Rorug02G0121800
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006004
Physical Location & Seq
Reverse (-)
10500517 .. 10501620
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0121800.1

Sequence Viewer

Length: 1104 bp
ATGGGCGCCACCTTCACCGCAGCCCCAATGCCCGACCCGAATCCGAACGCCGCCTCAGTCTCCTGTTGGAGCAACATGGTGAAAAAGCAGCCGGGGCTAAATCCCCAAAACTCCGACTCCTCAATGGCCACCAGCAAAGTATTCGTCGAAAGCTGCAAGTCCTCTAAGGGCATAGCCGTGGCCGTCGTAGAGGCAAATGCTATAATTCAAGGCGGCGAGAGCCTCGGCCACTGTGCCGACAAGTTCGTCTCCGTCCCTGAAGTCATGGACGAGGTCCGTGACCCTATTTCCCGCCACCGCCACCGCCTCGCCGTCGTTCCGTTCCAAGTCCAGACCATGGAACCCTCCCCTGAATCCCTCAATAAAGTTATTAAGTTTGCGAGGGCTACTGGGGATTTACGGATACTGTCAGATGTGGATGTTAAGCTCATTGCTGTGACTTATACATTGGAGGCTCAGATACATGGCACTGAGCACCTCAGGGACTGTCCTCCGCCTGTGCATGCTATCCACAATTCGAAGATTCTTCCGTTGAAAGATATAAACATGAATGTTATCCATGATTCTGAGAGCCCTTCTGTTCATTCTGAGAATCAGGAGGGTGGTGAGGGGAGCCATAGGAGATATTTTCCAAAGAAGAAAGAGATAATAAAGATTGAAGGGGAGATGGTTTCTGACGGAATTGATGCGTTCCAAGGACAAGTTGATGATAATGCCGGTGATTGGATGCCTGTCGTCAGTTCGAGTACACATAGAAGGTTTTTGAGGAGAAAAGGTAAACGTGAGTCTTATGAGGCATCGGCTGATAATGATTCTCAGCAAGATGCTGAGGAAAACACAAGTGGTGACCTACTTGTGGATCAAACATCGGCTTCTAAATTTTACAGACCTGTGGAGGGTGAGATGACAGAGGAGAAGAATTGTGATGAAGATCTTTCCTCAATCCTCGAGCAAACAAGGCATGATGAAGATTCAATTAGGGTTCTTCAAAAAGGGAAGGAGCAGAATGGGGTTGAGGATAATGATTTCAAAGCAGGGAAAAGCACTTCTGATAACGGTGTGAATTTTTCTGTTGAAGGATATGAGGTTGAAGTGATAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

367

Amino Acids

40.39

Weight (kDa)

5.04

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIN_6 PF17146 62 - 150 3.2e-22 PIN domain of ribonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 5
AccB7I CCANNNNNTGG 1 cut(s) 337
AciI CCGC 7 cut(s) 18, 51, 213, 292, 298, 304, 494
AclWI GGATC 1 cut(s) 867
AcoI YGGCCR 3 cut(s) 126, 180, 226
AcsI RAATTY 2 cut(s) 878, 1063
AcuI CTGAAG 1 cut(s) 279
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 1 cut(s) 748
AfiI CCNNNNNNNGG 4 cut(s) 337, 723, 856, 896
AgsI TTSAA 8 cut(s) 209, 535, 659, 975, 989, 1030, 1076, 1091
AluBI AGCT 2 cut(s) 153, 427
AluI AGCT 2 cut(s) 153, 427
Alw21I GWGCWC 1 cut(s) 477
Alw26I GTCTC 2 cut(s) 64, 253
AlwI GGATC 1 cut(s) 867
AlwNI CAGNNNCTG 1 cut(s) 486
Ama87I CYCGRG 1 cut(s) 947
AoxI GGCC 3 cut(s) 126, 180, 226
ApeKI GCWGC 3 cut(s) 20, 88, 153
ApoI RAATTY 2 cut(s) 878, 1063
ArsI GACNNNNNNTTYG 2 cut(s) 129, 161
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 274
AsuC2I CCSGG 1 cut(s) 93
AsuHPI GGTGA 6 cut(s) 7, 91, 617, 731, 857, 911
AsuII TTCGAA 1 cut(s) 518
AvaI CYCGRG 1 cut(s) 947
AvaII GGWCC 1 cut(s) 274
AxyI CCTNAGG 1 cut(s) 479
BalI TGGCCA 1 cut(s) 128
BanI GGYRCC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 575
Bbv12I GWGCWC 1 cut(s) 477
BbvCI CCTCAGC 1 cut(s) 828
BbvI GCAGC 3 cut(s) 32, 100, 140
BccI CCATC 1 cut(s) 661
BceAI ACGGC 3 cut(s) 161, 167, 296
BcgI CGANNNNNNTGC 2 cut(s) 124, 158
BciVI GTATCC 1 cut(s) 396
BcnI CCSGG 1 cut(s) 93
BcoDI GTCTC 2 cut(s) 64, 253
BfoI RGCGCY 1 cut(s) 9
BfuI GTATCC 1 cut(s) 396
BglII AGATCT 1 cut(s) 931
BisI GCNGC 5 cut(s) 21, 51, 89, 154, 214
BlsI GCNGC 5 cut(s) 22, 52, 90, 155, 215
Bme1390I CCNGG 1 cut(s) 93
Bme18I GGWCC 1 cut(s) 274
BmeT110I CYCGRG 1 cut(s) 947
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 3 cut(s) 7, 342, 614
BmrFI CCNGG 1 cut(s) 93
BmrI ACTGGG 1 cut(s) 399
BmsI GCATC 4 cut(s) 676, 717, 806, 814
BmuI ACTGGG 1 cut(s) 399
Bpu10I CCTNAGC 1 cut(s) 828
Bpu14I TTCGAA 1 cut(s) 518
BpuMI CCSGG 1 cut(s) 93
BsaBI GATNNNNATC 1 cut(s) 930
BsaHI GRCGYC 1 cut(s) 6
BsaJI CCNNGG 5 cut(s) 92, 177, 223, 336, 694
BsaXI ACNNNNNCTCC 4 cut(s) 101, 131, 760, 790
Bsc4I CCNNNNNNNGG 4 cut(s) 337, 723, 856, 896
Bse118I RCCGGY 1 cut(s) 716
Bse1I ACTGG 1 cut(s) 394
Bse21I CCTNAGG 1 cut(s) 479
Bse3DI GCAATG 1 cut(s) 429
Bse8I GATNNNNATC 1 cut(s) 930
BseDI CCNNGG 5 cut(s) 92, 177, 223, 336, 694
BseGI GGATG 2 cut(s) 424, 732
BseJI GATNNNNATC 1 cut(s) 930
BseLI CCNNNNNNNGG 4 cut(s) 337, 723, 856, 896
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 8 cut(s) 69, 462, 470, 493, 558, 579, 819, 830
BseNI ACTGG 1 cut(s) 394
BseRI GAGGAG 3 cut(s) 109, 781, 926
BseXI GCAGC 3 cut(s) 32, 100, 140
BshFI GGCC 3 cut(s) 128, 182, 228
BshNI GGYRCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 477
BsiHKCI CYCGRG 1 cut(s) 947
BsiSI CCGG 2 cut(s) 92, 717
BslFI GGGAC 2 cut(s) 239, 497
BslI CCNNNNNNNGG 4 cut(s) 337, 723, 856, 896
BsmAI GTCTC 2 cut(s) 64, 253
BsmBI CGTCTC 1 cut(s) 253
BsmFI GGGAC 2 cut(s) 239, 497
BsnI GGCC 3 cut(s) 128, 182, 228
BsoBI CYCGRG 1 cut(s) 947
Bsp119I TTCGAA 1 cut(s) 518
Bsp1286I GDGCHC 2 cut(s) 477, 575
Bsp143I GATC 2 cut(s) 859, 931
Bsp19I CCATGG 1 cut(s) 336
BspACI CCGC 7 cut(s) 18, 51, 213, 292, 298, 304, 494
BspANI GGCC 3 cut(s) 128, 182, 228
BspCNI CTCAG 8 cut(s) 68, 463, 469, 492, 559, 580, 820, 829
BspLI GGNNCC 3 cut(s) 7, 342, 614
BspPI GGATC 1 cut(s) 867
BspT104I TTCGAA 1 cut(s) 518
BspT107I GGYRCC 1 cut(s) 5
BsrDI GCAATG 1 cut(s) 429
BsrFI RCCGGY 1 cut(s) 716
BsrI ACTGG 1 cut(s) 394
BssAI RCCGGY 1 cut(s) 716
BssECI CCNNGG 5 cut(s) 92, 177, 223, 336, 694
BssMI GATC 2 cut(s) 859, 931
BssNI GRCGYC 1 cut(s) 6
BssT1I CCWWGG 2 cut(s) 336, 694
Bst4CI ACNGT 4 cut(s) 233, 408, 488, 1058
BstACI GRCGYC 1 cut(s) 6
BstBI TTCGAA 1 cut(s) 518
BstC8I GCNNGC 1 cut(s) 504
BstDEI CTNAG 9 cut(s) 55, 165, 456, 471, 479, 567, 588, 816, 828
BstDSI CCRYGG 2 cut(s) 177, 336
BstEII GGTNACC 1 cut(s) 845
BstF5I GGATG 2 cut(s) 424, 732
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 2 cut(s) 862, 934
BstMAI GTCTC 2 cut(s) 64, 253
BstMBI GATC 2 cut(s) 859, 931
BstMWI GCNNNNNNNGC 3 cut(s) 94, 219, 958
BstNSI RCATGY 1 cut(s) 506
BstPI GGTNACC 1 cut(s) 845
BstSCI CCNGG 1 cut(s) 91
BstV1I GCAGC 3 cut(s) 32, 100, 140
BstX2I RGATCY 1 cut(s) 931
BstYI RGATCY 1 cut(s) 931
Bsu36I CCTNAGG 1 cut(s) 479
BsuI GTATCC 1 cut(s) 396
BsuRI GGCC 3 cut(s) 128, 182, 228
BtgI CCRYGG 2 cut(s) 177, 336
BtsCI GGATG 2 cut(s) 424, 732
BtsIMutI CAGTG 2 cut(s) 229, 468
Cac8I GCNNGC 1 cut(s) 504
CaiI CAGNNNCTG 1 cut(s) 486
CfoI GCGC 1 cut(s) 8
Cfr10I RCCGGY 1 cut(s) 716
Cfr13I GGNCC 1 cut(s) 274
Csp6I GTAC 1 cut(s) 747
CviAII CATG 8 cut(s) 76, 265, 337, 464, 503, 547, 560, 962
CviQI GTAC 1 cut(s) 747
DdeI CTNAG 9 cut(s) 55, 165, 456, 471, 479, 567, 588, 816, 828
DinI GGCGCC 1 cut(s) 7
DpnI GATC 2 cut(s) 861, 933
DpnII GATC 2 cut(s) 859, 931
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 3 cut(s) 126, 180, 226
EciI GGCGGA 1 cut(s) 483
Eco130I CCWWGG 2 cut(s) 336, 694
Eco24I GRGCYC 1 cut(s) 575
Eco47I GGWCC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 279
Eco81I CCTNAGG 1 cut(s) 479
Eco88I CYCGRG 1 cut(s) 947
Eco91I GGTNACC 1 cut(s) 845
EcoO65I GGTNACC 1 cut(s) 845
EcoT14I CCWWGG 2 cut(s) 336, 694
EcoT38I GRGCYC 1 cut(s) 575
EgeI GGCGCC 1 cut(s) 7
EheI GGCGCC 1 cut(s) 7
ErhI CCWWGG 2 cut(s) 336, 694
Esp3I CGTCTC 1 cut(s) 253
FaeI CATG 8 cut(s) 79, 268, 340, 467, 506, 550, 563, 965
FaqI GGGAC 2 cut(s) 239, 497
FatI CATG 8 cut(s) 75, 264, 336, 463, 502, 546, 559, 961
FauI CCCGC 1 cut(s) 299
Fnu4HI GCNGC 5 cut(s) 21, 51, 89, 154, 214
FokI GGATG 2 cut(s) 431, 739
FriOI GRGCYC 1 cut(s) 575
Fsp4HI GCNGC 5 cut(s) 21, 51, 89, 154, 214
GlaI GCGC 1 cut(s) 7
GluI GCNGC 5 cut(s) 21, 51, 89, 154, 214
HaeII RGCGCY 1 cut(s) 9
HaeIII GGCC 3 cut(s) 128, 182, 228
HapII CCGG 2 cut(s) 92, 717
HhaI GCGC 1 cut(s) 8
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 8 cut(s) 79, 268, 340, 467, 506, 550, 563, 965
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HinfI GANTC 9 cut(s) 40, 116, 353, 523, 563, 592, 785, 812, 971
HpaII CCGG 2 cut(s) 92, 717
HphI GGTGA 6 cut(s) 7, 91, 617, 731, 857, 911
Hpy166II GTNNAC 2 cut(s) 749, 779
Hpy188I TCNGA 8 cut(s) 45, 115, 412, 459, 568, 589, 676, 1051
Hpy188III TCNNGA 2 cut(s) 331, 596
Hpy8I GTNNAC 2 cut(s) 749, 779
Hpy99I CGWCG 3 cut(s) 149, 188, 317
HpyAV CCTTC 6 cut(s) 22, 585, 653, 750, 991, 1070
HpyCH4III ACNGT 4 cut(s) 233, 408, 488, 1058
HpyCH4IV ACGT 1 cut(s) 781
HpyCH4V TGCA 2 cut(s) 156, 502
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 219, 958
HpyF3I CTNAG 9 cut(s) 55, 165, 456, 471, 479, 567, 588, 816, 828
HpySE526I ACGT 1 cut(s) 781
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 8 cut(s) 79, 268, 340, 467, 506, 550, 563, 965
HspAI GCGC 1 cut(s) 6
KasI GGCGCC 1 cut(s) 5
Kzo9I GATC 2 cut(s) 859, 931
LmnI GCTCC 3 cut(s) 69, 612, 1000
Lsp1109I GCAGC 3 cut(s) 32, 100, 140
LweI GCATC 4 cut(s) 676, 717, 806, 814
MaeII ACGT 1 cut(s) 781
MaeIII GTNAC 3 cut(s) 278, 436, 845
MalI GATC 2 cut(s) 861, 933
MboI GATC 2 cut(s) 859, 931
MboII GAAGA 7 cut(s) 518, 532, 649, 928, 941, 977, 980
MflI RGATCY 1 cut(s) 931
MhlI GDGCHC 2 cut(s) 477, 575
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 8 cut(s) 204, 514, 681, 878, 919, 975, 1063, 1099
MluNI TGGCCA 1 cut(s) 128
Mly113I GGCGCC 1 cut(s) 6
MlyI GAGTC 2 cut(s) 110, 794
MmeI TCCRAC 2 cut(s) 47, 138
Mox20I TGGCCA 1 cut(s) 128
MscI TGGCCA 1 cut(s) 128
MseI TTAA 3 cut(s) 372, 423, 1102
MslI CAYNNNNRTG 2 cut(s) 176, 434
Msp20I TGGCCA 1 cut(s) 128
MspI CCGG 2 cut(s) 92, 717
MspR9I CCNGG 1 cut(s) 93
MwoI GCNNNNNNNGC 3 cut(s) 94, 219, 958
NarI GGCGCC 1 cut(s) 6
NciI CCSGG 1 cut(s) 93
NcoI CCATGG 1 cut(s) 336
NdeII GATC 2 cut(s) 859, 931
NlaIII CATG 8 cut(s) 79, 268, 340, 467, 506, 550, 563, 965
NlaIV GGNNCC 3 cut(s) 7, 342, 614
NmeAIII GCCGAG 1 cut(s) 204
NmuCI GTSAC 3 cut(s) 278, 436, 845
NspI RCATGY 1 cut(s) 506
NspV TTCGAA 1 cut(s) 518
PaeI GCATGC 1 cut(s) 506
PaeR7I CTCGAG 1 cut(s) 947
PfeI GAWTC 7 cut(s) 40, 353, 523, 563, 592, 812, 971
PflFI GACNNNGTC 1 cut(s) 272
PflMI CCANNNNNTGG 1 cut(s) 337
PkrI GCNGC 5 cut(s) 22, 52, 90, 155, 215
PleI GAGTC 2 cut(s) 110, 793
PluTI GGCGCC 1 cut(s) 9
PpsI GAGTC 2 cut(s) 110, 793
PspEI GGTNACC 1 cut(s) 845
PspN4I GGNNCC 3 cut(s) 7, 342, 614
PspPI GGNCC 1 cut(s) 274
PspXI VCTCGAGB 1 cut(s) 947
PstNI CAGNNNCTG 1 cut(s) 486
PsuI RGATCY 1 cut(s) 931
PsyI GACNNNGTC 1 cut(s) 272
RsaI GTAC 1 cut(s) 748
RsaNI GTAC 1 cut(s) 747
RseI CAYNNNNRTG 2 cut(s) 176, 434
SaqAI TTAA 3 cut(s) 372, 423, 1102
SatI GCNGC 5 cut(s) 21, 51, 89, 154, 214
Sau3AI GATC 2 cut(s) 859, 931
Sau96I GGNCC 1 cut(s) 274
SchI GAGTC 2 cut(s) 110, 794
ScrFI CCNGG 1 cut(s) 93
SduI GDGCHC 2 cut(s) 477, 575
SfaNI GCATC 4 cut(s) 676, 717, 806, 814
SfoI GGCGCC 1 cut(s) 7
Sfr274I CTCGAG 1 cut(s) 947
SfuI TTCGAA 1 cut(s) 518
SinI GGWCC 1 cut(s) 274
SlaI CTCGAG 1 cut(s) 947
SmiMI CAYNNNNRTG 2 cut(s) 176, 434
SmlI CTYRAG 1 cut(s) 947
SmoI CTYRAG 1 cut(s) 947
SphI GCATGC 1 cut(s) 506
Sse9I AATT 8 cut(s) 204, 514, 681, 878, 919, 975, 1063, 1099
SsiI CCGC 7 cut(s) 18, 51, 213, 292, 298, 304, 494
SspDI GGCGCC 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 91
StyI CCWWGG 2 cut(s) 336, 694
TaaI ACNGT 4 cut(s) 233, 408, 488, 1058
TaiI ACGT 1 cut(s) 784
TaqI TCGA 4 cut(s) 147, 518, 743, 948
TasI AATT 8 cut(s) 204, 514, 681, 878, 919, 975, 1063, 1099
TatI WGTACW 1 cut(s) 746
TauI GCSGC 2 cut(s) 53, 216
TfiI GAWTC 7 cut(s) 40, 353, 523, 563, 592, 812, 971
Tru1I TTAA 3 cut(s) 372, 423, 1102
Tru9I TTAA 3 cut(s) 372, 423, 1102
TscAI CASTG 2 cut(s) 236, 475
TseFI GTSAC 3 cut(s) 278, 436, 845
TseI GCWGC 3 cut(s) 20, 88, 153
Tsp45I GTSAC 3 cut(s) 278, 436, 845
TspDTI ATGAA 4 cut(s) 563, 572, 942, 981
TspGWI ACGGA 6 cut(s) 241, 266, 309, 415, 519, 693
TspRI CASTG 2 cut(s) 236, 475
Tth111I GACNNNGTC 1 cut(s) 272
Van91I CCANNNNNTGG 1 cut(s) 337
VpaK11BI GGWCC 1 cut(s) 274
XapI RAATTY 2 cut(s) 878, 1063
XceI RCATGY 1 cut(s) 506
XhoI CTCGAG 1 cut(s) 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.