RLG00000017352
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006004
Physical Location & Seq
Forward (+)
15565991 .. 15567824
1834 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017352

Sequence Viewer

Length: 1155 bp
ATGGAGTTCAGCTTAGATTCCAACATGGTCTTCGTCCCAAAGACCATCTCCGAGTTTCTGTCACAAGTCTCGGTCGTTAAAGACGGCGCTCAGAGGTCGTTGAAGCTTGAAGAGTATGTGAAAAGACTCGAAGATGAAATGAGGAAGATCGAGGTTTTCAAGAGGGAGCTTCCGCTGTGTATGGTTATATTGAAAGATGCGATTGAGAGATTGAAAGAGGAAGTAATGCAGTGCGGGAAAGTGGAAGATCGGGCGGTGATTGAAGAGTTCATACCGTTGAAGAAGAAGGATGAGAATGAAGGGGTAGTTTCGGAAAAGGAGAATAGTGACATGAAGAGCTGGATGAGCTCTGCTCAGCTCTGGAGCACTAATATCAACTTTGATTACAGCAAATTAGGACTCAAAACGAGAAATGAGGATGATGATCGGTCTGTGCCTGAGAACCCAATTGAGATAAGTAATAAGAGAAGCAGGGGAGGGGCGTTTGTGCCATTCAAGGGAAATTATGAGTCTGGTTTTGCAAGGACTTGTGTGAAGGAAGACAAGGAGGTTTCACAGGTGCCAAGCCTTTCTCTGATGACTCCAACGTCTGAACTTGGTGGCTTTAATAATGCAAACTCTAAGAGCAGCACTAGAGGAGGTTCTGGTCCATCTTTGGTGAAGTTACAGATTGAGCCTCAGCAGCAGTCACAGCAGCAGCAACAATGTTTTAGGAAACAAAGGCGATGCTGGTCACCGGAGCTTCATCGCCGATTTGTTGACGCGCTTCAACAGCTTGGGGGATCACAAGTAGCTACTCCTAAACAGATTAGAGAGCTTATGCAGGTAGATGGTCTCACCAATGATGAAGTGAAAAGCCATTTGCAGAAATACAGACTTCACGTCCGAAAGGTACCAGCTTCTTCTGCTGGTGAAGCCAGTGGTTTATGGATGAACCAAGATCACTGTGGAGACAATTCAAAGGCAAATACTTCACAGTCTGGTTCTCCACAGGGTCCCCTCCTTGGCATGGAGTTTGCCAAAGGTGGTCAATCTACAACCGGAGGCGACAGCACAGAAACAGAAGAAGATGATCAGAATTCAGATGGCCACAGTTGGAAAGGGGCACGCCACAACTCTGGTGGAGATGTAGAGTCTTGTACTAATCCCCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

385

Amino Acids

42.86

Weight (kDa)

5.73

Isoelectric Point (pI)

62.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 4 - 76 1.3e-29 HHO5-like, N-terminal domain
Myb_DNA-binding PF00249 241 - 292 1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 586
Acc36I ACCTGC 1 cut(s) 814
Acc65I GGTACC 1 cut(s) 892
AccB1I GGYRCC 2 cut(s) 559, 892
AccII CGCG 1 cut(s) 764
AciI CCGC 3 cut(s) 173, 234, 254
AclWI GGATC 1 cut(s) 790
AcoI YGGCCR 1 cut(s) 1087
AcsI RAATTY 1 cut(s) 1078
AfaI GTAC 2 cut(s) 894, 1141
AfiI CCNNNNNNNGG 3 cut(s) 497, 1004, 1009
AhdI GACNNNNNGTC 1 cut(s) 881
AjiI CACGTC 1 cut(s) 883
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
Alw21I GWGCWC 2 cut(s) 350, 368
Alw26I GTCTC 3 cut(s) 73, 839, 945
AlwI GGATC 1 cut(s) 790
AoxI GGCC 1 cut(s) 1087
ApeKI GCWGC 4 cut(s) 627, 682, 694, 697
ApoI RAATTY 1 cut(s) 1078
Asp718I GGTACC 1 cut(s) 892
AspLEI GCGC 2 cut(s) 89, 766
AspS9I GGNCC 2 cut(s) 647, 995
AsuHPI GGTGA 5 cut(s) 268, 670, 726, 829, 923
AvaII GGWCC 2 cut(s) 647, 995
BaeGI GKGCMC 1 cut(s) 1108
BalI TGGCCA 1 cut(s) 1089
BanI GGYRCC 2 cut(s) 559, 892
BanII GRGCYC 1 cut(s) 350
BarI GAAGNNNNNNTAC 2 cut(s) 255, 287
BbsI GAAGAC 2 cut(s) 22, 546
Bbv12I GWGCWC 2 cut(s) 350, 368
BbvCI CCTCAGC 1 cut(s) 678
BbvI GCAGC 4 cut(s) 639, 694, 706, 709
BccI CCATC 4 cut(s) 53, 658, 824, 1079
BceAI ACGGC 1 cut(s) 100
BclI TGATCA 1 cut(s) 1072
BcoDI GTCTC 3 cut(s) 73, 839, 945
BfaI CTAG 1 cut(s) 633
BfoI RGCGCY 1 cut(s) 90
BfuAI ACCTGC 1 cut(s) 814
BisI GCNGC 4 cut(s) 628, 683, 695, 698
BlpI GCTNAGC 1 cut(s) 354
BlsI GCNGC 4 cut(s) 629, 684, 696, 699
Bme18I GGWCC 2 cut(s) 647, 995
BmeRI GACNNNNNGTC 1 cut(s) 881
BmgBI CACGTC 1 cut(s) 883
BmgT120I GGNCC 2 cut(s) 647, 995
BmiI GGNNCC 4 cut(s) 561, 894, 996, 997
BmsI GCATC 2 cut(s) 187, 716
BpiI GAAGAC 2 cut(s) 22, 546
BplI GAGNNNNNCTC 2 cut(s) 337, 369
BpmI CTGGAG 1 cut(s) 382
Bpu10I CCTNAGC 1 cut(s) 678
Bpu1102I GCTNAGC 1 cut(s) 354
BsaBI GATNNNNATC 1 cut(s) 423
BsaI GGTCTC 1 cut(s) 839
BsaJI CCNNGG 1 cut(s) 1003
BsaWI WCCGGW 2 cut(s) 736, 1040
Bsc4I CCNNNNNNNGG 3 cut(s) 497, 1004, 1009
Bse1I ACTGG 1 cut(s) 918
Bse8I GATNNNNATC 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 1003
BseGI GGATG 4 cut(s) 295, 348, 424, 936
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 3 cut(s) 497, 1004, 1009
BseMII CTCAG 4 cut(s) 104, 368, 429, 692
BseNI ACTGG 1 cut(s) 918
BseRI GAGGAG 1 cut(s) 651
BseSI GKGCMC 1 cut(s) 1108
BseXI GCAGC 4 cut(s) 639, 694, 706, 709
Bsh1236I CGCG 1 cut(s) 764
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 1 cut(s) 1089
BshNI GGYRCC 2 cut(s) 559, 892
BsiEI CGRYCG 1 cut(s) 75
BsiHKAI GWGCWC 2 cut(s) 350, 368
BsiSI CCGG 2 cut(s) 737, 1041
BslFI GGGAC 2 cut(s) 20, 981
BslI CCNNNNNNNGG 3 cut(s) 497, 1004, 1009
BsmAI GTCTC 3 cut(s) 73, 839, 945
BsmFI GGGAC 2 cut(s) 20, 981
BsnI GGCC 1 cut(s) 1089
Bso31I GGTCTC 1 cut(s) 839
Bsp1286I GDGCHC 3 cut(s) 350, 368, 1108
Bsp143I GATC 6 cut(s) 147, 247, 424, 782, 940, 1072
Bsp1720I GCTNAGC 1 cut(s) 354
BspACI CCGC 3 cut(s) 173, 234, 254
BspANI GGCC 1 cut(s) 1089
BspCNI CTCAG 4 cut(s) 103, 367, 430, 691
BspFNI CGCG 1 cut(s) 764
BspLI GGNNCC 4 cut(s) 561, 894, 996, 997
BspMI ACCTGC 1 cut(s) 814
BspPI GGATC 1 cut(s) 790
BspQI GCTCTTC 1 cut(s) 329
BspT107I GGYRCC 2 cut(s) 559, 892
BspTNI GGTCTC 1 cut(s) 839
BsrI ACTGG 1 cut(s) 918
BssECI CCNNGG 1 cut(s) 1003
BssMI GATC 6 cut(s) 147, 247, 424, 782, 940, 1072
BssT1I CCWWGG 1 cut(s) 1003
Bst4CI ACNGT 4 cut(s) 276, 947, 978, 1094
Bst6I CTCTTC 3 cut(s) 105, 258, 329
BstC8I GCNNGC 1 cut(s) 1108
BstDEI CTNAG 6 cut(s) 13, 90, 354, 438, 621, 678
BstEII GGTNACC 1 cut(s) 732
BstF5I GGATG 4 cut(s) 295, 348, 424, 936
BstFNI CGCG 1 cut(s) 764
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 2 cut(s) 89, 766
BstKTI GATC 6 cut(s) 150, 250, 427, 785, 943, 1075
BstMAI GTCTC 3 cut(s) 73, 839, 945
BstMBI GATC 6 cut(s) 147, 247, 424, 782, 940, 1072
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 6 cut(s) 345, 682, 691, 772, 905, 914
BstPI GGTNACC 1 cut(s) 732
BstSLI GKGCMC 1 cut(s) 1108
BstUI CGCG 1 cut(s) 764
BstV1I GCAGC 4 cut(s) 639, 694, 706, 709
BstV2I GAAGAC 2 cut(s) 22, 546
BstXI CCANNNNNNTGG 1 cut(s) 1118
BsuRI GGCC 1 cut(s) 1089
BtgZI GCGATG 2 cut(s) 731, 739
BtrI CACGTC 1 cut(s) 883
BtsCI GGATG 4 cut(s) 295, 348, 424, 936
BtsI GCAGTG 1 cut(s) 236
BtsIMutI CAGTG 3 cut(s) 236, 925, 943
BveI ACCTGC 1 cut(s) 814
Cac8I GCNNGC 1 cut(s) 1108
CfoI GCGC 2 cut(s) 89, 766
Cfr13I GGNCC 2 cut(s) 647, 995
CseI GACGC 1 cut(s) 770
Csp6I GTAC 2 cut(s) 893, 1140
CspCI CAANNNNNGTGG 2 cut(s) 1102, 1137
CviAII CATG 3 cut(s) 25, 331, 1009
CviQI GTAC 2 cut(s) 893, 1140
DdeI CTNAG 6 cut(s) 13, 90, 354, 438, 621, 678
DpnI GATC 6 cut(s) 149, 249, 426, 784, 942, 1074
DpnII GATC 6 cut(s) 147, 247, 424, 782, 940, 1072
DrdI GACNNNNNNGTC 1 cut(s) 586
DriI GACNNNNNGTC 1 cut(s) 881
DseDI GACNNNNNNGTC 1 cut(s) 586
EaeI YGGCCR 1 cut(s) 1087
Eam1104I CTCTTC 3 cut(s) 105, 258, 329
Eam1105I GACNNNNNGTC 1 cut(s) 881
EarI CTCTTC 3 cut(s) 105, 258, 329
Ecl136II GAGCTC 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 1003
Eco24I GRGCYC 1 cut(s) 350
Eco31I GGTCTC 1 cut(s) 839
Eco47I GGWCC 2 cut(s) 647, 995
Eco53kI GAGCTC 1 cut(s) 348
Eco91I GGTNACC 1 cut(s) 732
EcoICRI GAGCTC 1 cut(s) 348
EcoO109I RGGNCCY 1 cut(s) 995
EcoO65I GGTNACC 1 cut(s) 732
EcoRI GAATTC 1 cut(s) 1078
EcoT14I CCWWGG 1 cut(s) 1003
EcoT38I GRGCYC 1 cut(s) 350
ErhI CCWWGG 1 cut(s) 1003
FaeI CATG 3 cut(s) 28, 334, 1012
FaqI GGGAC 2 cut(s) 20, 981
FatI CATG 3 cut(s) 24, 330, 1008
FauI CCCGC 1 cut(s) 227
FbaI TGATCA 1 cut(s) 1072
Fnu4HI GCNGC 4 cut(s) 628, 683, 695, 698
FokI GGATG 4 cut(s) 302, 355, 431, 943
FriOI GRGCYC 1 cut(s) 350
Fsp4HI GCNGC 4 cut(s) 628, 683, 695, 698
FspBI CTAG 1 cut(s) 633
GlaI GCGC 2 cut(s) 88, 765
GluI GCNGC 4 cut(s) 628, 683, 695, 698
GsuI CTGGAG 1 cut(s) 382
HaeII RGCGCY 1 cut(s) 90
HaeIII GGCC 1 cut(s) 1089
HapII CCGG 2 cut(s) 737, 1041
HgaI GACGC 1 cut(s) 770
HhaI GCGC 2 cut(s) 89, 766
Hin1II CATG 3 cut(s) 28, 334, 1012
Hin6I GCGC 2 cut(s) 87, 764
HinP1I GCGC 2 cut(s) 87, 764
HincII GTYRAC 1 cut(s) 760
HindII GTYRAC 1 cut(s) 760
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 6 cut(s) 17, 126, 399, 509, 580, 1133
HpaII CCGG 2 cut(s) 737, 1041
HphI GGTGA 5 cut(s) 268, 670, 726, 829, 923
Hpy166II GTNNAC 1 cut(s) 760
Hpy188I TCNGA 8 cut(s) 52, 93, 313, 576, 592, 887, 1077, 1084
Hpy188III TCNNGA 2 cut(s) 160, 361
Hpy8I GTNNAC 1 cut(s) 760
HpyAV CCTTC 3 cut(s) 280, 293, 529
HpyCH4III ACNGT 4 cut(s) 276, 947, 978, 1094
HpyCH4IV ACGT 2 cut(s) 587, 882
HpyCH4V TGCA 5 cut(s) 229, 521, 614, 823, 865
HpyF10VI GCNNNNNNNGC 6 cut(s) 345, 682, 691, 772, 905, 914
HpyF3I CTNAG 6 cut(s) 13, 90, 354, 438, 621, 678
HpySE526I ACGT 2 cut(s) 587, 882
Hsp92II CATG 3 cut(s) 28, 334, 1012
HspAI GCGC 2 cut(s) 87, 764
KflI GGGWCCC 1 cut(s) 995
KpnI GGTACC 1 cut(s) 896
Ksp22I TGATCA 1 cut(s) 1072
Kzo9I GATC 6 cut(s) 147, 247, 424, 782, 940, 1072
LguI GCTCTTC 1 cut(s) 329
LmnI GCTCC 3 cut(s) 166, 363, 739
Lsp1109I GCAGC 4 cut(s) 639, 694, 706, 709
LweI GCATC 2 cut(s) 187, 716
MaeI CTAG 1 cut(s) 633
MaeII ACGT 2 cut(s) 587, 882
MaeIII GTNAC 5 cut(s) 60, 326, 663, 687, 732
MalI GATC 6 cut(s) 149, 249, 426, 784, 942, 1074
MboI GATC 6 cut(s) 147, 247, 424, 782, 940, 1072
MfeI CAATTG 1 cut(s) 447
MhlI GDGCHC 3 cut(s) 350, 368, 1108
MlsI TGGCCA 1 cut(s) 1089
MluCI AATT 5 cut(s) 392, 447, 502, 955, 1078
MluNI TGGCCA 1 cut(s) 1089
MlyI GAGTC 5 cut(s) 120, 393, 518, 574, 1142
MmeI TCCRAC 3 cut(s) 45, 608, 1076
Mox20I TGGCCA 1 cut(s) 1089
MscI TGGCCA 1 cut(s) 1089
MseI TTAA 2 cut(s) 78, 606
Msp20I TGGCCA 1 cut(s) 1089
MspA1I CMGCKG 1 cut(s) 175
MspI CCGG 2 cut(s) 737, 1041
MunI CAATTG 1 cut(s) 447
MvnI CGCG 1 cut(s) 764
MwoI GCNNNNNNNGC 6 cut(s) 345, 682, 691, 772, 905, 914
NdeII GATC 6 cut(s) 147, 247, 424, 782, 940, 1072
NlaIII CATG 3 cut(s) 28, 334, 1012
NlaIV GGNNCC 4 cut(s) 561, 894, 996, 997
NmuCI GTSAC 4 cut(s) 60, 326, 687, 732
PciSI GCTCTTC 1 cut(s) 329
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 4 cut(s) 629, 684, 696, 699
PleI GAGTC 5 cut(s) 120, 393, 517, 574, 1141
PpsI GAGTC 5 cut(s) 120, 393, 517, 574, 1141
PpuMI RGGWCCY 1 cut(s) 995
Psp124BI GAGCTC 1 cut(s) 350
Psp5II RGGWCCY 1 cut(s) 995
PspEI GGTNACC 1 cut(s) 732
PspN4I GGNNCC 4 cut(s) 561, 894, 996, 997
PspPI GGNCC 2 cut(s) 647, 995
PspPPI RGGWCCY 1 cut(s) 995
RsaI GTAC 2 cut(s) 894, 1141
RsaNI GTAC 2 cut(s) 893, 1140
SacI GAGCTC 1 cut(s) 350
SapI GCTCTTC 1 cut(s) 329
SaqAI TTAA 2 cut(s) 78, 606
SatI GCNGC 4 cut(s) 628, 683, 695, 698
Sau3AI GATC 6 cut(s) 147, 247, 424, 782, 940, 1072
Sau96I GGNCC 2 cut(s) 647, 995
SchI GAGTC 5 cut(s) 120, 393, 518, 574, 1142
SduI GDGCHC 3 cut(s) 350, 368, 1108
SfaNI GCATC 2 cut(s) 187, 716
SinI GGWCC 2 cut(s) 647, 995
Sse9I AATT 5 cut(s) 392, 447, 502, 955, 1078
SsiI CCGC 3 cut(s) 173, 234, 254
SspMI CTAG 1 cut(s) 633
SstI GAGCTC 1 cut(s) 350
StyI CCWWGG 1 cut(s) 1003
TaaI ACNGT 4 cut(s) 276, 947, 978, 1094
TaiI ACGT 2 cut(s) 590, 885
TaqI TCGA 2 cut(s) 129, 150
TaqII GACCGA 2 cut(s) 61, 417
TasI AATT 5 cut(s) 392, 447, 502, 955, 1078
TatI WGTACW 1 cut(s) 1139
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 2 cut(s) 78, 606
Tru9I TTAA 2 cut(s) 78, 606
TscAI CASTG 3 cut(s) 236, 925, 950
TseFI GTSAC 4 cut(s) 60, 326, 687, 732
TseI GCWGC 4 cut(s) 627, 682, 694, 697
Tsp45I GTSAC 4 cut(s) 60, 326, 687, 732
TspDTI ATGAA 7 cut(s) 150, 259, 312, 347, 734, 861, 947
TspRI CASTG 3 cut(s) 236, 925, 950
VpaK11BI GGWCC 2 cut(s) 647, 995
XapI RAATTY 1 cut(s) 1078
XcmI CCANNNNNNNNNTGG 2 cut(s) 944, 1118
XspI CTAG 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.