pycom15g24200
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0006004
Physical Location & Seq
Forward (+)
18381982 .. 18383744
1763 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g24200.3

Sequence Viewer

Length: 1200 bp
ATGGACCTGCTGAGCTTGGACTCCAGTCCTCTGTTCGTCCCGAAAACAATCACCGACTTTCTCGCTCAGCTCTTCGCCATTAAAGACGGCTCTCAGAGGTCTTCAGAGCTCGATGGGTACGTGAAGAGACTGGAAGACGAACTCAGAAAGATTGAAGTTTTCAAGCGGGAGCTTCCTCTCTGCATGCTTCTCCTGAAGGATGTGATTGAGCGGTTGAAGGAGGAAGGAATGCGGTGGAGGCGAATGGAAGAGCGGCCGGTGATGGCGGAGTTCATACCATTGAAGTGTAATTCTGAGGAGGACGGAGGGGCAGTTTCGGGAAAGGAAAATATTGACAAGAAGAACTGGATGAGCTCTGCGCAGCTATGGAGCACAAGCATCAATGTTTTTGATTACACCAAACACGACTCTGAACTTAAACTGGGGAATGAGGAAGATGATCGGTCGGCGGCGGAGAACCCAATTGAGCTGAGTAATAAGAAAGGCGTGGGAGGGGCATTACTGGCATTCAAGGGTCAGAATGAGTTGTCTGGTTTTGCAAACCCATGTTTGAAGGGAGACAAGGAGGTTACCGTGGTTCCAAACCTTTGTCTTATGACTCCATTGATGTCTGAAACACTGGCTGGTTCTGCAAATGCAAACTCTAAGACCAACCATGGCTGCAGAGGTGGCGGTTCGGGTTCTGGTATGGCAGGACAATTGAAATTACAGAACAAACCCCAACAGCAGCCACAGCAGCAGCAGCAGCAACCCTTAAGGAAACAAAGGCGGTGCTGGTCGGCGGAGCTCCACCGCCGCTTTGTTGATGCCCTTCAGCAGCTTGGAGGAACACAAGTAGCCACTCCTAAGCAGATAAGAGAACTTATGCAGGTGGAGGGTCTCACCAATGATGAAGTTAAAAGCCACTTGCAGAAATACCGCCTTCACATCCGAAAGCTCCCGCCTTCTTCAGCTGCTGGCCAAGGCAATGACTTACTCGTGCCCTTGGATCACAGCGGAGAGCATGCTAAGGCAAACAACGTACAGTCTGGTTCTCCACAGGGTCCTCTCCTCGCAGGAGGGTTTGCCAAAGGTCGATCCACAACTGGAGGCAAGTCGGGTGACAGCAGGGAAGGTGAAGAGGATGAGAAATCGGATGGACAGAGTTGGACAAGTGGGAATCACAACCACCACCACCACCAAGGAGCTGGAGATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

400

Amino Acids

43.89

Weight (kDa)

6.65

Isoelectric Point (pI)

56.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 859
Acc16I TGCGCA 1 cut(s) 360
Acc36I ACCTGC 2 cut(s) 15, 859
AccBSI CCGCTC 2 cut(s) 211, 253
AclWI GGATC 2 cut(s) 996, 1071
AcoI YGGCCR 2 cut(s) 254, 958
AcuI CTGAAG 4 cut(s) 87, 215, 797, 933
AfaI GTAC 2 cut(s) 119, 1023
AflII CTTAAG 1 cut(s) 754
AgsI TTSAA 7 cut(s) 155, 163, 217, 283, 511, 553, 703
Alw21I GWGCWC 4 cut(s) 111, 356, 374, 789
Alw26I GTCTC 3 cut(s) 121, 552, 884
AlwI GGATC 2 cut(s) 996, 1071
AlwNI CAGNNNCTG 1 cut(s) 956
AoxI GGCC 2 cut(s) 254, 958
ApeKI GCWGC 9 cut(s) 361, 660, 727, 736, 739, 742, 745, 817, 953
AspLEI GCGC 1 cut(s) 361
AspS9I GGNCC 2 cut(s) 4, 1043
AsuHPI GGTGA 5 cut(s) 43, 271, 874, 1112, 1127
AvaII GGWCC 2 cut(s) 4, 1043
BaeGI GKGCMC 1 cut(s) 984
BalI TGGCCA 1 cut(s) 960
BanII GRGCYC 3 cut(s) 111, 356, 789
BauI CACGAG 1 cut(s) 977
BbsI GAAGAC 2 cut(s) 93, 141
Bbv12I GWGCWC 4 cut(s) 111, 356, 374, 789
BbvI GCAGC 9 cut(s) 373, 647, 739, 748, 751, 754, 757, 829, 940
BccI CCATC 3 cut(s) 107, 256, 1130
BceAI ACGGC 1 cut(s) 103
BcoDI GTCTC 3 cut(s) 121, 552, 884
BfmI CTRYAG 1 cut(s) 661
BfrI CTTAAG 1 cut(s) 754
BfuAI ACCTGC 2 cut(s) 15, 859
BlpI GCTNAGC 2 cut(s) 11, 66
Bme18I GGWCC 2 cut(s) 4, 1043
BmgT120I GGNCC 2 cut(s) 4, 1043
BmiI GGNNCC 2 cut(s) 579, 1044
BmrI ACTGGG 1 cut(s) 431
BmsI GCATC 2 cut(s) 387, 796
BmuI ACTGGG 1 cut(s) 431
BoxI GACNNNNGTC 1 cut(s) 24
BpiI GAAGAC 2 cut(s) 93, 141
BpmI CTGGAG 2 cut(s) 7, 1107
Bpu10I CCTNAGC 2 cut(s) 846, 1008
Bpu1102I GCTNAGC 2 cut(s) 11, 66
BsaAI YACGTR 1 cut(s) 121
BsaI GGTCTC 1 cut(s) 884
BsaJI CCNNGG 5 cut(s) 573, 655, 961, 984, 1180
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bse118I RCCGGY 1 cut(s) 256
Bse1I ACTGG 7 cut(s) 24, 135, 350, 426, 507, 624, 1090
Bse3DI GCAATG 1 cut(s) 973
BseDI CCNNGG 5 cut(s) 573, 655, 961, 984, 1180
BseGI GGATG 5 cut(s) 205, 354, 927, 1129, 1141
BseMI GCAATG 1 cut(s) 973
BseMII CTCAG 5 cut(s) 80, 107, 157, 285, 461
BseNI ACTGG 7 cut(s) 24, 135, 350, 426, 507, 624, 1090
BseRI GAGGAG 2 cut(s) 311, 1040
BseSI GKGCMC 1 cut(s) 984
BseX3I CGGCCG 1 cut(s) 254
BseXI GCAGC 9 cut(s) 373, 647, 739, 748, 751, 754, 757, 829, 940
Bsh1285I CGRYCG 2 cut(s) 257, 446
BshFI GGCC 2 cut(s) 256, 960
BsiEI CGRYCG 2 cut(s) 257, 446
BsiHKAI GWGCWC 4 cut(s) 111, 356, 374, 789
BsiSI CCGG 1 cut(s) 257
BslFI GGGAC 1 cut(s) 23
BsmAI GTCTC 3 cut(s) 121, 552, 884
BsmFI GGGAC 1 cut(s) 23
BsmI GAATGC 2 cut(s) 234, 506
BsnI GGCC 2 cut(s) 256, 960
Bso31I GGTCTC 1 cut(s) 884
Bsp1286I GDGCHC 5 cut(s) 111, 356, 374, 789, 984
Bsp143I GATC 3 cut(s) 439, 988, 1076
Bsp1720I GCTNAGC 2 cut(s) 11, 66
Bsp19I CCATGG 1 cut(s) 655
BspANI GGCC 2 cut(s) 256, 960
BspCNI CTCAG 5 cut(s) 79, 106, 156, 286, 462
BspLI GGNNCC 2 cut(s) 579, 1044
BspMAI CTGCAG 1 cut(s) 665
BspMI ACCTGC 2 cut(s) 15, 859
BspPI GGATC 2 cut(s) 996, 1071
BspQI GCTCTTC 2 cut(s) 77, 243
BspTI CTTAAG 1 cut(s) 754
BspTNI GGTCTC 1 cut(s) 884
BsrBI CCGCTC 2 cut(s) 211, 253
BsrDI GCAATG 1 cut(s) 973
BsrFI RCCGGY 1 cut(s) 256
BsrI ACTGG 7 cut(s) 24, 135, 350, 426, 507, 624, 1090
BssAI RCCGGY 1 cut(s) 256
BssECI CCNNGG 5 cut(s) 573, 655, 961, 984, 1180
BssMI GATC 3 cut(s) 439, 988, 1076
BssSI CACGAG 1 cut(s) 977
BssT1I CCWWGG 4 cut(s) 655, 961, 984, 1180
Bst2BI CACGAG 1 cut(s) 977
Bst4CI ACNGT 2 cut(s) 574, 1026
Bst6I CTCTTC 4 cut(s) 77, 119, 243, 1113
BstAFI CTTAAG 1 cut(s) 754
BstBAI YACGTR 1 cut(s) 121
BstC8I GCNNGC 3 cut(s) 185, 958, 1005
BstDEI CTNAG 9 cut(s) 11, 66, 93, 143, 294, 470, 645, 846, 1008
BstDSI CCRYGG 2 cut(s) 573, 655
BstEII GGTNACC 1 cut(s) 568
BstF5I GGATG 5 cut(s) 205, 354, 927, 1129, 1141
BstHHI GCGC 1 cut(s) 361
BstKTI GATC 3 cut(s) 442, 991, 1079
BstMAI GTCTC 3 cut(s) 121, 552, 884
BstMBI GATC 3 cut(s) 439, 988, 1076
BstMCI CGRYCG 2 cut(s) 257, 446
BstMWI GCNNNNNNNGC 8 cut(s) 238, 503, 629, 669, 733, 736, 742, 745
BstNSI RCATGY 2 cut(s) 187, 1007
BstPAI GACNNNNGTC 1 cut(s) 24
BstPI GGTNACC 1 cut(s) 568
BstSFI CTRYAG 1 cut(s) 661
BstSLI GKGCMC 1 cut(s) 984
BstV1I GCAGC 9 cut(s) 373, 647, 739, 748, 751, 754, 757, 829, 940
BstV2I GAAGAC 2 cut(s) 93, 141
BstXI CCANNNNNNTGG 1 cut(s) 1187
BstZI CGGCCG 1 cut(s) 254
BsuRI GGCC 2 cut(s) 256, 960
BtgI CCRYGG 2 cut(s) 573, 655
BtsCI GGATG 5 cut(s) 205, 354, 927, 1129, 1141
BtsIMutI CAGTG 1 cut(s) 617
BveI ACCTGC 2 cut(s) 15, 859
Cac8I GCNNGC 3 cut(s) 185, 958, 1005
CaiI CAGNNNCTG 1 cut(s) 956
CfoI GCGC 1 cut(s) 361
Cfr10I RCCGGY 1 cut(s) 256
Cfr13I GGNCC 2 cut(s) 4, 1043
Csp6I GTAC 2 cut(s) 118, 1022
CviAII CATG 4 cut(s) 184, 546, 656, 1004
CviQI GTAC 2 cut(s) 118, 1022
DdeI CTNAG 9 cut(s) 11, 66, 93, 143, 294, 470, 645, 846, 1008
DpnI GATC 3 cut(s) 441, 990, 1078
DpnII GATC 3 cut(s) 439, 988, 1076
EaeI YGGCCR 2 cut(s) 254, 958
EagI CGGCCG 1 cut(s) 254
Eam1104I CTCTTC 4 cut(s) 77, 119, 243, 1113
EarI CTCTTC 4 cut(s) 77, 119, 243, 1113
EciI GGCGGA 3 cut(s) 281, 467, 797
Ecl136II GAGCTC 3 cut(s) 109, 354, 787
EclXI CGGCCG 1 cut(s) 254
Eco130I CCWWGG 4 cut(s) 655, 961, 984, 1180
Eco24I GRGCYC 3 cut(s) 111, 356, 789
Eco31I GGTCTC 1 cut(s) 884
Eco47I GGWCC 2 cut(s) 4, 1043
Eco52I CGGCCG 1 cut(s) 254
Eco53kI GAGCTC 3 cut(s) 109, 354, 787
Eco57I CTGAAG 4 cut(s) 87, 215, 797, 933
Eco91I GGTNACC 1 cut(s) 568
EcoICRI GAGCTC 3 cut(s) 109, 354, 787
EcoO109I RGGNCCY 1 cut(s) 1043
EcoO65I GGTNACC 1 cut(s) 568
EcoT14I CCWWGG 4 cut(s) 655, 961, 984, 1180
EcoT38I GRGCYC 3 cut(s) 111, 356, 789
ErhI CCWWGG 4 cut(s) 655, 961, 984, 1180
FaeI CATG 4 cut(s) 187, 549, 659, 1007
FaqI GGGAC 1 cut(s) 23
FatI CATG 4 cut(s) 183, 545, 655, 1003
FauI CCCGC 2 cut(s) 159, 948
FokI GGATG 5 cut(s) 212, 361, 914, 1136, 1148
FriOI GRGCYC 3 cut(s) 111, 356, 789
FspI TGCGCA 1 cut(s) 360
GlaI GCGC 1 cut(s) 360
GsuI CTGGAG 2 cut(s) 7, 1107
HaeIII GGCC 2 cut(s) 256, 960
HapII CCGG 1 cut(s) 257
HhaI GCGC 1 cut(s) 361
Hin1II CATG 4 cut(s) 187, 549, 659, 1007
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HinfI GANTC 4 cut(s) 20, 407, 598, 1159
HpaII CCGG 1 cut(s) 257
HphI GGTGA 5 cut(s) 43, 271, 874, 1112, 1127
Hpy188I TCNGA 9 cut(s) 96, 106, 146, 295, 412, 519, 613, 932, 1135
Hpy188III TCNNGA 3 cut(s) 40, 193, 318
HpyAV CCTTC 8 cut(s) 190, 211, 218, 547, 821, 932, 954, 1106
HpyCH4III ACNGT 2 cut(s) 574, 1026
HpyCH4IV ACGT 2 cut(s) 120, 1020
HpyCH4V TGCA 7 cut(s) 183, 539, 632, 638, 663, 868, 910
HpyF10VI GCNNNNNNNGC 8 cut(s) 238, 503, 629, 669, 733, 736, 742, 745
HpyF3I CTNAG 9 cut(s) 11, 66, 93, 143, 294, 470, 645, 846, 1008
HpySE526I ACGT 2 cut(s) 120, 1020
Hsp92II CATG 4 cut(s) 187, 549, 659, 1007
HspAI GCGC 1 cut(s) 359
Kzo9I GATC 3 cut(s) 439, 988, 1076
LguI GCTCTTC 2 cut(s) 77, 243
LmnI GCTCC 6 cut(s) 169, 369, 784, 792, 942, 1184
Lsp1109I GCAGC 9 cut(s) 373, 647, 739, 748, 751, 754, 757, 829, 940
LweI GCATC 2 cut(s) 387, 796
MaeII ACGT 2 cut(s) 120, 1020
MaeIII GTNAC 2 cut(s) 568, 1100
MalI GATC 3 cut(s) 441, 990, 1078
MbiI CCGCTC 2 cut(s) 211, 253
MboI GATC 3 cut(s) 439, 988, 1076
MboII GAAGA 9 cut(s) 64, 93, 136, 146, 260, 352, 446, 939, 1130
MfeI CAATTG 2 cut(s) 462, 698
MhlI GDGCHC 5 cut(s) 111, 356, 374, 789, 984
MlsI TGGCCA 1 cut(s) 960
MluCI AATT 4 cut(s) 289, 462, 698, 704
MluNI TGGCCA 1 cut(s) 960
MlyI GAGTC 3 cut(s) 14, 401, 592
MmeI TCCRAC 1 cut(s) 1127
Mox20I TGGCCA 1 cut(s) 960
MscI TGGCCA 1 cut(s) 960
MseI TTAA 4 cut(s) 81, 417, 755, 897
MslI CAYNNNNRTG 1 cut(s) 283
Msp20I TGGCCA 1 cut(s) 960
MspA1I CMGCKG 2 cut(s) 953, 996
MspCI CTTAAG 1 cut(s) 754
MspI CCGG 1 cut(s) 257
MunI CAATTG 2 cut(s) 462, 698
Mva1269I GAATGC 2 cut(s) 234, 506
MwoI GCNNNNNNNGC 8 cut(s) 238, 503, 629, 669, 733, 736, 742, 745
NcoI CCATGG 1 cut(s) 655
NdeII GATC 3 cut(s) 439, 988, 1076
NlaIII CATG 4 cut(s) 187, 549, 659, 1007
NlaIV GGNNCC 2 cut(s) 579, 1044
NmuCI GTSAC 1 cut(s) 1100
NsbI TGCGCA 1 cut(s) 360
NspI RCATGY 2 cut(s) 187, 1007
PaeI GCATGC 2 cut(s) 187, 1007
PaqCI CACCTGC 1 cut(s) 859
PciSI GCTCTTC 2 cut(s) 77, 243
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PctI GAATGC 2 cut(s) 234, 506
PfeI GAWTC 1 cut(s) 1159
PleI GAGTC 3 cut(s) 14, 401, 592
PpsI GAGTC 3 cut(s) 14, 401, 592
Ppu21I YACGTR 1 cut(s) 121
PpuMI RGGWCCY 1 cut(s) 1043
PshAI GACNNNNGTC 1 cut(s) 24
Psp124BI GAGCTC 3 cut(s) 111, 356, 789
Psp5II RGGWCCY 1 cut(s) 1043
PspEI GGTNACC 1 cut(s) 568
PspN4I GGNNCC 2 cut(s) 579, 1044
PspPI GGNCC 2 cut(s) 4, 1043
PspPPI RGGWCCY 1 cut(s) 1043
PstI CTGCAG 1 cut(s) 665
PstNI CAGNNNCTG 1 cut(s) 956
PvuII CAGCTG 1 cut(s) 953
RsaI GTAC 2 cut(s) 119, 1023
RsaNI GTAC 2 cut(s) 118, 1022
RseI CAYNNNNRTG 1 cut(s) 283
SacI GAGCTC 3 cut(s) 111, 356, 789
SapI GCTCTTC 2 cut(s) 77, 243
SaqAI TTAA 4 cut(s) 81, 417, 755, 897
Sau3AI GATC 3 cut(s) 439, 988, 1076
Sau96I GGNCC 2 cut(s) 4, 1043
SchI GAGTC 3 cut(s) 14, 401, 592
SduI GDGCHC 5 cut(s) 111, 356, 374, 789, 984
SfaNI GCATC 2 cut(s) 387, 796
SfcI CTRYAG 1 cut(s) 661
SinI GGWCC 2 cut(s) 4, 1043
SmiMI CAYNNNNRTG 1 cut(s) 283
SmlI CTYRAG 1 cut(s) 754
SmoI CTYRAG 1 cut(s) 754
SphI GCATGC 2 cut(s) 187, 1007
Sse9I AATT 4 cut(s) 289, 462, 698, 704
SspI AATATT 1 cut(s) 331
SstI GAGCTC 3 cut(s) 111, 356, 789
StyI CCWWGG 4 cut(s) 655, 961, 984, 1180
TaaI ACNGT 2 cut(s) 574, 1026
TaiI ACGT 2 cut(s) 123, 1023
TaqI TCGA 2 cut(s) 111, 1075
TaqII GACCGA 1 cut(s) 432
TasI AATT 4 cut(s) 289, 462, 698, 704
TauI GCSGC 3 cut(s) 256, 452, 798
TfiI GAWTC 1 cut(s) 1159
Tru1I TTAA 4 cut(s) 81, 417, 755, 897
Tru9I TTAA 4 cut(s) 81, 417, 755, 897
TscAI CASTG 1 cut(s) 624
TseFI GTSAC 1 cut(s) 1100
TseI GCWGC 9 cut(s) 361, 660, 727, 736, 739, 742, 745, 817, 953
Tsp45I GTSAC 1 cut(s) 1100
TspDTI ATGAA 2 cut(s) 262, 906
TspGWI ACGGA 1 cut(s) 318
TspRI CASTG 1 cut(s) 624
Vha464I CTTAAG 1 cut(s) 754
VpaK11BI GGWCC 2 cut(s) 4, 1043
XceI RCATGY 2 cut(s) 187, 1007
XcmI CCANNNNNNNNNTGG 1 cut(s) 1184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.