Rh2BG179700
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0006004
Physical Location & Seq
Forward (+)
15963401 .. 15965249
1849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG179700.1

Sequence Viewer

Length: 1182 bp
ATGCTAGAGACCCCAAAACAGAGAGAGAACAAAACCAACATGGAGCTCAGCTTAGATTCCAACATGGTCTTCGTCCCCAAGACCATCTCCGAGTTTCTGTCACAAGTCTCGGCCGTTAAAGACGGCGCTCAGAGGTCGTTGAAGCTTGAAGAGTATGTGAAAAGACTCGAAGATGAAATGAGGAAGATCGAGGTTTTCAAGAGGGAGCTTCCTCTGTGTATGGTTATATTGAAAGATGCGATTGAGAGATTGAAAGAGGAAGTAATGCAGTGCGGGAAAGTGGAAGATCGGGCGGTGATTGAAGAGTTCATACCGTTGAAGAAGAAGGATGAGAATGAAGGGGTAGTTTCGGAAAAGGAGAATAGTGACATGAAGAGCTGGATGAGCTCTGCTCAGCTCTGGAGCACTAATATCAACGTTGATTACAGCAAATCAGGACTCAAAATGAGAAATGAGGATGATGATCGGTCTGTGCCTGAGAACCCAATTGAGATAAGTAATAAGAGAAGCAGGGGAGGGGCGTTTGTGCCATTCAAGGGAAATTATGAGTCTGGTTTTGCGAGGACTTGTGTGAAGGAAGACAAGGAGGTTTCACAGGTGCCAAGCCTTTCTCTGATGACTCCAACGTCTGAACTTGGTGGCTTTAATAATGCAAACTCTAAGAGCAGCACTAGAGGAGGTTCTGGTCCATCTTTGACGAAGTTACAGATTGAGCCTCAGCAGCAGCAACAATGTTTTAGGAAACAAAGGCGATGCTGGTCACCGGAGCTTCATCGCCGATTTGTTGATGCACTTCAACAGCTTGGGGGATCACAAGTAGCTACTCCTAAACAGATTAGAGAGCTTATGCAGGTAGATGGTCTCACCAATGACGAAGTGAAAAGCCATTTGCAGAAATACAGACTTCACGTCCGAAAGGTACCAGCTTCTTCTGCTGGTGAAGCCAGTGGTTTATGGATGAACCAAGATCACTGTGGAGACAATTCAAAGGCAAATACTTCACAGTCTGGTTCTCCACAGGGTCCCCTCCTTGGTATGGGGTTTGCCAAAGGTGGTCAATCTACAACCGGAGGCAACAGCACAGAAACAGAAGAAGATGATCAGAATTCAGACGGCCACAGTTGGAAAGGGGCACGCCACAACTCCGGTGGAGATGTAGAGTCTTGTACTAATCCCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

393

Amino Acids

43.8

Weight (kDa)

6.18

Isoelectric Point (pI)

58.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 17 - 89 6.8e-30 HHO5-like, N-terminal domain
Myb_DNA-binding PF00249 250 - 301 1.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 625
Acc36I ACCTGC 1 cut(s) 841
Acc65I GGTACC 1 cut(s) 919
AccB1I GGYRCC 2 cut(s) 598, 919
AciI CCGC 2 cut(s) 273, 293
AclI AACGTT 1 cut(s) 417
AclWI GGATC 1 cut(s) 817
AcoI YGGCCR 2 cut(s) 111, 1114
AcsI RAATTY 1 cut(s) 1105
AfaI GTAC 2 cut(s) 921, 1168
AfiI CCNNNNNNNGG 3 cut(s) 536, 1031, 1036
AhdI GACNNNNNGTC 1 cut(s) 908
AjiI CACGTC 1 cut(s) 910
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
Alw21I GWGCWC 3 cut(s) 48, 389, 407
Alw26I GTCTC 4 cut(s) 2, 112, 866, 972
AlwI GGATC 1 cut(s) 817
AoxI GGCC 2 cut(s) 111, 1114
ApeKI GCWGC 3 cut(s) 666, 721, 724
ApoI RAATTY 1 cut(s) 1105
Asp718I GGTACC 1 cut(s) 919
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 2 cut(s) 686, 1022
AsuHPI GGTGA 4 cut(s) 307, 753, 856, 950
AvaII GGWCC 2 cut(s) 686, 1022
BaeGI GKGCMC 1 cut(s) 1135
BanI GGYRCC 2 cut(s) 598, 919
BanII GRGCYC 2 cut(s) 48, 389
BarI GAAGNNNNNNTAC 2 cut(s) 294, 326
BbsI GAAGAC 2 cut(s) 61, 585
Bbv12I GWGCWC 3 cut(s) 48, 389, 407
BbvCI CCTCAGC 1 cut(s) 717
BbvI GCAGC 3 cut(s) 678, 733, 736
BccI CCATC 3 cut(s) 92, 697, 851
BceAI ACGGC 3 cut(s) 98, 139, 1129
BclI TGATCA 1 cut(s) 1099
BcoDI GTCTC 4 cut(s) 2, 112, 866, 972
BfaI CTAG 2 cut(s) 5, 672
BfoI RGCGCY 1 cut(s) 129
BfuAI ACCTGC 1 cut(s) 841
BisI GCNGC 3 cut(s) 667, 722, 725
BlpI GCTNAGC 2 cut(s) 47, 393
BlsI GCNGC 3 cut(s) 668, 723, 726
Bme18I GGWCC 2 cut(s) 686, 1022
BmeRI GACNNNNNGTC 1 cut(s) 908
BmgBI CACGTC 1 cut(s) 910
BmgT120I GGNCC 2 cut(s) 686, 1022
BmiI GGNNCC 4 cut(s) 600, 921, 1023, 1024
BmsI GCATC 3 cut(s) 226, 743, 778
BpiI GAAGAC 2 cut(s) 61, 585
BplI GAGNNNNNCTC 2 cut(s) 376, 408
BpmI CTGGAG 1 cut(s) 421
Bpu10I CCTNAGC 1 cut(s) 717
Bpu1102I GCTNAGC 2 cut(s) 47, 393
BsaBI GATNNNNATC 1 cut(s) 462
BsaI GGTCTC 2 cut(s) 2, 866
BsaJI CCNNGG 1 cut(s) 1030
BsaWI WCCGGW 3 cut(s) 763, 1067, 1145
Bsc4I CCNNNNNNNGG 3 cut(s) 536, 1031, 1036
Bse1I ACTGG 1 cut(s) 945
Bse8I GATNNNNATC 1 cut(s) 462
BseDI CCNNGG 1 cut(s) 1030
BseGI GGATG 4 cut(s) 334, 387, 463, 963
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 3 cut(s) 536, 1031, 1036
BseMII CTCAG 5 cut(s) 61, 143, 407, 468, 731
BseNI ACTGG 1 cut(s) 945
BseRI GAGGAG 1 cut(s) 690
BseSI GKGCMC 1 cut(s) 1135
BseX3I CGGCCG 1 cut(s) 111
BseXI GCAGC 3 cut(s) 678, 733, 736
Bsh1285I CGRYCG 1 cut(s) 114
BshFI GGCC 2 cut(s) 113, 1116
BshNI GGYRCC 2 cut(s) 598, 919
BsiEI CGRYCG 1 cut(s) 114
BsiHKAI GWGCWC 3 cut(s) 48, 389, 407
BsiSI CCGG 3 cut(s) 764, 1068, 1146
BslFI GGGAC 2 cut(s) 59, 1008
BslI CCNNNNNNNGG 3 cut(s) 536, 1031, 1036
BsmAI GTCTC 4 cut(s) 2, 112, 866, 972
BsmFI GGGAC 2 cut(s) 59, 1008
BsnI GGCC 2 cut(s) 113, 1116
Bso31I GGTCTC 2 cut(s) 2, 866
Bsp1286I GDGCHC 4 cut(s) 48, 389, 407, 1135
Bsp143I GATC 6 cut(s) 186, 286, 463, 809, 967, 1099
Bsp1720I GCTNAGC 2 cut(s) 47, 393
BspACI CCGC 2 cut(s) 273, 293
BspANI GGCC 2 cut(s) 113, 1116
BspCNI CTCAG 5 cut(s) 60, 142, 406, 469, 730
BspLI GGNNCC 4 cut(s) 600, 921, 1023, 1024
BspMI ACCTGC 1 cut(s) 841
BspPI GGATC 1 cut(s) 817
BspQI GCTCTTC 1 cut(s) 368
BspT107I GGYRCC 2 cut(s) 598, 919
BspTNI GGTCTC 2 cut(s) 2, 866
BsrI ACTGG 1 cut(s) 945
BssECI CCNNGG 1 cut(s) 1030
BssMI GATC 6 cut(s) 186, 286, 463, 809, 967, 1099
BssT1I CCWWGG 1 cut(s) 1030
Bst4CI ACNGT 4 cut(s) 315, 974, 1005, 1121
Bst6I CTCTTC 3 cut(s) 144, 297, 368
BstC8I GCNNGC 1 cut(s) 1135
BstDEI CTNAG 7 cut(s) 47, 52, 129, 393, 477, 660, 717
BstEII GGTNACC 1 cut(s) 759
BstF5I GGATG 4 cut(s) 334, 387, 463, 963
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 6 cut(s) 189, 289, 466, 812, 970, 1102
BstMAI GTCTC 4 cut(s) 2, 112, 866, 972
BstMBI GATC 6 cut(s) 186, 286, 463, 809, 967, 1099
BstMCI CGRYCG 1 cut(s) 114
BstMWI GCNNNNNNNGC 4 cut(s) 384, 721, 932, 941
BstPI GGTNACC 1 cut(s) 759
BstSLI GKGCMC 1 cut(s) 1135
BstV1I GCAGC 3 cut(s) 678, 733, 736
BstV2I GAAGAC 2 cut(s) 61, 585
BstZI CGGCCG 1 cut(s) 111
BsuRI GGCC 2 cut(s) 113, 1116
BtgZI GCGATG 2 cut(s) 758, 766
BtrI CACGTC 1 cut(s) 910
BtsCI GGATG 4 cut(s) 334, 387, 463, 963
BtsI GCAGTG 1 cut(s) 275
BtsIMutI CAGTG 3 cut(s) 275, 952, 970
BveI ACCTGC 1 cut(s) 841
Cac8I GCNNGC 1 cut(s) 1135
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 2 cut(s) 686, 1022
Csp6I GTAC 2 cut(s) 920, 1167
CspCI CAANNNNNGTGG 2 cut(s) 1129, 1164
CviAII CATG 3 cut(s) 40, 64, 370
CviQI GTAC 2 cut(s) 920, 1167
DdeI CTNAG 7 cut(s) 47, 52, 129, 393, 477, 660, 717
DpnI GATC 6 cut(s) 188, 288, 465, 811, 969, 1101
DpnII GATC 6 cut(s) 186, 286, 463, 809, 967, 1099
DrdI GACNNNNNNGTC 1 cut(s) 625
DriI GACNNNNNGTC 1 cut(s) 908
DseDI GACNNNNNNGTC 1 cut(s) 625
EaeI YGGCCR 2 cut(s) 111, 1114
EagI CGGCCG 1 cut(s) 111
Eam1104I CTCTTC 3 cut(s) 144, 297, 368
Eam1105I GACNNNNNGTC 1 cut(s) 908
EarI CTCTTC 3 cut(s) 144, 297, 368
Ecl136II GAGCTC 2 cut(s) 46, 387
EclXI CGGCCG 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 1030
Eco24I GRGCYC 2 cut(s) 48, 389
Eco31I GGTCTC 2 cut(s) 2, 866
Eco47I GGWCC 2 cut(s) 686, 1022
Eco52I CGGCCG 1 cut(s) 111
Eco53kI GAGCTC 2 cut(s) 46, 387
Eco91I GGTNACC 1 cut(s) 759
EcoICRI GAGCTC 2 cut(s) 46, 387
EcoO109I RGGNCCY 1 cut(s) 1022
EcoO65I GGTNACC 1 cut(s) 759
EcoRI GAATTC 1 cut(s) 1105
EcoT14I CCWWGG 1 cut(s) 1030
EcoT38I GRGCYC 2 cut(s) 48, 389
ErhI CCWWGG 1 cut(s) 1030
FaeI CATG 3 cut(s) 43, 67, 373
FaqI GGGAC 2 cut(s) 59, 1008
FatI CATG 3 cut(s) 39, 63, 369
FauI CCCGC 1 cut(s) 266
FbaI TGATCA 1 cut(s) 1099
Fnu4HI GCNGC 3 cut(s) 667, 722, 725
FokI GGATG 4 cut(s) 341, 394, 470, 970
FriOI GRGCYC 2 cut(s) 48, 389
Fsp4HI GCNGC 3 cut(s) 667, 722, 725
FspBI CTAG 2 cut(s) 5, 672
GlaI GCGC 1 cut(s) 127
GluI GCNGC 3 cut(s) 667, 722, 725
GsuI CTGGAG 1 cut(s) 421
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 2 cut(s) 113, 1116
HapII CCGG 3 cut(s) 764, 1068, 1146
HhaI GCGC 1 cut(s) 128
Hin1II CATG 3 cut(s) 43, 67, 373
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 6 cut(s) 56, 165, 438, 548, 619, 1160
HpaII CCGG 3 cut(s) 764, 1068, 1146
HphI GGTGA 4 cut(s) 307, 753, 856, 950
Hpy188I TCNGA 8 cut(s) 91, 132, 352, 615, 631, 914, 1104, 1111
Hpy188III TCNNGA 3 cut(s) 199, 400, 435
HpyAV CCTTC 3 cut(s) 319, 332, 568
HpyCH4III ACNGT 4 cut(s) 315, 974, 1005, 1121
HpyCH4IV ACGT 3 cut(s) 417, 626, 909
HpyCH4V TGCA 5 cut(s) 268, 653, 791, 850, 892
HpyF10VI GCNNNNNNNGC 4 cut(s) 384, 721, 932, 941
HpyF3I CTNAG 7 cut(s) 47, 52, 129, 393, 477, 660, 717
HpySE526I ACGT 3 cut(s) 417, 626, 909
Hsp92II CATG 3 cut(s) 43, 67, 373
HspAI GCGC 1 cut(s) 126
KflI GGGWCCC 1 cut(s) 1022
KpnI GGTACC 1 cut(s) 923
Ksp22I TGATCA 1 cut(s) 1099
Kzo9I GATC 6 cut(s) 186, 286, 463, 809, 967, 1099
LguI GCTCTTC 1 cut(s) 368
LmnI GCTCC 4 cut(s) 43, 205, 402, 766
Lsp1109I GCAGC 3 cut(s) 678, 733, 736
LweI GCATC 3 cut(s) 226, 743, 778
MaeI CTAG 2 cut(s) 5, 672
MaeII ACGT 3 cut(s) 417, 626, 909
MaeIII GTNAC 4 cut(s) 99, 365, 702, 759
MalI GATC 6 cut(s) 188, 288, 465, 811, 969, 1101
MboI GATC 6 cut(s) 186, 286, 463, 809, 967, 1099
MfeI CAATTG 1 cut(s) 486
MhlI GDGCHC 4 cut(s) 48, 389, 407, 1135
MluCI AATT 4 cut(s) 486, 541, 982, 1105
MlyI GAGTC 5 cut(s) 159, 432, 557, 613, 1169
MmeI TCCRAC 3 cut(s) 84, 647, 1103
MseI TTAA 2 cut(s) 117, 645
MspI CCGG 3 cut(s) 764, 1068, 1146
MunI CAATTG 1 cut(s) 486
MwoI GCNNNNNNNGC 4 cut(s) 384, 721, 932, 941
NdeII GATC 6 cut(s) 186, 286, 463, 809, 967, 1099
NlaIII CATG 3 cut(s) 43, 67, 373
NlaIV GGNNCC 4 cut(s) 600, 921, 1023, 1024
NmeAIII GCCGAG 1 cut(s) 89
NmuCI GTSAC 3 cut(s) 99, 365, 759
PciSI GCTCTTC 1 cut(s) 368
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 3 cut(s) 668, 723, 726
PleI GAGTC 5 cut(s) 159, 432, 556, 613, 1168
PpsI GAGTC 5 cut(s) 159, 432, 556, 613, 1168
PpuMI RGGWCCY 1 cut(s) 1022
Psp124BI GAGCTC 2 cut(s) 48, 389
Psp1406I AACGTT 1 cut(s) 417
Psp5II RGGWCCY 1 cut(s) 1022
PspEI GGTNACC 1 cut(s) 759
PspN4I GGNNCC 4 cut(s) 600, 921, 1023, 1024
PspPI GGNCC 2 cut(s) 686, 1022
PspPPI RGGWCCY 1 cut(s) 1022
RsaI GTAC 2 cut(s) 921, 1168
RsaNI GTAC 2 cut(s) 920, 1167
SacI GAGCTC 2 cut(s) 48, 389
SapI GCTCTTC 1 cut(s) 368
SaqAI TTAA 2 cut(s) 117, 645
SatI GCNGC 3 cut(s) 667, 722, 725
Sau3AI GATC 6 cut(s) 186, 286, 463, 809, 967, 1099
Sau96I GGNCC 2 cut(s) 686, 1022
SchI GAGTC 5 cut(s) 159, 432, 557, 613, 1169
SduI GDGCHC 4 cut(s) 48, 389, 407, 1135
SfaNI GCATC 3 cut(s) 226, 743, 778
SinI GGWCC 2 cut(s) 686, 1022
Sse9I AATT 4 cut(s) 486, 541, 982, 1105
SsiI CCGC 2 cut(s) 273, 293
SspMI CTAG 2 cut(s) 5, 672
SstI GAGCTC 2 cut(s) 48, 389
StyI CCWWGG 1 cut(s) 1030
TaaI ACNGT 4 cut(s) 315, 974, 1005, 1121
TaiI ACGT 3 cut(s) 420, 629, 912
TaqI TCGA 2 cut(s) 168, 189
TaqII GACCGA 1 cut(s) 456
TasI AATT 4 cut(s) 486, 541, 982, 1105
TatI WGTACW 1 cut(s) 1166
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 2 cut(s) 117, 645
Tru9I TTAA 2 cut(s) 117, 645
TscAI CASTG 3 cut(s) 275, 952, 977
TseFI GTSAC 3 cut(s) 99, 365, 759
TseI GCWGC 3 cut(s) 666, 721, 724
Tsp45I GTSAC 3 cut(s) 99, 365, 759
TspDTI ATGAA 6 cut(s) 189, 298, 351, 386, 761, 974
TspRI CASTG 3 cut(s) 275, 952, 977
VpaK11BI GGWCC 2 cut(s) 686, 1022
XapI RAATTY 1 cut(s) 1105
XcmI CCANNNNNNNNNTGG 2 cut(s) 971, 1145
XspI CTAG 2 cut(s) 5, 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.