Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0006004

Physical Location & Seq

Genomic Coordinates Reverse (-)

15453688 .. 15456162

Gene Structure 2475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G138100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGAGCTGAGCTTGGACACCAGTCTGGTGTTTATCCCAAAAACAATCTCTGACTTCCTCGCGCAGCTCTCAACCATGGAAGATAGCTCTCAGAGGTCGTCAGAGCTTGATGCTTATGTGAAAAGGCTCGAAGATGAAATGAGAAAGATTGAAGTTTTCAAGCGCGAGCTTCCTCTTTGCATGCTGCTCTTAAAGGATGCAATTGAGAGGTTGAAGGAGAAAGTAATGCAGTGTAAGAAAATGGAAGATCGGCCTGTGATAGAAGAATTCATACCATTGAAGGGTAATCTGGATGAGAATGGAGGGGGAGTTTTGGGAAAGGAAAACAGTGACAAGAAGAACTGGATGAGCTCTGCTCAGCTTTGGAGCACAAGCCTCAATATTTTTGAGTACAACAAACACGACTCTGTATCAGGACTCAGAATGAGGAACGAAGAAGATGATCGGTCGGTGCCTGAGAACCCAATTGAGGCAAGTAATAACAGAGCCATGGGAAGGACATTTGTGCCATTCAAGGAACAATATGAGTCTGGTTTTACAGGAACTTGTCTTAAGGATGACAAGGAGGTCTCACAAGTCCCAAGCCTTTCTCTTATGACTCCATTGATGTCTGAAGCACTGGATGCTTCTACCAATACAAACATTAAGAGCAACAACAACTGCAGAGGTGGTTCAGGTTCTGGTTTGGCAGGTCAACTCAAATTACAGAACAAACCTCAACAGCAATCACAGCAGCAACAACCCTTTAGGAAGCAAAGGCGATGCTGGTCACCTGAGCTTCACCGCCGCTTTGTTGAATCTCTTCAACAGCTTGGAGGAACACAAGTAGCCACTCCTAAGCAGATAAGAGAGCTTATGCAGGTGGATGGTCTCACCAATGATGAAGTGAAAAGCCATTTGCAGAAATACAGGCTTCATGTACGAAAGCTACCGGCTTCTTCTGCTGCCAAAGGCAATGGCATATGGATGCCCCTAGATCACAGTGCAGACCATTCTAAGGCAAACAACTCACAGTCTGGTTCTCCACAAGGTCCTCTCCTTCCAGGTGAGTTTGCCAAAGGTCGATCTACAACTGGAGGTGAGTCGGATAACAGCAGAGAAGCAGAAGAAGATGAGAAATCAGATGGCCAGAGTTGGAAAGGTGGGCTTCTTCACAACAACCAAGGAGGAGATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

393

Amino Acids

43.84

Weight (kDa)

6.07

Isoelectric Point (pI)

57.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37180 AT4G37180 AT4G37180
fragaria_vesca	FvH4_1g15450 FvH4_1g15470 FvH4_1g15470 FvH4_1g15470 FvH4_1g15470
malus_domestica	MD02G1166700.v1.1 MD15G1279200.v1.1
prunus_persica	Prupe.7G138100_v2.0.a1 Prupe.7G138100_v2.0.a1
pyrus_communis	pycom02g13400 pycom15g24200
rosa_chinensis	RchiOBHm_Chr2g0104701
rosa_laevigata	RLG00000017352
rosa_multiflora	Rmu_ssc0000441.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138820
rosa_rugosa	Rorug02G0121700 Rorug02G0121800
rosa_samantha	Rh2AG172100 Rh2BG179700 Rh2CG177200 Rh2DG178400
rosa_wichuraiana	Rw0G008620 Rw2G013470 Rw2G013530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	850
AasI	GACNNNNNNGTC	1 cut(s)	566
Acc36I	ACCTGC	2 cut(s)	680, 850
AccB1I	GGYRCC	1 cut(s)	451
AccII	CGCG	2 cut(s)	62, 165
AciI	CCGC	2 cut(s)	784, 787
AcoI	YGGCCR	1 cut(s)	1126
AcsI	RAATTY	1 cut(s)	266
AcuI	CTGAAG	1 cut(s)	633
AfaI	GTAC	2 cut(s)	392, 921
AfiI	CCNNNNNNNGG	4 cut(s)	281, 469, 495, 997
AflII	CTTAAG	1 cut(s)	551
AgsI	TTSAA	7 cut(s)	152, 160, 214, 280, 514, 797, 806
AjnI	CCWGG	1 cut(s)	1042
Alw21I	GWGCWC	2 cut(s)	353, 371
Alw26I	GTCTC	2 cut(s)	574, 875
AlwNI	CAGNNNCTG	1 cut(s)	680
AoxI	GGCC	2 cut(s)	251, 1126
ApeKI	GCWGC	4 cut(s)	64, 184, 733, 944
ApoI	RAATTY	1 cut(s)	266
Asp700I	GAANNNNTTC	1 cut(s)	801
AspLEI	GCGC	2 cut(s)	64, 165
AspS9I	GGNCC	1 cut(s)	1031
AsuHPI	GGTGA	5 cut(s)	762, 773, 865, 1058, 1091
AvaII	GGWCC	1 cut(s)	1031
BalI	TGGCCA	1 cut(s)	1128
BanI	GGYRCC	1 cut(s)	451
BanII	GRGCYC	1 cut(s)	353
BarI	GAAGNNNNNNTAC	2 cut(s)	255, 287
Bbv12I	GWGCWC	2 cut(s)	353, 371
BbvI	GCAGC	4 cut(s)	76, 171, 745, 931
BccI	CCATC	2 cut(s)	860, 1118
BciT130I	CCWGG	1 cut(s)	1044
BcoDI	GTCTC	2 cut(s)	574, 875
BfaI	CTAG	1 cut(s)	974
BfmI	CTRYAG	1 cut(s)	661
BfrI	CTTAAG	1 cut(s)	551
BfuAI	ACCTGC	2 cut(s)	680, 850
BisI	GCNGC	5 cut(s)	65, 185, 734, 787, 945
BlpI	GCTNAGC	2 cut(s)	8, 357
BlsI	GCNGC	5 cut(s)	66, 186, 735, 788, 946
Bme1390I	CCNGG	1 cut(s)	1044
Bme18I	GGWCC	1 cut(s)	1031
BmgT120I	GGNCC	1 cut(s)	1031
BmiI	GGNNCC	1 cut(s)	453
BmrFI	CCNGG	1 cut(s)	1044
BmsI	GCATC	5 cut(s)	100, 187, 613, 752, 957
BoxI	GACNNNNGTC	1 cut(s)	21
BplI	GAGNNNNNCTC	2 cut(s)	340, 372
BpmI	CTGGAG	1 cut(s)	1095
Bpu10I	CCTNAGC	2 cut(s)	774, 837
Bpu1102I	GCTNAGC	2 cut(s)	8, 357
BsaI	GGTCTC	2 cut(s)	574, 875
BsaJI	CCNNGG	3 cut(s)	75, 489, 1162
BsaXI	ACNNNNNCTCC	3 cut(s)	294, 324, 1158
Bsc4I	CCNNNNNNNGG	4 cut(s)	281, 469, 495, 997
Bse118I	RCCGGY	1 cut(s)	931
Bse1I	ACTGG	4 cut(s)	21, 347, 624, 1078
Bse3DI	GCAATG	1 cut(s)	961
BseBI	CCWGG	1 cut(s)	1044
BseDI	CCNNGG	3 cut(s)	75, 489, 1162
BseGI	GGATG	7 cut(s)	202, 298, 351, 562, 628, 871, 972
BseLI	CCNNNNNNNGG	4 cut(s)	281, 469, 495, 997
BseMI	GCAATG	1 cut(s)	961
BseMII	CTCAG	5 cut(s)	104, 371, 433, 447, 765
BseNI	ACTGG	4 cut(s)	21, 347, 624, 1078
BseXI	GCAGC	4 cut(s)	76, 171, 745, 931
BsgI	GTGCAG	1 cut(s)	1005
Bsh1236I	CGCG	2 cut(s)	62, 165
Bsh1285I	CGRYCG	1 cut(s)	449
BshFI	GGCC	2 cut(s)	253, 1128
BshNI	GGYRCC	1 cut(s)	451
BsiEI	CGRYCG	1 cut(s)	449
BsiHKAI	GWGCWC	2 cut(s)	353, 371
BsiSI	CCGG	1 cut(s)	932
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	4 cut(s)	281, 469, 495, 997
BsmAI	GTCTC	2 cut(s)	574, 875
BsmFI	GGGAC	1 cut(s)	563
BsnI	GGCC	2 cut(s)	253, 1128
Bso31I	GGTCTC	2 cut(s)	574, 875
Bsp1286I	GDGCHC	2 cut(s)	353, 371
Bsp143I	GATC	4 cut(s)	247, 442, 976, 1064
Bsp1720I	GCTNAGC	2 cut(s)	8, 357
Bsp19I	CCATGG	2 cut(s)	75, 489
BspACI	CCGC	2 cut(s)	784, 787
BspANI	GGCC	2 cut(s)	253, 1128
BspCNI	CTCAG	5 cut(s)	103, 370, 432, 448, 766
BspFNI	CGCG	2 cut(s)	62, 165
BspLI	GGNNCC	1 cut(s)	453
BspMAI	CTGCAG	1 cut(s)	665
BspMI	ACCTGC	2 cut(s)	680, 850
BspT107I	GGYRCC	1 cut(s)	451
BspTI	CTTAAG	1 cut(s)	551
BspTNI	GGTCTC	2 cut(s)	574, 875
BsrDI	GCAATG	1 cut(s)	961
BsrFI	RCCGGY	1 cut(s)	931
BsrI	ACTGG	4 cut(s)	21, 347, 624, 1078
BssAI	RCCGGY	1 cut(s)	931
BssECI	CCNNGG	3 cut(s)	75, 489, 1162
BssMI	GATC	4 cut(s)	247, 442, 976, 1064
BssT1I	CCWWGG	3 cut(s)	75, 489, 1162
Bst2UI	CCWGG	1 cut(s)	1044
Bst4CI	ACNGT	3 cut(s)	329, 983, 1014
Bst6I	CTCTTC	1 cut(s)	807
BstAFI	CTTAAG	1 cut(s)	551
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstC8I	GCNNGC	2 cut(s)	167, 182
BstDEI	CTNAG	8 cut(s)	8, 90, 357, 419, 456, 774, 837, 996
BstDSI	CCRYGG	2 cut(s)	75, 489
BstEII	GGTNACC	1 cut(s)	768
BstF5I	GGATG	7 cut(s)	202, 298, 351, 562, 628, 871, 972
BstFNI	CGCG	2 cut(s)	62, 165
BstHHI	GCGC	2 cut(s)	64, 165
BstKTI	GATC	4 cut(s)	250, 445, 979, 1067
BstMAI	GTCTC	2 cut(s)	574, 875
BstMBI	GATC	4 cut(s)	247, 442, 976, 1064
BstMCI	CGRYCG	1 cut(s)	449
BstMWI	GCNNNNNNNGC	3 cut(s)	623, 730, 941
BstNI	CCWGG	1 cut(s)	1044
BstNSI	RCATGY	1 cut(s)	184
BstPAI	GACNNNNGTC	1 cut(s)	21
BstPI	GGTNACC	1 cut(s)	768
BstSCI	CCNGG	1 cut(s)	1042
BstSFI	CTRYAG	1 cut(s)	661
BstUI	CGCG	2 cut(s)	62, 165
BstV1I	GCAGC	4 cut(s)	76, 171, 745, 931
BsuRI	GGCC	2 cut(s)	253, 1128
BtgI	CCRYGG	2 cut(s)	75, 489
BtgZI	GCGATG	1 cut(s)	775
BtsCI	GGATG	7 cut(s)	202, 298, 351, 562, 628, 871, 972
BtsI	GCAGTG	1 cut(s)	236
BtsIMutI	CAGTG	4 cut(s)	236, 334, 617, 988
BveI	ACCTGC	2 cut(s)	680, 850
Cac8I	GCNNGC	2 cut(s)	167, 182
CaiI	CAGNNNCTG	1 cut(s)	680
CfoI	GCGC	2 cut(s)	64, 165
Cfr10I	RCCGGY	1 cut(s)	931
Cfr13I	GGNCC	1 cut(s)	1031
Csp6I	GTAC	2 cut(s)	391, 920
CviAII	CATG	4 cut(s)	76, 181, 490, 917
CviQI	GTAC	2 cut(s)	391, 920
DdeI	CTNAG	8 cut(s)	8, 90, 357, 419, 456, 774, 837, 996
DpnI	GATC	4 cut(s)	249, 444, 978, 1066
DpnII	GATC	4 cut(s)	247, 442, 976, 1064
DrdI	GACNNNNNNGTC	1 cut(s)	566
DseDI	GACNNNNNNGTC	1 cut(s)	566
EaeI	YGGCCR	1 cut(s)	1126
Eam1104I	CTCTTC	1 cut(s)	807
EarI	CTCTTC	1 cut(s)	807
Ecl136II	GAGCTC	1 cut(s)	351
Eco130I	CCWWGG	3 cut(s)	75, 489, 1162
Eco24I	GRGCYC	1 cut(s)	353
Eco31I	GGTCTC	2 cut(s)	574, 875
Eco47I	GGWCC	1 cut(s)	1031
Eco53kI	GAGCTC	1 cut(s)	351
Eco57I	CTGAAG	1 cut(s)	633
Eco91I	GGTNACC	1 cut(s)	768
EcoICRI	GAGCTC	1 cut(s)	351
EcoO109I	RGGNCCY	1 cut(s)	1031
EcoO65I	GGTNACC	1 cut(s)	768
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	1042
EcoT14I	CCWWGG	3 cut(s)	75, 489, 1162
EcoT38I	GRGCYC	1 cut(s)	353
ErhI	CCWWGG	3 cut(s)	75, 489, 1162
FaeI	CATG	4 cut(s)	79, 184, 493, 920
FalI	AAGNNNNNCTT	2 cut(s)	1131, 1163
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	4 cut(s)	75, 180, 489, 916
FauNDI	CATATG	1 cut(s)	962
Fnu4HI	GCNGC	5 cut(s)	65, 185, 734, 787, 945
FokI	GGATG	7 cut(s)	209, 305, 358, 569, 635, 878, 979
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	5 cut(s)	65, 185, 734, 787, 945
FspBI	CTAG	1 cut(s)	974
GlaI	GCGC	2 cut(s)	63, 164
GluI	GCNGC	5 cut(s)	65, 185, 734, 787, 945
GsuI	CTGGAG	1 cut(s)	1095
HaeIII	GGCC	2 cut(s)	253, 1128
HapII	CCGG	1 cut(s)	932
HhaI	GCGC	2 cut(s)	64, 165
Hin1II	CATG	4 cut(s)	79, 184, 493, 920
Hin6I	GCGC	2 cut(s)	62, 163
HinP1I	GCGC	2 cut(s)	62, 163
HincII	GTYRAC	1 cut(s)	695
HindII	GTYRAC	1 cut(s)	695
HinfI	GANTC	6 cut(s)	404, 417, 527, 598, 797, 1082
HpaII	CCGG	1 cut(s)	932
HphI	GGTGA	5 cut(s)	762, 773, 865, 1058, 1091
Hpy166II	GTNNAC	1 cut(s)	695
Hpy188I	TCNGA	7 cut(s)	52, 93, 103, 422, 613, 1087, 1123
Hpy188III	TCNNGA	2 cut(s)	290, 414
Hpy8I	GTNNAC	1 cut(s)	695
HpyAV	CCTTC	4 cut(s)	208, 274, 489, 1049
HpyCH4III	ACNGT	3 cut(s)	329, 983, 1014
HpyCH4V	TGCA	7 cut(s)	180, 200, 229, 663, 859, 901, 986
HpyF10VI	GCNNNNNNNGC	3 cut(s)	623, 730, 941
HpyF3I	CTNAG	8 cut(s)	8, 90, 357, 419, 456, 774, 837, 996
Hsp92II	CATG	4 cut(s)	79, 184, 493, 920
HspAI	GCGC	2 cut(s)	62, 163
Kzo9I	GATC	4 cut(s)	247, 442, 976, 1064
LmnI	GCTCC	2 cut(s)	4, 366
Lsp1109I	GCAGC	4 cut(s)	76, 171, 745, 931
LweI	GCATC	5 cut(s)	100, 187, 613, 752, 957
MaeI	CTAG	1 cut(s)	974
MaeIII	GTNAC	2 cut(s)	329, 768
MalI	GATC	4 cut(s)	249, 444, 978, 1066
MboI	GATC	4 cut(s)	247, 442, 976, 1064
MfeI	CAATTG	2 cut(s)	201, 465
MhlI	GDGCHC	2 cut(s)	353, 371
MlsI	TGGCCA	1 cut(s)	1128
MluCI	AATT	4 cut(s)	201, 266, 465, 701
MluNI	TGGCCA	1 cut(s)	1128
MlyI	GAGTC	5 cut(s)	398, 411, 536, 592, 1091
MmeI	TCCRAC	2 cut(s)	1065, 1115
Mox20I	TGGCCA	1 cut(s)	1128
MroXI	GAANNNNTTC	1 cut(s)	801
MscI	TGGCCA	1 cut(s)	1128
MseI	TTAA	3 cut(s)	191, 552, 645
MslI	CAYNNNNRTG	1 cut(s)	965
Msp20I	TGGCCA	1 cut(s)	1128
MspCI	CTTAAG	1 cut(s)	551
MspI	CCGG	1 cut(s)	932
MspR9I	CCNGG	1 cut(s)	1044
MunI	CAATTG	2 cut(s)	201, 465
MvaI	CCWGG	1 cut(s)	1044
MvnI	CGCG	2 cut(s)	62, 165
MwoI	GCNNNNNNNGC	3 cut(s)	623, 730, 941
NcoI	CCATGG	2 cut(s)	75, 489
NdeI	CATATG	1 cut(s)	962
NdeII	GATC	4 cut(s)	247, 442, 976, 1064
NlaIII	CATG	4 cut(s)	79, 184, 493, 920
NlaIV	GGNNCC	1 cut(s)	453
NmuCI	GTSAC	2 cut(s)	329, 768
NspI	RCATGY	1 cut(s)	184
PaeI	GCATGC	1 cut(s)	184
PaqCI	CACCTGC	1 cut(s)	850
PdmI	GAANNNNTTC	1 cut(s)	801
PfeI	GAWTC	1 cut(s)	797
PkrI	GCNGC	5 cut(s)	66, 186, 735, 788, 946
PleI	GAGTC	5 cut(s)	398, 411, 535, 592, 1090
PpsI	GAGTC	5 cut(s)	398, 411, 535, 592, 1090
PpuMI	RGGWCCY	1 cut(s)	1031
PshAI	GACNNNNGTC	1 cut(s)	21
Psp124BI	GAGCTC	1 cut(s)	353
Psp5II	RGGWCCY	1 cut(s)	1031
Psp6I	CCWGG	1 cut(s)	1042
PspEI	GGTNACC	1 cut(s)	768
PspGI	CCWGG	1 cut(s)	1042
PspN4I	GGNNCC	1 cut(s)	453
PspPI	GGNCC	1 cut(s)	1031
PspPPI	RGGWCCY	1 cut(s)	1031
PstI	CTGCAG	1 cut(s)	665
PstNI	CAGNNNCTG	1 cut(s)	680
RsaI	GTAC	2 cut(s)	392, 921
RsaNI	GTAC	2 cut(s)	391, 920
RseI	CAYNNNNRTG	1 cut(s)	965
SacI	GAGCTC	1 cut(s)	353
SaqAI	TTAA	3 cut(s)	191, 552, 645
SatI	GCNGC	5 cut(s)	65, 185, 734, 787, 945
Sau3AI	GATC	4 cut(s)	247, 442, 976, 1064
Sau96I	GGNCC	1 cut(s)	1031
SchI	GAGTC	5 cut(s)	398, 411, 536, 592, 1091
ScrFI	CCNGG	1 cut(s)	1044
SduI	GDGCHC	2 cut(s)	353, 371
SfaNI	GCATC	5 cut(s)	100, 187, 613, 752, 957
SfcI	CTRYAG	1 cut(s)	661
SinI	GGWCC	1 cut(s)	1031
SmiMI	CAYNNNNRTG	1 cut(s)	965
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
SphI	GCATGC	1 cut(s)	184
Sse9I	AATT	4 cut(s)	201, 266, 465, 701
SsiI	CCGC	2 cut(s)	784, 787
SspI	AATATT	1 cut(s)	382
SspMI	CTAG	1 cut(s)	974
SstI	GAGCTC	1 cut(s)	353
StyD4I	CCNGG	1 cut(s)	1042
StyI	CCWWGG	3 cut(s)	75, 489, 1162
TaaI	ACNGT	3 cut(s)	329, 983, 1014
TaqI	TCGA	2 cut(s)	129, 1063
TaqII	GACCGA	1 cut(s)	435
TasI	AATT	4 cut(s)	201, 266, 465, 701
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	1 cut(s)	789
TfiI	GAWTC	1 cut(s)	797
Tru1I	TTAA	3 cut(s)	191, 552, 645
Tru9I	TTAA	3 cut(s)	191, 552, 645
TscAI	CASTG	4 cut(s)	236, 334, 624, 988
TseFI	GTSAC	2 cut(s)	329, 768
TseI	GCWGC	4 cut(s)	64, 184, 733, 944
Tsp45I	GTSAC	2 cut(s)	329, 768
TspDTI	ATGAA	4 cut(s)	150, 259, 897, 905
TspRI	CASTG	4 cut(s)	236, 334, 624, 988
Vha464I	CTTAAG	1 cut(s)	551
VpaK11BI	GGWCC	1 cut(s)	1031
XapI	RAATTY	1 cut(s)	266
XceI	RCATGY	1 cut(s)	184
XmnI	GAANNNNTTC	1 cut(s)	801
XspI	CTAG	1 cut(s)	974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.