Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006004

Physical Location & Seq

Genomic Coordinates Forward (+)

9921089 .. 9922775

Gene Structure 1687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g13400.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGAGCTGCTGAGCTTGGACTCCAGTCCTCTGTTCGTCCCGAAAACAATCACCGACTTTCTCGCCCAGCTCGCCGCAATTAAAGATGGCTCTCAGAGGTCTTCAGAGCTCGATGGGTACGTGAAGAGATTGGAAGATGAACTCAGAAAGATTGAAGTTTTCAAGCGGGAGCTTCCTCTCTGCATGCTTCTCTTGAAGGATGCGATTGAGCGGTTGAAGGAGGAAGGAATGCGGTGGAGGCGAATGGACGAGCGGCCGGTGGTGGAGGAGTTCATGCCGTTGAAGGGCAATTCTGAGGAGGACGGAGGGGTAGTTTCGGGAAAGGAGAATATTGACAAGAAGAACTGGATGAGCTCTGCTCAGCTGTGGAACACGAGCATCAACGTTTTCGATTACACCAAACACGACTCTGTTGAACTTAAACTGGGGAATGAGGCAGATGATCGGTCGGTGCCTGAGAACCCAATTGAGGTGAGTAATAACAGAGCCGTGGAGGGGGCATTACTGGCATTCAGGGGACAGAATGAGCTCTCTGGTTTTGCAAAACCATGTTTGAAGGAAGACAAGGAGATTTCTGAGGTTCCAAACCTTTGTCTTATGACTCCATTGATGTCTGAAGCACTGGCTGGTTATGCAAACGCAAACTCAAAGACCAGCAATGGCTGCAAAGGCGGCGGTTCGGGTTCTGGTGTGGCAGGACAAGTGAAATTACTGAACAAACCTCAGCCCCAGCCACAGCAGCAGCAGCAATCCTTGAGGAAACCAAGGCGGTGCTGGTCCCCGGAGCTCCACCGCCGCTTTGTTGATGCCCTTCAGCAGCTTGGAGGAACAGAAGCCACTCCTAAGCAGATAAGAGAGCTTATGCAGGTGGAGGGTCTCACCAATGATGAAGTTAAGAGCCATTTGCAGAAATACCGCCTTCACATCCGAAAGCTACCGCCTTCTGCTGCTGCCGGCCAAGGGAATGCCTTACTCATGTCCTTGGATCACAGTGGAGACCATTCTAAGGCAAACAACGTACAGTCTGGCTCCCCACAGGGTCCTCTCCTTGCGGGCGGGTATGCCAAAGGTCGATCCACAACTGGAGGCGAGTCAGGCAACAGCAGGGAAGCCGAAGAGGACGAGAAATCGGATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

380

Amino Acids

41.71

Weight (kDa)

5.85

Isoelectric Point (pI)

60.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37180 AT4G37180 AT4G37180
fragaria_vesca	FvH4_1g15450 FvH4_1g15470 FvH4_1g15470 FvH4_1g15470 FvH4_1g15470
malus_domestica	MD02G1166700.v1.1 MD15G1279200.v1.1
prunus_persica	Prupe.7G138100_v2.0.a1 Prupe.7G138100_v2.0.a1
pyrus_communis	pycom02g13400 pycom15g24200
rosa_chinensis	RchiOBHm_Chr2g0104701
rosa_laevigata	RLG00000017352
rosa_multiflora	Rmu_ssc0000441.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138820
rosa_rugosa	Rorug02G0121700 Rorug02G0121800
rosa_samantha	Rh2AG172100 Rh2BG179700 Rh2CG177200 Rh2DG178400
rosa_wichuraiana	Rw0G008620 Rw2G013470 Rw2G013530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	856
Acc36I	ACCTGC	1 cut(s)	856
AccB1I	GGYRCC	1 cut(s)	451
AccBSI	CCGCTC	2 cut(s)	211, 253
AclI	AACGTT	1 cut(s)	384
AclWI	GGATC	2 cut(s)	993, 1068
AcoI	YGGCCR	2 cut(s)	254, 955
AcuI	CTGAAG	3 cut(s)	87, 636, 797
AfaI	GTAC	2 cut(s)	119, 1020
AfiI	CCNNNNNNNGG	5 cut(s)	284, 469, 495, 960, 1006
AgsI	TTSAA	7 cut(s)	155, 163, 196, 217, 283, 416, 556
Alw21I	GWGCWC	4 cut(s)	111, 356, 531, 789
Alw26I	GTCTC	2 cut(s)	881, 990
AlwI	GGATC	2 cut(s)	993, 1068
AoxI	GGCC	2 cut(s)	254, 955
ApeKI	GCWGC	8 cut(s)	7, 663, 739, 742, 745, 817, 947, 950
AspS9I	GGNCC	2 cut(s)	777, 1040
AsuC2I	CCSGG	1 cut(s)	782
AsuHPI	GGTGA	3 cut(s)	43, 484, 871
AvaII	GGWCC	2 cut(s)	777, 1040
BanI	GGYRCC	1 cut(s)	451
BanII	GRGCYC	4 cut(s)	111, 356, 531, 789
BauI	CACGAG	1 cut(s)	373
BbsI	GAAGAC	2 cut(s)	93, 567
Bbv12I	GWGCWC	4 cut(s)	111, 356, 531, 789
BbvCI	CCTCAGC	1 cut(s)	723
BbvI	GCAGC	7 cut(s)	650, 751, 754, 757, 829, 934, 937
BccI	CCATC	3 cut(s)	80, 107, 1127
BceAI	ACGGC	2 cut(s)	262, 473
BcnI	CCSGG	1 cut(s)	782
BcoDI	GTCTC	2 cut(s)	881, 990
BfuAI	ACCTGC	1 cut(s)	856
BlpI	GCTNAGC	2 cut(s)	11, 360
Bme1390I	CCNGG	1 cut(s)	782
Bme18I	GGWCC	2 cut(s)	777, 1040
BmgT120I	GGNCC	2 cut(s)	777, 1040
BmiI	GGNNCC	5 cut(s)	453, 582, 779, 1030, 1041
BmrFI	CCNGG	1 cut(s)	782
BmrI	ACTGGG	1 cut(s)	434
BmsI	GCATC	3 cut(s)	190, 387, 796
BmuI	ACTGGG	1 cut(s)	434
BoxI	GACNNNNGTC	1 cut(s)	24
BpiI	GAAGAC	2 cut(s)	93, 567
BplI	GAGNNNNNCTC	2 cut(s)	343, 375
BpmI	CTGGAG	2 cut(s)	7, 1104
Bpu10I	CCTNAGC	2 cut(s)	723, 843
Bpu1102I	GCTNAGC	2 cut(s)	11, 360
BpuEI	CTTGAG	1 cut(s)	775
BpuMI	CCSGG	1 cut(s)	782
BsaAI	YACGTR	1 cut(s)	121
BsaI	GGTCTC	2 cut(s)	881, 990
BsaJI	CCNNGG	5 cut(s)	489, 764, 780, 958, 981
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	5 cut(s)	284, 469, 495, 960, 1006
Bse118I	RCCGGY	2 cut(s)	256, 953
Bse1I	ACTGG	6 cut(s)	24, 350, 429, 510, 627, 1087
Bse3DI	GCAATG	1 cut(s)	664
BseDI	CCNNGG	5 cut(s)	489, 764, 780, 958, 981
BseGI	GGATG	4 cut(s)	205, 354, 924, 1138
BseLI	CCNNNNNNNGG	5 cut(s)	284, 469, 495, 960, 1006
BseMI	GCAATG	1 cut(s)	664
BseMII	CTCAG	7 cut(s)	107, 157, 285, 374, 447, 567, 737
BseNI	ACTGG	6 cut(s)	24, 350, 429, 510, 627, 1087
BseRI	GAGGAG	2 cut(s)	281, 311
BseX3I	CGGCCG	1 cut(s)	254
BseXI	GCAGC	7 cut(s)	650, 751, 754, 757, 829, 934, 937
BseYI	CCCAGC	2 cut(s)	66, 729
Bsh1285I	CGRYCG	2 cut(s)	257, 449
BshFI	GGCC	2 cut(s)	256, 957
BshNI	GGYRCC	1 cut(s)	451
BsiEI	CGRYCG	2 cut(s)	257, 449
BsiHKAI	GWGCWC	4 cut(s)	111, 356, 531, 789
BsiSI	CCGG	3 cut(s)	257, 782, 954
BslFI	GGGAC	3 cut(s)	23, 531, 763
BslI	CCNNNNNNNGG	5 cut(s)	284, 469, 495, 960, 1006
BsmAI	GTCTC	2 cut(s)	881, 990
BsmFI	GGGAC	3 cut(s)	23, 531, 763
BsmI	GAATGC	3 cut(s)	234, 509, 970
BsnI	GGCC	2 cut(s)	256, 957
Bso31I	GGTCTC	2 cut(s)	881, 990
Bsp1286I	GDGCHC	4 cut(s)	111, 356, 531, 789
Bsp143I	GATC	3 cut(s)	442, 985, 1073
Bsp1720I	GCTNAGC	2 cut(s)	11, 360
BspANI	GGCC	2 cut(s)	256, 957
BspCNI	CTCAG	7 cut(s)	106, 156, 286, 373, 448, 568, 736
BspLI	GGNNCC	5 cut(s)	453, 582, 779, 1030, 1041
BspMI	ACCTGC	1 cut(s)	856
BspPI	GGATC	2 cut(s)	993, 1068
BspT107I	GGYRCC	1 cut(s)	451
BspTNI	GGTCTC	2 cut(s)	881, 990
BsrBI	CCGCTC	2 cut(s)	211, 253
BsrDI	GCAATG	1 cut(s)	664
BsrFI	RCCGGY	2 cut(s)	256, 953
BsrI	ACTGG	6 cut(s)	24, 350, 429, 510, 627, 1087
BssAI	RCCGGY	2 cut(s)	256, 953
BssECI	CCNNGG	5 cut(s)	489, 764, 780, 958, 981
BssMI	GATC	3 cut(s)	442, 985, 1073
BssSI	CACGAG	1 cut(s)	373
BssT1I	CCWWGG	3 cut(s)	764, 958, 981
Bst2BI	CACGAG	1 cut(s)	373
Bst4CI	ACNGT	2 cut(s)	992, 1023
Bst6I	CTCTTC	2 cut(s)	119, 1110
BstAPI	GCANNNNNTGC	1 cut(s)	663
BstBAI	YACGTR	1 cut(s)	121
BstC8I	GCNNGC	4 cut(s)	72, 185, 955, 1054
BstDSI	CCRYGG	1 cut(s)	489
BstF5I	GGATG	4 cut(s)	205, 354, 924, 1138
BstKTI	GATC	3 cut(s)	445, 988, 1076
BstMAI	GTCTC	2 cut(s)	881, 990
BstMBI	GATC	3 cut(s)	442, 985, 1073
BstMCI	CGRYCG	2 cut(s)	257, 449
BstNSI	RCATGY	1 cut(s)	187
BstPAI	GACNNNNGTC	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	780
BstV1I	GCAGC	7 cut(s)	650, 751, 754, 757, 829, 934, 937
BstV2I	GAAGAC	2 cut(s)	93, 567
BstZI	CGGCCG	1 cut(s)	254
BsuRI	GGCC	2 cut(s)	256, 957
BtgI	CCRYGG	1 cut(s)	489
BtsCI	GGATG	4 cut(s)	205, 354, 924, 1138
BtsIMutI	CAGTG	2 cut(s)	620, 997
BveI	ACCTGC	1 cut(s)	856
Cac8I	GCNNGC	4 cut(s)	72, 185, 955, 1054
Cfr10I	RCCGGY	2 cut(s)	256, 953
Cfr13I	GGNCC	2 cut(s)	777, 1040
Csp6I	GTAC	2 cut(s)	118, 1019
CviAII	CATG	4 cut(s)	184, 274, 549, 976
CviQI	GTAC	2 cut(s)	118, 1019
DpnI	GATC	3 cut(s)	444, 987, 1075
DpnII	GATC	3 cut(s)	442, 985, 1073
EaeI	YGGCCR	2 cut(s)	254, 955
EagI	CGGCCG	1 cut(s)	254
Eam1104I	CTCTTC	2 cut(s)	119, 1110
EarI	CTCTTC	2 cut(s)	119, 1110
Ecl136II	GAGCTC	4 cut(s)	109, 354, 529, 787
EclXI	CGGCCG	1 cut(s)	254
Eco130I	CCWWGG	3 cut(s)	764, 958, 981
Eco24I	GRGCYC	4 cut(s)	111, 356, 531, 789
Eco31I	GGTCTC	2 cut(s)	881, 990
Eco47I	GGWCC	2 cut(s)	777, 1040
Eco52I	CGGCCG	1 cut(s)	254
Eco53kI	GAGCTC	4 cut(s)	109, 354, 529, 787
Eco57I	CTGAAG	3 cut(s)	87, 636, 797
EcoICRI	GAGCTC	4 cut(s)	109, 354, 529, 787
EcoO109I	RGGNCCY	1 cut(s)	1040
EcoT14I	CCWWGG	3 cut(s)	764, 958, 981
EcoT38I	GRGCYC	4 cut(s)	111, 356, 531, 789
ErhI	CCWWGG	3 cut(s)	764, 958, 981
FaeI	CATG	4 cut(s)	187, 277, 552, 979
FaiI	YATR	8 cut(s)	185, 275, 550, 599, 633, 863, 977, 1062
FaqI	GGGAC	3 cut(s)	23, 531, 763
FatI	CATG	4 cut(s)	183, 273, 548, 975
FauI	CCCGC	3 cut(s)	159, 1045, 1049
FokI	GGATG	3 cut(s)	212, 361, 911
FriOI	GRGCYC	4 cut(s)	111, 356, 531, 789
GsaI	CCCAGC	2 cut(s)	70, 733
GsuI	CTGGAG	2 cut(s)	7, 1104
HaeIII	GGCC	2 cut(s)	256, 957
HapII	CCGG	3 cut(s)	257, 782, 954
Hin1II	CATG	4 cut(s)	187, 277, 552, 979
HinfI	GANTC	4 cut(s)	20, 407, 601, 1091
HpaII	CCGG	3 cut(s)	257, 782, 954
HphI	GGTGA	3 cut(s)	43, 484, 871
Hpy188I	TCNGA	8 cut(s)	96, 106, 146, 295, 577, 616, 929, 1132
Hpy188III	TCNNGA	3 cut(s)	40, 193, 318
HpyAV	CCTTC	8 cut(s)	190, 211, 218, 277, 550, 821, 929, 951
HpyCH4III	ACNGT	2 cut(s)	992, 1023
HpyCH4IV	ACGT	3 cut(s)	120, 384, 1017
HpyCH4V	TGCA	6 cut(s)	183, 542, 635, 666, 865, 907
HpySE526I	ACGT	3 cut(s)	120, 384, 1017
Hsp92II	CATG	4 cut(s)	187, 277, 552, 979
KroI	GCCGGC	1 cut(s)	953
KroNI	GCCGGC	1 cut(s)	955
Kzo9I	GATC	3 cut(s)	442, 985, 1073
LmnI	GCTCC	5 cut(s)	4, 169, 784, 792, 1034
Lsp1109I	GCAGC	7 cut(s)	650, 751, 754, 757, 829, 934, 937
LweI	GCATC	3 cut(s)	190, 387, 796
MaeII	ACGT	3 cut(s)	120, 384, 1017
MalI	GATC	3 cut(s)	444, 987, 1075
MbiI	CCGCTC	2 cut(s)	211, 253
MboI	GATC	3 cut(s)	442, 985, 1073
MboII	GAAGA	6 cut(s)	93, 136, 146, 352, 572, 1127
MfeI	CAATTG	1 cut(s)	465
MhlI	GDGCHC	4 cut(s)	111, 356, 531, 789
MluCI	AATT	4 cut(s)	78, 289, 465, 707
MlyI	GAGTC	4 cut(s)	14, 401, 595, 1100
MroNI	GCCGGC	1 cut(s)	953
MseI	TTAA	3 cut(s)	81, 420, 894
MspA1I	CMGCKG	1 cut(s)	364
MspI	CCGG	3 cut(s)	257, 782, 954
MspR9I	CCNGG	1 cut(s)	782
MunI	CAATTG	1 cut(s)	465
Mva1269I	GAATGC	3 cut(s)	234, 509, 970
NaeI	GCCGGC	1 cut(s)	955
NciI	CCSGG	1 cut(s)	782
NdeII	GATC	3 cut(s)	442, 985, 1073
NgoMIV	GCCGGC	1 cut(s)	953
NlaIII	CATG	4 cut(s)	187, 277, 552, 979
NlaIV	GGNNCC	5 cut(s)	453, 582, 779, 1030, 1041
NspI	RCATGY	1 cut(s)	187
PaeI	GCATGC	1 cut(s)	187
PaqCI	CACCTGC	1 cut(s)	856
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PctI	GAATGC	3 cut(s)	234, 509, 970
PdiI	GCCGGC	1 cut(s)	955
PleI	GAGTC	4 cut(s)	14, 401, 595, 1099
PpsI	GAGTC	4 cut(s)	14, 401, 595, 1099
Ppu21I	YACGTR	1 cut(s)	121
PpuMI	RGGWCCY	1 cut(s)	1040
PshAI	GACNNNNGTC	1 cut(s)	24
Psp124BI	GAGCTC	4 cut(s)	111, 356, 531, 789
Psp1406I	AACGTT	1 cut(s)	384
Psp5II	RGGWCCY	1 cut(s)	1040
PspFI	CCCAGC	2 cut(s)	66, 729
PspN4I	GGNNCC	5 cut(s)	453, 582, 779, 1030, 1041
PspPI	GGNCC	2 cut(s)	777, 1040
PspPPI	RGGWCCY	1 cut(s)	1040
PvuII	CAGCTG	1 cut(s)	364
RsaI	GTAC	2 cut(s)	119, 1020
RsaNI	GTAC	2 cut(s)	118, 1019
SacI	GAGCTC	4 cut(s)	111, 356, 531, 789
SaqAI	TTAA	3 cut(s)	81, 420, 894
Sau3AI	GATC	3 cut(s)	442, 985, 1073
Sau96I	GGNCC	2 cut(s)	777, 1040
SchI	GAGTC	4 cut(s)	14, 401, 595, 1100
ScrFI	CCNGG	1 cut(s)	782
SduI	GDGCHC	4 cut(s)	111, 356, 531, 789
SfaNI	GCATC	3 cut(s)	190, 387, 796
SinI	GGWCC	2 cut(s)	777, 1040
SmlI	CTYRAG	1 cut(s)	754
SmoI	CTYRAG	1 cut(s)	754
SphI	GCATGC	1 cut(s)	187
Sse9I	AATT	4 cut(s)	78, 289, 465, 707
SspI	AATATT	1 cut(s)	331
SstI	GAGCTC	4 cut(s)	111, 356, 531, 789
StyD4I	CCNGG	1 cut(s)	780
StyI	CCWWGG	3 cut(s)	764, 958, 981
TaaI	ACNGT	2 cut(s)	992, 1023
TaiI	ACGT	3 cut(s)	123, 387, 1020
TaqI	TCGA	3 cut(s)	111, 390, 1072
TaqII	GACCGA	1 cut(s)	435
TasI	AATT	4 cut(s)	78, 289, 465, 707
TauI	GCSGC	4 cut(s)	77, 256, 675, 798
Tru1I	TTAA	3 cut(s)	81, 420, 894
Tru9I	TTAA	3 cut(s)	81, 420, 894
TscAI	CASTG	2 cut(s)	627, 997
TseI	GCWGC	8 cut(s)	7, 663, 739, 742, 745, 817, 947, 950
TspDTI	ATGAA	3 cut(s)	153, 262, 903
TspGWI	ACGGA	1 cut(s)	318
TspRI	CASTG	2 cut(s)	627, 997
VpaK11BI	GGWCC	2 cut(s)	777, 1040
XceI	RCATGY	1 cut(s)	187
XcmI	CCANNNNNNNNNTGG	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.