Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006004

Physical Location & Seq

Genomic Coordinates Forward (+)

15678904 .. 15680689

Gene Structure 1786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG178400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGTCTTCGTCCCCAAGACCATCTCCGAGTTTCTGTCACAAGTCTCGGCCGTTAAAGACGGCGCTCAGAGGTCGTTGAAGCTTGAAGAGTATGTGAAAAGACTCGAAGATGAAATGAGGAAGATCGAGGTTTTCAAGAGGGAGCTTCCTCTGTGTATGGTTATATTGAAAGATGCGATTGAGAGATTGAAAGAGGAAGTAATGCAGTGCGGGAAAGTGGAAGATCGGGCGGTGATTGAAGAGTTCATACCGTTGAAGAAGAAGGATGAGAATGAAGGGGTAGTTTCGGAAAAGGAGAATAGTGACATGAAGAGCTGGATGAGCTCTGCTCAGCTCTGGAGCACTAATATCAACGTTGATTACAGCAAATCAGGACTCAAAATGAGAAATGAGGATGATGATCGGTCTGTGCCTGAGAACCCAATTGAGATAAGTAATAAGAGAAGCAGGGGAGGGGCGTTTGTGCCATTCAAGGGAAATTATGAGTCTGGTTTTGCGAGGACTTGTGTGAAGGAAGACAAGGAGGTTTCACAGGTGCCAAGCCTTTCTCTGATGACTCCAACGTCTGAACTTGGTGGCTTTAATAATGCAAACTCTAAGAGCAGCACTAGAGGAGGTTCTGGTCCATCTTTGACGAAGTTACAGATTGAGCCTCAGCAGCAGCAACAATGTTTTAGGAAACAAAGGCGATGCTGGTCACCGGAGCTTCATCGCCGATTTGTTGATGCACTTCAACAGCTTGGGGGATCACAAGTAGCTACTCCTAAACAGATTAGAGAGCTTATGCAGGTAGATGGTCTCACCAATGACGAAGTGAAAAGCCATTTGCAGAAATACAGACTTCACGTCCGAAAGGTACCAGCTTCTTCTGCTGGTGAAGCCAGTGGTTTATGGATGAACCAAGATCACTGTGGAGACAATTCAAAGGCAAATACTTCACAGTCTGGTTCTCCACAGGGTCCCCTCCTTGGTATGGGGTTTGCCAAAGGTGGTCAATCTACAACCGGAGGCAACAGCACAGAAACAGAAGAAGATGATCAGAATTCAGACGGCCACAGTTGGAAAGGGGCACGCCACAACTCCGGTGGAGATGTAGAGTCTTGTACTAATCCCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

372

Amino Acids

41.34

Weight (kDa)

6.37

Isoelectric Point (pI)

59.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HHO5_N	PF26575	2 - 68	1.5e-28	HHO5-like, N-terminal domain
Myb_DNA-binding	PF00249	229 - 280	9.9e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37180 AT4G37180 AT4G37180
fragaria_vesca	FvH4_1g15450 FvH4_1g15470 FvH4_1g15470 FvH4_1g15470 FvH4_1g15470
malus_domestica	MD02G1166700.v1.1 MD15G1279200.v1.1
prunus_persica	Prupe.7G138100_v2.0.a1 Prupe.7G138100_v2.0.a1
pyrus_communis	pycom02g13400 pycom15g24200
rosa_chinensis	RchiOBHm_Chr2g0104701
rosa_laevigata	RLG00000017352
rosa_multiflora	Rmu_ssc0000441.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138820
rosa_rugosa	Rorug02G0121700 Rorug02G0121800
rosa_samantha	Rh2AG172100 Rh2BG179700 Rh2CG177200 Rh2DG178400
rosa_wichuraiana	Rw0G008620 Rw2G013470 Rw2G013530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	562
Acc36I	ACCTGC	1 cut(s)	778
Acc65I	GGTACC	1 cut(s)	856
AccB1I	GGYRCC	2 cut(s)	535, 856
AciI	CCGC	2 cut(s)	210, 230
AclI	AACGTT	1 cut(s)	354
AclWI	GGATC	1 cut(s)	754
AcoI	YGGCCR	2 cut(s)	48, 1051
AcsI	RAATTY	1 cut(s)	1042
AfaI	GTAC	2 cut(s)	858, 1105
AfiI	CCNNNNNNNGG	3 cut(s)	473, 968, 973
AhdI	GACNNNNNGTC	1 cut(s)	845
AjiI	CACGTC	1 cut(s)	847
Alw21I	GWGCWC	2 cut(s)	326, 344
Alw26I	GTCTC	3 cut(s)	49, 803, 909
AlwI	GGATC	1 cut(s)	754
AoxI	GGCC	2 cut(s)	48, 1051
ApeKI	GCWGC	3 cut(s)	603, 658, 661
ApoI	RAATTY	1 cut(s)	1042
Asp718I	GGTACC	1 cut(s)	856
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	2 cut(s)	623, 959
AsuHPI	GGTGA	4 cut(s)	244, 690, 793, 887
AvaII	GGWCC	2 cut(s)	623, 959
BaeGI	GKGCMC	1 cut(s)	1072
BanI	GGYRCC	2 cut(s)	535, 856
BanII	GRGCYC	1 cut(s)	326
BarI	GAAGNNNNNNTAC	2 cut(s)	231, 263
BbsI	GAAGAC	1 cut(s)	522
Bbv12I	GWGCWC	2 cut(s)	326, 344
BbvCI	CCTCAGC	1 cut(s)	654
BbvI	GCAGC	3 cut(s)	615, 670, 673
BccI	CCATC	3 cut(s)	29, 634, 788
BceAI	ACGGC	3 cut(s)	35, 76, 1066
BclI	TGATCA	1 cut(s)	1036
BcoDI	GTCTC	3 cut(s)	49, 803, 909
BfaI	CTAG	1 cut(s)	609
BfoI	RGCGCY	1 cut(s)	66
BfuAI	ACCTGC	1 cut(s)	778
BisI	GCNGC	3 cut(s)	604, 659, 662
BlpI	GCTNAGC	1 cut(s)	330
BlsI	GCNGC	3 cut(s)	605, 660, 663
Bme18I	GGWCC	2 cut(s)	623, 959
BmeRI	GACNNNNNGTC	1 cut(s)	845
BmgBI	CACGTC	1 cut(s)	847
BmgT120I	GGNCC	2 cut(s)	623, 959
BmiI	GGNNCC	4 cut(s)	537, 858, 960, 961
BmsI	GCATC	3 cut(s)	163, 680, 715
BpiI	GAAGAC	1 cut(s)	522
BplI	GAGNNNNNCTC	2 cut(s)	313, 345
BpmI	CTGGAG	1 cut(s)	358
Bpu10I	CCTNAGC	1 cut(s)	654
Bpu1102I	GCTNAGC	1 cut(s)	330
BsaBI	GATNNNNATC	1 cut(s)	399
BsaI	GGTCTC	1 cut(s)	803
BsaJI	CCNNGG	1 cut(s)	967
BsaWI	WCCGGW	3 cut(s)	700, 1004, 1082
Bsc4I	CCNNNNNNNGG	3 cut(s)	473, 968, 973
Bse1I	ACTGG	1 cut(s)	882
Bse8I	GATNNNNATC	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	967
BseGI	GGATG	4 cut(s)	271, 324, 400, 900
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	3 cut(s)	473, 968, 973
BseMII	CTCAG	4 cut(s)	80, 344, 405, 668
BseNI	ACTGG	1 cut(s)	882
BseRI	GAGGAG	1 cut(s)	627
BseSI	GKGCMC	1 cut(s)	1072
BseX3I	CGGCCG	1 cut(s)	48
BseXI	GCAGC	3 cut(s)	615, 670, 673
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	50, 1053
BshNI	GGYRCC	2 cut(s)	535, 856
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	2 cut(s)	326, 344
BsiSI	CCGG	3 cut(s)	701, 1005, 1083
BslFI	GGGAC	1 cut(s)	945
BslI	CCNNNNNNNGG	3 cut(s)	473, 968, 973
BsmAI	GTCTC	3 cut(s)	49, 803, 909
BsmFI	GGGAC	1 cut(s)	945
BsnI	GGCC	2 cut(s)	50, 1053
Bso31I	GGTCTC	1 cut(s)	803
Bsp1286I	GDGCHC	3 cut(s)	326, 344, 1072
Bsp143I	GATC	6 cut(s)	123, 223, 400, 746, 904, 1036
Bsp1720I	GCTNAGC	1 cut(s)	330
BspACI	CCGC	2 cut(s)	210, 230
BspANI	GGCC	2 cut(s)	50, 1053
BspCNI	CTCAG	4 cut(s)	79, 343, 406, 667
BspLI	GGNNCC	4 cut(s)	537, 858, 960, 961
BspMI	ACCTGC	1 cut(s)	778
BspPI	GGATC	1 cut(s)	754
BspQI	GCTCTTC	1 cut(s)	305
BspT107I	GGYRCC	2 cut(s)	535, 856
BspTNI	GGTCTC	1 cut(s)	803
BsrI	ACTGG	1 cut(s)	882
BssECI	CCNNGG	1 cut(s)	967
BssMI	GATC	6 cut(s)	123, 223, 400, 746, 904, 1036
BssT1I	CCWWGG	1 cut(s)	967
Bst4CI	ACNGT	4 cut(s)	252, 911, 942, 1058
Bst6I	CTCTTC	3 cut(s)	81, 234, 305
BstC8I	GCNNGC	1 cut(s)	1072
BstDEI	CTNAG	5 cut(s)	66, 330, 414, 597, 654
BstEII	GGTNACC	1 cut(s)	696
BstF5I	GGATG	4 cut(s)	271, 324, 400, 900
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	6 cut(s)	126, 226, 403, 749, 907, 1039
BstMAI	GTCTC	3 cut(s)	49, 803, 909
BstMBI	GATC	6 cut(s)	123, 223, 400, 746, 904, 1036
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	4 cut(s)	321, 658, 869, 878
BstPI	GGTNACC	1 cut(s)	696
BstSLI	GKGCMC	1 cut(s)	1072
BstV1I	GCAGC	3 cut(s)	615, 670, 673
BstV2I	GAAGAC	1 cut(s)	522
BstZI	CGGCCG	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	50, 1053
BtgZI	GCGATG	2 cut(s)	695, 703
BtrI	CACGTC	1 cut(s)	847
BtsCI	GGATG	4 cut(s)	271, 324, 400, 900
BtsI	GCAGTG	1 cut(s)	212
BtsIMutI	CAGTG	3 cut(s)	212, 889, 907
BveI	ACCTGC	1 cut(s)	778
Cac8I	GCNNGC	1 cut(s)	1072
CfoI	GCGC	1 cut(s)	65
Cfr13I	GGNCC	2 cut(s)	623, 959
Csp6I	GTAC	2 cut(s)	857, 1104
CspCI	CAANNNNNGTGG	2 cut(s)	1066, 1101
CviAII	CATG	1 cut(s)	307
CviQI	GTAC	2 cut(s)	857, 1104
DdeI	CTNAG	5 cut(s)	66, 330, 414, 597, 654
DpnI	GATC	6 cut(s)	125, 225, 402, 748, 906, 1038
DpnII	GATC	6 cut(s)	123, 223, 400, 746, 904, 1036
DrdI	GACNNNNNNGTC	1 cut(s)	562
DriI	GACNNNNNGTC	1 cut(s)	845
DseDI	GACNNNNNNGTC	1 cut(s)	562
EaeI	YGGCCR	2 cut(s)	48, 1051
EagI	CGGCCG	1 cut(s)	48
Eam1104I	CTCTTC	3 cut(s)	81, 234, 305
Eam1105I	GACNNNNNGTC	1 cut(s)	845
EarI	CTCTTC	3 cut(s)	81, 234, 305
Ecl136II	GAGCTC	1 cut(s)	324
EclXI	CGGCCG	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	967
Eco24I	GRGCYC	1 cut(s)	326
Eco31I	GGTCTC	1 cut(s)	803
Eco47I	GGWCC	2 cut(s)	623, 959
Eco52I	CGGCCG	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	324
Eco91I	GGTNACC	1 cut(s)	696
EcoICRI	GAGCTC	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	959
EcoO65I	GGTNACC	1 cut(s)	696
EcoRI	GAATTC	1 cut(s)	1042
EcoT14I	CCWWGG	1 cut(s)	967
EcoT38I	GRGCYC	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	967
FaeI	CATG	1 cut(s)	310
FaiI	YATR	9 cut(s)	93, 158, 164, 248, 308, 483, 785, 892, 974
FaqI	GGGAC	1 cut(s)	945
FatI	CATG	1 cut(s)	306
FauI	CCCGC	1 cut(s)	203
FbaI	TGATCA	1 cut(s)	1036
Fnu4HI	GCNGC	3 cut(s)	604, 659, 662
FokI	GGATG	4 cut(s)	278, 331, 407, 907
FriOI	GRGCYC	1 cut(s)	326
Fsp4HI	GCNGC	3 cut(s)	604, 659, 662
FspBI	CTAG	1 cut(s)	609
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	3 cut(s)	604, 659, 662
GsuI	CTGGAG	1 cut(s)	358
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	50, 1053
HapII	CCGG	3 cut(s)	701, 1005, 1083
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	1 cut(s)	310
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	5 cut(s)	102, 375, 485, 556, 1097
HpaII	CCGG	3 cut(s)	701, 1005, 1083
HphI	GGTGA	4 cut(s)	244, 690, 793, 887
Hpy188I	TCNGA	8 cut(s)	28, 69, 289, 552, 568, 851, 1041, 1048
Hpy188III	TCNNGA	3 cut(s)	136, 337, 372
HpyAV	CCTTC	3 cut(s)	256, 269, 505
HpyCH4III	ACNGT	4 cut(s)	252, 911, 942, 1058
HpyCH4IV	ACGT	3 cut(s)	354, 563, 846
HpyCH4V	TGCA	5 cut(s)	205, 590, 728, 787, 829
HpyF10VI	GCNNNNNNNGC	4 cut(s)	321, 658, 869, 878
HpyF3I	CTNAG	5 cut(s)	66, 330, 414, 597, 654
HpySE526I	ACGT	3 cut(s)	354, 563, 846
Hsp92II	CATG	1 cut(s)	310
HspAI	GCGC	1 cut(s)	63
KflI	GGGWCCC	1 cut(s)	959
KpnI	GGTACC	1 cut(s)	860
Ksp22I	TGATCA	1 cut(s)	1036
Kzo9I	GATC	6 cut(s)	123, 223, 400, 746, 904, 1036
LguI	GCTCTTC	1 cut(s)	305
LmnI	GCTCC	3 cut(s)	142, 339, 703
Lsp1109I	GCAGC	3 cut(s)	615, 670, 673
LweI	GCATC	3 cut(s)	163, 680, 715
MaeI	CTAG	1 cut(s)	609
MaeII	ACGT	3 cut(s)	354, 563, 846
MaeIII	GTNAC	4 cut(s)	36, 302, 639, 696
MalI	GATC	6 cut(s)	125, 225, 402, 748, 906, 1038
MboI	GATC	6 cut(s)	123, 223, 400, 746, 904, 1036
MfeI	CAATTG	1 cut(s)	423
MhlI	GDGCHC	3 cut(s)	326, 344, 1072
MluCI	AATT	4 cut(s)	423, 478, 919, 1042
MlyI	GAGTC	5 cut(s)	96, 369, 494, 550, 1106
MmeI	TCCRAC	2 cut(s)	584, 1040
MseI	TTAA	2 cut(s)	54, 582
MspI	CCGG	3 cut(s)	701, 1005, 1083
MunI	CAATTG	1 cut(s)	423
MwoI	GCNNNNNNNGC	4 cut(s)	321, 658, 869, 878
NdeII	GATC	6 cut(s)	123, 223, 400, 746, 904, 1036
NlaIII	CATG	1 cut(s)	310
NlaIV	GGNNCC	4 cut(s)	537, 858, 960, 961
NmeAIII	GCCGAG	1 cut(s)	26
NmuCI	GTSAC	3 cut(s)	36, 302, 696
PciSI	GCTCTTC	1 cut(s)	305
PkrI	GCNGC	3 cut(s)	605, 660, 663
PleI	GAGTC	5 cut(s)	96, 369, 493, 550, 1105
PpsI	GAGTC	5 cut(s)	96, 369, 493, 550, 1105
PpuMI	RGGWCCY	1 cut(s)	959
Psp124BI	GAGCTC	1 cut(s)	326
Psp1406I	AACGTT	1 cut(s)	354
Psp5II	RGGWCCY	1 cut(s)	959
PspEI	GGTNACC	1 cut(s)	696
PspN4I	GGNNCC	4 cut(s)	537, 858, 960, 961
PspPI	GGNCC	2 cut(s)	623, 959
PspPPI	RGGWCCY	1 cut(s)	959
RsaI	GTAC	2 cut(s)	858, 1105
RsaNI	GTAC	2 cut(s)	857, 1104
SacI	GAGCTC	1 cut(s)	326
SapI	GCTCTTC	1 cut(s)	305
SaqAI	TTAA	2 cut(s)	54, 582
SatI	GCNGC	3 cut(s)	604, 659, 662
Sau3AI	GATC	6 cut(s)	123, 223, 400, 746, 904, 1036
Sau96I	GGNCC	2 cut(s)	623, 959
SchI	GAGTC	5 cut(s)	96, 369, 494, 550, 1106
SduI	GDGCHC	3 cut(s)	326, 344, 1072
SfaNI	GCATC	3 cut(s)	163, 680, 715
SinI	GGWCC	2 cut(s)	623, 959
Sse9I	AATT	4 cut(s)	423, 478, 919, 1042
SsiI	CCGC	2 cut(s)	210, 230
SspMI	CTAG	1 cut(s)	609
SstI	GAGCTC	1 cut(s)	326
StyI	CCWWGG	1 cut(s)	967
TaaI	ACNGT	4 cut(s)	252, 911, 942, 1058
TaiI	ACGT	3 cut(s)	357, 566, 849
TaqI	TCGA	2 cut(s)	105, 126
TaqII	GACCGA	1 cut(s)	393
TasI	AATT	4 cut(s)	423, 478, 919, 1042
TatI	WGTACW	1 cut(s)	1103
Tru1I	TTAA	2 cut(s)	54, 582
Tru9I	TTAA	2 cut(s)	54, 582
TscAI	CASTG	3 cut(s)	212, 889, 914
TseFI	GTSAC	3 cut(s)	36, 302, 696
TseI	GCWGC	3 cut(s)	603, 658, 661
Tsp45I	GTSAC	3 cut(s)	36, 302, 696
TspDTI	ATGAA	6 cut(s)	126, 235, 288, 323, 698, 911
TspRI	CASTG	3 cut(s)	212, 889, 914
VpaK11BI	GGWCC	2 cut(s)	623, 959
XapI	RAATTY	1 cut(s)	1042
XcmI	CCANNNNNNNNNTGG	2 cut(s)	908, 1082
XspI	CTAG	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.