2 cut(s) 535, 862
BanII GRGCYC 3 cut(s) 9, 356, 402
BbsI GAAGAC 1 cut(s) 22
Bbv12I GWGCWC 3 cut(s) 9, 356, 402
BbvI GCAGC 3 cut(s) 615, 670, 865
BccI CCATC 3 cut(s) 53, 794, 1049
BceAI ACGGC 2 cut(s) 59, 100
BclI TGATCA 2 cut(s) 382, 1042
BcnI CCSGG 1 cut(s) 1012
BcoDI GTCTC 4 cut(s) 118, 809, 915, 954
BfaI CTAG 1 cut(s) 609
BfmI CTRYAG 1 cut(s) 1060
BfoI RGCGCY 2 cut(s) 90, 609
BfuAI ACCTGC 1 cut(s) 784
BisI GCNGC 3 cut(s) 604, 659, 879
BlpI GCTNAGC 2 cut(s) 8, 654
BlsI GCNGC 3 cut(s) 605, 660, 880
BmcAI AGTACT 1 cut(s) 373
Bme1390I CCNGG 1 cut(s) 1012
Bme18I GGWCC 1 cut(s) 965
BmeRI GACNNNNNGTC 2 cut(s) 97, 851
BmgBI CACGTC 1 cut(s) 853
BmgT120I GGNCC 1 cut(s) 965
BmiI GGNNCC 4 cut(s) 537, 864, 966, 967
BmrFI CCNGG 1 cut(s) 1012
BmsI GCATC 3 cut(s) 187, 686, 721
BpiI GAAGAC 1 cut(s) 22
BpmI CTGGAG 2 cut(s) 388, 1072
Bpu1102I GCTNAGC 2 cut(s) 8, 654
BpuMI CCSGG 1 cut(s) 1012
BsaI GGTCTC 1 cut(s) 809
BsaJI CCNNGG 2 cut(s) 930, 1011
BsaWI WCCGGW 1 cut(s) 706
Bsc4I CCNNNNNNNGG 2 cut(s) 497, 979
Bse1I ACTGG 1 cut(s) 1089
BseDI CCNNGG 2 cut(s) 930, 1011
BseGI GGATG 4 cut(s) 202, 301, 354, 906
BseLI CCNNNNNNNGG 2 cut(s) 497, 979
BseMII CTCAG 3 cut(s) 22, 398, 668
BseNI ACTGG 1 cut(s) 1089
BseRI GAGGAG 2 cut(s) 281, 627
BseSI GKGCMC 1 cut(s) 1078
BseXI GCAGC 3 cut(s) 615, 670, 865
BshNI GGYRCC 2 cut(s) 535, 862
BsiHKAI GWGCWC 3 cut(s) 9, 356, 402
BsiSI CCGG 3 cut(s) 437, 707, 1011
BsiWI CGTACG 1 cut(s) 977
BslFI GGGAC 2 cut(s) 20, 978
BslI CCNNNNNNNGG 2 cut(s) 497, 979
BsmAI GTCTC 4 cut(s) 118, 809, 915, 954
BsmFI GGGAC 2 cut(s) 20, 978
Bso31I GGTCTC 1 cut(s) 809
Bsp1286I GDGCHC 4 cut(s) 9, 356, 402, 1078
Bsp143I GATC 7 cut(s) 147, 247, 382, 424, 752, 910, 1042
Bsp1720I GCTNAGC 2 cut(s) 8, 654
BspACI CCGC 3 cut(s) 72, 234, 867
BspCNI CTCAG 3 cut(s) 21, 399, 667
BspLI GGNNCC 4 cut(s) 537, 864, 966, 967
BspMI ACCTGC 1 cut(s) 784
BspPI GGATC 1 cut(s) 760
BspQI GCTCTTC 1 cut(s) 335
BspT107I GGYRCC 2 cut(s) 535, 862
BspTNI GGTCTC 1 cut(s) 809
BsrI ACTGG 1 cut(s) 1089
BssECI CCNNGG 2 cut(s) 930, 1011
BssMI GATC 7 cut(s) 147, 247, 382, 424, 752, 910, 1042
BssT1I CCWWGG 1 cut(s) 930
Bst4CI ACNGT 5 cut(s) 256, 893, 917, 948, 1064
Bst6I CTCTTC 4 cut(s) 65, 116, 335, 458
BstC8I GCNNGC 2 cut(s) 108, 1078
BstDEI CTNAG 5 cut(s) 8, 13, 407, 597, 654
BstEII GGTNACC 1 cut(s) 702
BstF5I GGATG 4 cut(s) 202, 301, 354, 906
BstH2I RGCGCY 2 cut(s) 90, 609
BstHHI GCGC 2 cut(s) 89, 608
BstKTI GATC 7 cut(s) 150, 250, 385, 427, 755, 913, 1045
BstMAI GTCTC 4 cut(s) 118, 809, 915, 954
BstMBI GATC 7 cut(s) 147, 247, 382, 424, 752, 910, 1042
BstMWI GCNNNNNNNGC 4 cut(s) 351, 667, 875, 884
BstPI GGTNACC 1 cut(s) 702
BstSCI CCNGG 1 cut(s) 1010
BstSFI CTRYAG 1 cut(s) 1060
BstSLI GKGCMC 1 cut(s) 1078
BstV1I GCAGC 3 cut(s) 615, 670, 865
BstV2I GAAGAC 1 cut(s) 22
BtgZI GCGATG 1 cut(s) 709
BtrI CACGTC 1 cut(s) 853
BtsCI GGATG 4 cut(s) 202, 301, 354, 906
BtsI GCAGTG 1 cut(s) 236
BtsIMutI CAGTG 3 cut(s) 236, 913, 1096
BveI ACCTGC 1 cut(s) 784
Cac8I GCNNGC 2 cut(s) 108, 1078
CaiI CAGNNNCTG 1 cut(s) 661
CfoI GCGC 2 cut(s) 89, 608
Cfr13I GGNCC 1 cut(s) 965
Csp6I GTAC 3 cut(s) 372, 863, 978
CspCI CAANNNNNGTGG 1 cut(s) 1072
CviQI GTAC 3 cut(s) 372, 863, 978
DdeI CTNAG 5 cut(s) 8, 13, 407, 597, 654
DpnI GATC 7 cut(s) 149, 249, 384, 426, 754, 912, 1044
DpnII GATC 7 cut(s) 147, 247, 382, 424, 752, 910, 1042
DriI GACNNNNNGTC 2 cut(s) 97, 851
Eam1104I CTCTTC 4 cut(s) 65, 116, 335, 458
Eam1105I GACNNNNNGTC 2 cut(s) 97, 851
EarI CTCTTC 4 cut(s) 65, 116, 335, 458
EciI GGCGGA 1 cut(s) 61
Ecl136II GAGCTC 3 cut(s) 7, 354, 400
Eco130I CCWWGG 1 cut(s) 930
Eco24I GRGCYC 3 cut(s) 9, 356, 402
Eco31I GGTCTC 1 cut(s) 809
Eco47I GGWCC 1 cut(s) 965
Eco47III AGCGCT 1 cut(s) 607
Eco53kI GAGCTC 3 cut(s) 7, 354, 400
Eco57I CTGAAG 1 cut(s) 903
Eco91I GGTNACC 1 cut(s) 702
EcoICRI GAGCTC 3 cut(s) 7, 354, 400
EcoO109I RGGNCCY 1 cut(s) 965
EcoO65I GGTNACC 1 cut(s) 702
EcoT14I CCWWGG 1 cut(s) 930
EcoT38I GRGCYC 3 cut(s) 9, 356, 402
ErhI CCWWGG 1 cut(s) 930
FaiI YATR 6 cut(s) 182, 275, 338, 507, 791, 898
FalI AAGNNNNNCTT 2 cut(s) 532, 564
FaqI GGGAC 2 cut(s) 20, 978
FauI CCCGC 2 cut(s) 227, 874
FbaI TGATCA 2 cut(s) 382, 1042
Fnu4HI GCNGC 3 cut(s) 604, 659, 879
FokI GGATG 4 cut(s) 209, 308, 361, 913
FriOI GRGCYC 3 cut(s) 9, 356, 402
Fsp4HI GCNGC 3 cut(s) 604, 659, 879
FspBI CTAG 1 cut(s) 609
GlaI GCGC 2 cut(s) 88, 607
GluI GCNGC 3 cut(s) 604, 659, 879
GsuI CTGGAG 2 cut(s) 388, 1072
HaeII RGCGCY 2 cut(s) 90, 609
HapII CCGG 3 cut(s) 437, 707, 1011
HhaI GCGC 2 cut(s) 89, 608
Hin6I GCGC 2 cut(s) 87, 606
HinP1I GCGC 2 cut(s) 87, 606
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 4 cut(s) 17, 126, 442, 556
HpaII CCGG 3 cut(s) 437, 707, 1011
HphI GGTGA 3 cut(s) 646, 696, 799
Hpy188III TCNNGA 1 cut(s) 367
Hpy99I CGWCG 2 cut(s) 29, 723
HpyAV CCTTC 6 cut(s) 187, 286, 299, 505, 509, 746
HpyCH4III ACNGT 5 cut(s) 256, 893, 917, 948, 1064
HpyCH4IV ACGT 3 cut(s) 24, 378, 852
HpyCH4V TGCA 4 cut(s) 110, 229, 793, 835
HpyF10VI GCNNNNNNNGC 4 cut(s) 351, 667, 875, 884
HpyF3I CTNAG 5 cut(s) 8, 13, 407, 597, 654
HpySE526I ACGT 3 cut(s) 24, 378, 852
HspAI GCGC 2 cut(s) 87, 606
KflI GGGWCCC 1 cut(s) 965
KpnI GGTACC 1 cut(s) 866
Ksp22I TGATCA 2 cut(s) 382, 1042
Kzo9I GATC 7 cut(s) 147, 247, 382, 424, 752, 910, 1042
LguI GCTCTTC 1 cut(s) 335
LmnI GCTCC 3 cut(s) 4, 166, 709
Lsp1109I GCAGC 3 cut(s) 615, 670, 865
LweI GCATC 3 cut(s) 187, 686, 721
MaeI CTAG 1 cut(s) 609
MaeII ACGT 3 cut(s) 24, 378, 852
MaeIII GTNAC 3 cut(s) 639, 663, 702
MalI GATC 7 cut(s) 149, 249, 384, 426, 754, 912, 1044
MboI GATC 7 cut(s) 147, 247, 382, 424, 752, 910, 1042
MhlI GDGCHC 4 cut(s) 9, 356, 402, 1078
MluCI AATT 2 cut(s) 53, 925
MlyI GAGTC 2 cut(s) 120, 550
MmeI TCCRAC 3 cut(s) 45, 88, 1046
MslI CAYNNNNRTG 1 cut(s) 278
MspA1I CMGCKG 1 cut(s) 661
MspI CCGG 3 cut(s) 437, 707, 1011
MspR9I CCNGG 1 cut(s) 1012
MwoI GCNNNNNNNGC 4 cut(s) 351, 667, 875, 884
NciI CCSGG 1 cut(s) 1012
NdeII GATC 7 cut(s) 147, 247, 382, 424, 752, 910, 1042
NlaIV GGNNCC 4 cut(s) 537, 864, 966, 967
NmuCI GTSAC 2 cut(s) 663, 702
PciSI GCTCTTC 1 cut(s) 335
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PfeI GAWTC 2 cut(s) 17, 442
Pfl23II CGTACG 1 cut(s) 977
PkrI GCNGC 3 cut(s) 605, 660, 880
PleI GAGTC 2 cut(s) 120, 550
PpsI GAGTC 2 cut(s) 120, 550
PpuMI RGGWCCY 1 cut(s) 965
Psp124BI GAGCTC 3 cut(s) 9, 356, 402
Psp1406I AACGTT 1 cut(s) 378
Psp5II RGGWCCY 1 cut(s) 965
PspEI GGTNACC 1 cut(s) 702
PspLI CGTACG 1 cut(s) 977
PspN4I GGNNCC 4 cut(s) 537, 864, 966, 967
PspPI GGNCC 1 cut(s) 965
PspPPI RGGWCCY 1 cut(s) 965
PstNI CAGNNNCTG 1 cut(s) 661
PvuII CAGCTG 1 cut(s) 661
RsaI GTAC 3 cut(s) 373, 864, 979
RsaNI GTAC 3 cut(s) 372, 863, 978
RseI CAYNNNNRTG 1 cut(s) 278
SacI GAGCTC 3 cut(s) 9, 356, 402
SapI GCTCTTC 1 cut(s) 335
SatI GCNGC 3 cut(s) 604, 659, 879
Sau3AI GATC 7 cut(s) 147, 247, 382, 424, 752, 910, 1042
Sau96I GGNCC 1 cut(s) 965
ScaI AGTACT 1 cut(s) 373
SchI GAGTC 2 cut(s) 120, 550
ScrFI CCNGG 1 cut(s) 1012
SduI GDGCHC 4 cut(s) 9, 356, 402, 1078
SfaNI GCATC 3 cut(s) 187, 686, 721
SfcI CTRYAG 1 cut(s) 1060
SinI GGWCC 1 cut(s) 965
SmiMI CAYNNNNRTG 1 cut(s) 278
Sse9I AATT 2 cut(s) 53, 925
SsiI CCGC 3 cut(s) 72, 234, 867
SspMI CTAG 1 cut(s) 609
SstI GAGCTC 3 cut(s) 9, 356, 402
StyD4I CCNGG 1 cut(s) 1010
StyI CCWWGG 1 cut(s) 930
TaaI ACNGT 5 cut(s) 256, 893, 917, 948, 1064
TaiI ACGT 3 cut(s) 27, 381, 855
TaqI TCGA 3 cut(s) 129, 150, 721
TaqII GACCGA 1 cut(s) 417
TasI AATT 2 cut(s) 53, 925
TatI WGTACW 1 cut(s) 371
TfiI GAWTC 2 cut(s) 17, 442
TscAI CASTG 3 cut(s) 236, 920, 1096
TseFI GTSAC 2 cut(s) 663, 702
TseI GCWGC 3 cut(s) 603, 658, 878
Tsp45I GTSAC 2 cut(s) 663, 702
TspDTI ATGAA 7 cut(s) 150, 262, 296, 318, 353, 704, 917
TspGWI ACGGA 1 cut(s) 995
TspRI CASTG 3 cut(s) 236, 920, 1096
VpaK11BI GGWCC 1 cut(s) 965
XapI RAATTY 1 cut(s) 53
XcmI CCANNNNNNNNNTGG 2 cut(s) 914, 1088
XspI CTAG 1 cut(s) 609
ZrmI AGTACT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.