Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006004

Physical Location & Seq

Genomic Coordinates Forward (+)

16234994 .. 16236823

Gene Structure 1830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG177200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGAGCTCAGCTTAGATTCCAACAGGGTCTTCGTCCCCAAGACCATCTCCGAGTTTCTGTCACAAGTCTCGGCCGTTAAAGACGGCGCTCAGAGGTCGTTGAAGCTTGAAGAGTATGTGAAAAGACTCGAAGATGAAATGAGGAAGATCGAGGTTTTCAAGAGGGAGCTTCCTCTGTGTATGGTTATATTGAAAGATGCGATTGAGAGATTGAAAGAGGAAGTAATGCAGTGCGGGAAAGTGGAAGATCGGGCGGTGATTGAAGAGTTCATACCGTTGAAGAAGAAGGATGAGAATGAAGGGGTAGTTTCGGAAAAGGAGAATAGTGACATGAAGAGCTGGATGAGCTCTGCTCAGCTCTGGAGCACTAATATCAACGTTGATTACAGCAATTCAGGACTCAAAATGAGAAATGAGGATGATGATCGGTCTGTGCCTGAGAACCCAATTGAGATAAGTAATAAGAGAAGCAGGGGAGGGGCGTTTGTGCCATTCAAGGGAAATTATGAGTCTGGTTTTGCGAGGACTTGTGTGAAGGAAGACAAGGAGGTTTCACAGGTGCCAAGCCTTTCTCTGATGACTCCAACGTCTGAACTTGGTGGCTTTAATAATGCAAACTCTAAGAGCAGCACTAGAGGAGGTTCTGGTCCATCTTTGGCGAAGTTACAGATTGAGCATCAGCAGCAGCAACAATGTTTTAGGAAACAAAGGCGATGCTGGTCACCGGAGCTTCATCGCCGATTTGTTGATGCACTTCAACAGCTTGGGGGATCACAAGTAGCTACTCCTAAACAGATTAGAGAGCTTATGCAGGTAGATGGTCTCACCAATGATGAAGTGAAAAGCCATTTGCAGAAATACAGACTTCACGTCCGAAAGGTACCAGCTTCTTCTGCTGGTGAAGCCAGTGGTTTATGGATGAACCAAGATCACTGTGGAGACCATTCAAAGGCAAATACTTCACAGTCTGGTTCTCCACAGGGTCCCCTCCTTGGTATGGAGTTTGCCAAAGGTGGTCAATCTACAACCGGAGGCAACAGCACAGAAACAGAAGAAGATGATCAGAATTCAGACGGCCACAGTTGGAAAGGGGCACGCCACAACTCCGGCGGAGATGTAGAGTCTTGTACTAATCCCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

380

Amino Acids

42.34

Weight (kDa)

6.0

Isoelectric Point (pI)

58.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HHO5_N	PF26575	5 - 76	1.4e-29	HHO5-like, N-terminal domain
Myb_DNA-binding	PF00249	237 - 288	1e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37180 AT4G37180 AT4G37180
fragaria_vesca	FvH4_1g15450 FvH4_1g15470 FvH4_1g15470 FvH4_1g15470 FvH4_1g15470
malus_domestica	MD02G1166700.v1.1 MD15G1279200.v1.1
prunus_persica	Prupe.7G138100_v2.0.a1 Prupe.7G138100_v2.0.a1
pyrus_communis	pycom02g13400 pycom15g24200
rosa_chinensis	RchiOBHm_Chr2g0104701
rosa_laevigata	RLG00000017352
rosa_multiflora	Rmu_ssc0000441.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138820
rosa_rugosa	Rorug02G0121700 Rorug02G0121800
rosa_samantha	Rh2AG172100 Rh2BG179700 Rh2CG177200 Rh2DG178400
rosa_wichuraiana	Rw0G008620 Rw2G013470 Rw2G013530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	586
Acc36I	ACCTGC	1 cut(s)	802
Acc65I	GGTACC	1 cut(s)	880
AccB1I	GGYRCC	2 cut(s)	559, 880
AciI	CCGC	3 cut(s)	234, 254, 1110
AclI	AACGTT	1 cut(s)	378
AclWI	GGATC	1 cut(s)	778
AcoI	YGGCCR	2 cut(s)	72, 1075
AcsI	RAATTY	1 cut(s)	1066
AfaI	GTAC	2 cut(s)	882, 1129
AfiI	CCNNNNNNNGG	4 cut(s)	497, 949, 992, 997
AhdI	GACNNNNNGTC	1 cut(s)	869
AjiI	CACGTC	1 cut(s)	871
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
Alw21I	GWGCWC	3 cut(s)	9, 350, 368
Alw26I	GTCTC	3 cut(s)	73, 827, 933
AlwI	GGATC	1 cut(s)	778
AoxI	GGCC	2 cut(s)	72, 1075
ApeKI	GCWGC	3 cut(s)	627, 682, 685
ApoI	RAATTY	1 cut(s)	1066
Asp718I	GGTACC	1 cut(s)	880
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	2 cut(s)	647, 983
AsuHPI	GGTGA	4 cut(s)	268, 714, 817, 911
AvaII	GGWCC	2 cut(s)	647, 983
BaeGI	GKGCMC	1 cut(s)	1096
BanI	GGYRCC	2 cut(s)	559, 880
BanII	GRGCYC	2 cut(s)	9, 350
BarI	GAAGNNNNNNTAC	2 cut(s)	255, 287
BbsI	GAAGAC	2 cut(s)	22, 546
Bbv12I	GWGCWC	3 cut(s)	9, 350, 368
BbvI	GCAGC	3 cut(s)	639, 694, 697
BccI	CCATC	3 cut(s)	53, 658, 812
BceAI	ACGGC	3 cut(s)	59, 100, 1090
BclI	TGATCA	1 cut(s)	1060
BcoDI	GTCTC	3 cut(s)	73, 827, 933
BfaI	CTAG	1 cut(s)	633
BfoI	RGCGCY	1 cut(s)	90
BfuAI	ACCTGC	1 cut(s)	802
BisI	GCNGC	3 cut(s)	628, 683, 686
BlpI	GCTNAGC	2 cut(s)	8, 354
BlsI	GCNGC	3 cut(s)	629, 684, 687
Bme18I	GGWCC	2 cut(s)	647, 983
BmeRI	GACNNNNNGTC	1 cut(s)	869
BmgBI	CACGTC	1 cut(s)	871
BmgT120I	GGNCC	2 cut(s)	647, 983
BmiI	GGNNCC	4 cut(s)	561, 882, 984, 985
BmsI	GCATC	4 cut(s)	187, 685, 704, 739
BpiI	GAAGAC	2 cut(s)	22, 546
BplI	GAGNNNNNCTC	2 cut(s)	337, 369
BpmI	CTGGAG	1 cut(s)	382
Bpu1102I	GCTNAGC	2 cut(s)	8, 354
BsaBI	GATNNNNATC	1 cut(s)	423
BsaI	GGTCTC	2 cut(s)	827, 933
BsaJI	CCNNGG	1 cut(s)	991
BsaWI	WCCGGW	2 cut(s)	724, 1028
Bsc4I	CCNNNNNNNGG	4 cut(s)	497, 949, 992, 997
Bse1I	ACTGG	1 cut(s)	906
Bse8I	GATNNNNATC	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	991
BseGI	GGATG	4 cut(s)	295, 348, 424, 924
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	4 cut(s)	497, 949, 992, 997
BseMII	CTCAG	4 cut(s)	22, 104, 368, 429
BseNI	ACTGG	1 cut(s)	906
BseRI	GAGGAG	1 cut(s)	651
BseSI	GKGCMC	1 cut(s)	1096
BseX3I	CGGCCG	1 cut(s)	72
BseXI	GCAGC	3 cut(s)	639, 694, 697
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	74, 1077
BshNI	GGYRCC	2 cut(s)	559, 880
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	3 cut(s)	9, 350, 368
BsiSI	CCGG	3 cut(s)	725, 1029, 1107
BslFI	GGGAC	2 cut(s)	20, 969
BslI	CCNNNNNNNGG	4 cut(s)	497, 949, 992, 997
BsmAI	GTCTC	3 cut(s)	73, 827, 933
BsmFI	GGGAC	2 cut(s)	20, 969
BsnI	GGCC	2 cut(s)	74, 1077
Bso31I	GGTCTC	2 cut(s)	827, 933
Bsp1286I	GDGCHC	4 cut(s)	9, 350, 368, 1096
Bsp143I	GATC	6 cut(s)	147, 247, 424, 770, 928, 1060
Bsp1720I	GCTNAGC	2 cut(s)	8, 354
BspACI	CCGC	3 cut(s)	234, 254, 1110
BspANI	GGCC	2 cut(s)	74, 1077
BspCNI	CTCAG	4 cut(s)	21, 103, 367, 430
BspLI	GGNNCC	4 cut(s)	561, 882, 984, 985
BspMI	ACCTGC	1 cut(s)	802
BspPI	GGATC	1 cut(s)	778
BspQI	GCTCTTC	1 cut(s)	329
BspT107I	GGYRCC	2 cut(s)	559, 880
BspTNI	GGTCTC	2 cut(s)	827, 933
BsrI	ACTGG	1 cut(s)	906
BssECI	CCNNGG	1 cut(s)	991
BssMI	GATC	6 cut(s)	147, 247, 424, 770, 928, 1060
BssT1I	CCWWGG	1 cut(s)	991
Bst4CI	ACNGT	4 cut(s)	276, 935, 966, 1082
Bst6I	CTCTTC	3 cut(s)	105, 258, 329
BstC8I	GCNNGC	1 cut(s)	1096
BstDEI	CTNAG	6 cut(s)	8, 13, 90, 354, 438, 621
BstEII	GGTNACC	1 cut(s)	720
BstF5I	GGATG	4 cut(s)	295, 348, 424, 924
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	6 cut(s)	150, 250, 427, 773, 931, 1063
BstMAI	GTCTC	3 cut(s)	73, 827, 933
BstMBI	GATC	6 cut(s)	147, 247, 424, 770, 928, 1060
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	4 cut(s)	345, 682, 893, 902
BstPI	GGTNACC	1 cut(s)	720
BstSLI	GKGCMC	1 cut(s)	1096
BstV1I	GCAGC	3 cut(s)	639, 694, 697
BstV2I	GAAGAC	2 cut(s)	22, 546
BstZI	CGGCCG	1 cut(s)	72
BsuRI	GGCC	2 cut(s)	74, 1077
BtgZI	GCGATG	2 cut(s)	719, 727
BtrI	CACGTC	1 cut(s)	871
BtsCI	GGATG	4 cut(s)	295, 348, 424, 924
BtsI	GCAGTG	1 cut(s)	236
BtsIMutI	CAGTG	3 cut(s)	236, 913, 931
BveI	ACCTGC	1 cut(s)	802
Cac8I	GCNNGC	1 cut(s)	1096
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	2 cut(s)	647, 983
Csp6I	GTAC	2 cut(s)	881, 1128
CviAII	CATG	1 cut(s)	331
CviQI	GTAC	2 cut(s)	881, 1128
DdeI	CTNAG	6 cut(s)	8, 13, 90, 354, 438, 621
DpnI	GATC	6 cut(s)	149, 249, 426, 772, 930, 1062
DpnII	GATC	6 cut(s)	147, 247, 424, 770, 928, 1060
DrdI	GACNNNNNNGTC	1 cut(s)	586
DriI	GACNNNNNGTC	1 cut(s)	869
DseDI	GACNNNNNNGTC	1 cut(s)	586
EaeI	YGGCCR	2 cut(s)	72, 1075
EagI	CGGCCG	1 cut(s)	72
Eam1104I	CTCTTC	3 cut(s)	105, 258, 329
Eam1105I	GACNNNNNGTC	1 cut(s)	869
EarI	CTCTTC	3 cut(s)	105, 258, 329
EciI	GGCGGA	1 cut(s)	1125
Ecl136II	GAGCTC	2 cut(s)	7, 348
EclXI	CGGCCG	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	991
Eco24I	GRGCYC	2 cut(s)	9, 350
Eco31I	GGTCTC	2 cut(s)	827, 933
Eco47I	GGWCC	2 cut(s)	647, 983
Eco52I	CGGCCG	1 cut(s)	72
Eco53kI	GAGCTC	2 cut(s)	7, 348
Eco91I	GGTNACC	1 cut(s)	720
EcoICRI	GAGCTC	2 cut(s)	7, 348
EcoO109I	RGGNCCY	1 cut(s)	983
EcoO65I	GGTNACC	1 cut(s)	720
EcoRI	GAATTC	1 cut(s)	1066
EcoT14I	CCWWGG	1 cut(s)	991
EcoT38I	GRGCYC	2 cut(s)	9, 350
ErhI	CCWWGG	1 cut(s)	991
FaeI	CATG	1 cut(s)	334
FaiI	YATR	9 cut(s)	117, 182, 188, 272, 332, 507, 809, 916, 998
FaqI	GGGAC	2 cut(s)	20, 969
FatI	CATG	1 cut(s)	330
FauI	CCCGC	1 cut(s)	227
FbaI	TGATCA	1 cut(s)	1060
Fnu4HI	GCNGC	3 cut(s)	628, 683, 686
FokI	GGATG	4 cut(s)	302, 355, 431, 931
FriOI	GRGCYC	2 cut(s)	9, 350
Fsp4HI	GCNGC	3 cut(s)	628, 683, 686
FspBI	CTAG	1 cut(s)	633
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	3 cut(s)	628, 683, 686
GsuI	CTGGAG	1 cut(s)	382
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	2 cut(s)	74, 1077
HapII	CCGG	3 cut(s)	725, 1029, 1107
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	1 cut(s)	334
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	6 cut(s)	17, 126, 399, 509, 580, 1121
HpaII	CCGG	3 cut(s)	725, 1029, 1107
HphI	GGTGA	4 cut(s)	268, 714, 817, 911
Hpy188I	TCNGA	8 cut(s)	52, 93, 313, 576, 592, 875, 1065, 1072
Hpy188III	TCNNGA	3 cut(s)	160, 361, 396
HpyAV	CCTTC	3 cut(s)	280, 293, 529
HpyCH4III	ACNGT	4 cut(s)	276, 935, 966, 1082
HpyCH4IV	ACGT	3 cut(s)	378, 587, 870
HpyCH4V	TGCA	5 cut(s)	229, 614, 752, 811, 853
HpyF10VI	GCNNNNNNNGC	4 cut(s)	345, 682, 893, 902
HpyF3I	CTNAG	6 cut(s)	8, 13, 90, 354, 438, 621
HpySE526I	ACGT	3 cut(s)	378, 587, 870
Hsp92II	CATG	1 cut(s)	334
HspAI	GCGC	1 cut(s)	87
KflI	GGGWCCC	1 cut(s)	983
KpnI	GGTACC	1 cut(s)	884
Ksp22I	TGATCA	1 cut(s)	1060
Kzo9I	GATC	6 cut(s)	147, 247, 424, 770, 928, 1060
LguI	GCTCTTC	1 cut(s)	329
LmnI	GCTCC	4 cut(s)	4, 166, 363, 727
Lsp1109I	GCAGC	3 cut(s)	639, 694, 697
LweI	GCATC	4 cut(s)	187, 685, 704, 739
MaeI	CTAG	1 cut(s)	633
MaeII	ACGT	3 cut(s)	378, 587, 870
MaeIII	GTNAC	4 cut(s)	60, 326, 663, 720
MalI	GATC	6 cut(s)	149, 249, 426, 772, 930, 1062
MboI	GATC	6 cut(s)	147, 247, 424, 770, 928, 1060
MfeI	CAATTG	1 cut(s)	447
MhlI	GDGCHC	4 cut(s)	9, 350, 368, 1096
MluCI	AATT	4 cut(s)	391, 447, 502, 1066
MlyI	GAGTC	5 cut(s)	120, 393, 518, 574, 1130
MmeI	TCCRAC	3 cut(s)	45, 608, 1064
MseI	TTAA	2 cut(s)	78, 606
MspI	CCGG	3 cut(s)	725, 1029, 1107
MunI	CAATTG	1 cut(s)	447
MwoI	GCNNNNNNNGC	4 cut(s)	345, 682, 893, 902
NdeII	GATC	6 cut(s)	147, 247, 424, 770, 928, 1060
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	4 cut(s)	561, 882, 984, 985
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	3 cut(s)	60, 326, 720
PciSI	GCTCTTC	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	3 cut(s)	629, 684, 687
PleI	GAGTC	5 cut(s)	120, 393, 517, 574, 1129
PpsI	GAGTC	5 cut(s)	120, 393, 517, 574, 1129
PpuMI	RGGWCCY	1 cut(s)	983
Psp124BI	GAGCTC	2 cut(s)	9, 350
Psp1406I	AACGTT	1 cut(s)	378
Psp5II	RGGWCCY	1 cut(s)	983
PspEI	GGTNACC	1 cut(s)	720
PspN4I	GGNNCC	4 cut(s)	561, 882, 984, 985
PspPI	GGNCC	2 cut(s)	647, 983
PspPPI	RGGWCCY	1 cut(s)	983
RsaI	GTAC	2 cut(s)	882, 1129
RsaNI	GTAC	2 cut(s)	881, 1128
SacI	GAGCTC	2 cut(s)	9, 350
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	2 cut(s)	78, 606
SatI	GCNGC	3 cut(s)	628, 683, 686
Sau3AI	GATC	6 cut(s)	147, 247, 424, 770, 928, 1060
Sau96I	GGNCC	2 cut(s)	647, 983
SchI	GAGTC	5 cut(s)	120, 393, 518, 574, 1130
SduI	GDGCHC	4 cut(s)	9, 350, 368, 1096
SfaNI	GCATC	4 cut(s)	187, 685, 704, 739
SinI	GGWCC	2 cut(s)	647, 983
Sse9I	AATT	4 cut(s)	391, 447, 502, 1066
SsiI	CCGC	3 cut(s)	234, 254, 1110
SspMI	CTAG	1 cut(s)	633
SstI	GAGCTC	2 cut(s)	9, 350
StyI	CCWWGG	1 cut(s)	991
TaaI	ACNGT	4 cut(s)	276, 935, 966, 1082
TaiI	ACGT	3 cut(s)	381, 590, 873
TaqI	TCGA	2 cut(s)	129, 150
TaqII	GACCGA	1 cut(s)	417
TasI	AATT	4 cut(s)	391, 447, 502, 1066
TatI	WGTACW	1 cut(s)	1127
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	2 cut(s)	78, 606
Tru9I	TTAA	2 cut(s)	78, 606
TscAI	CASTG	3 cut(s)	236, 913, 938
TseFI	GTSAC	3 cut(s)	60, 326, 720
TseI	GCWGC	3 cut(s)	627, 682, 685
Tsp45I	GTSAC	3 cut(s)	60, 326, 720
TspDTI	ATGAA	7 cut(s)	150, 259, 312, 347, 722, 849, 935
TspRI	CASTG	3 cut(s)	236, 913, 938
VpaK11BI	GGWCC	2 cut(s)	647, 983
XapI	RAATTY	1 cut(s)	1066
XcmI	CCANNNNNNNNNTGG	1 cut(s)	932
XspI	CTAG	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.