Rw2G013530
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0006004
Physical Location & Seq
Forward (+)
14576016 .. 14578343
2328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G013530.1

Sequence Viewer

Length: 1188 bp
ATGCTAGAGACCCCAAAACAGAGAGAGATAGAGAACAAAACCAACATGGAGCTCAGCTTAGATTCCAACATGGTCTTCGTCCCCAAGACCATCTCCGAGTTTCTGTCACAAGTCTCGGCCGTTAAAGACGGCGCTCAGAGGTCGTTGAAGCTTGAAGAGTATGTGAAAAGACTCGAAGATGAAATGAGGAAGATCGAGGTTTTCAAGAGGGAGCTTCCTCTGTGTATGGTTATATTGAAAGATGCGATTGAGAGATTGAAAGAGGAAGTAATGCAGTGCGGGAAAGTGGAAGATCGGGCGGTGATTGAAGAGTTCATACCGTTGAAGAAGAAGGATGAGAATGAAGGGGTAGTTTCGGAAAAGGAGAATAGTGACATGAAGAGCTGGATGAGCTCTGCTCAGCTCTGGAGCACTAATATCAACGTTGATTACAGCAAATCAGGACTCAAAATGAGAAATGAGGATGATGATCGGTCTGTGCCTGAGAACCCAATTGAGATAAGTAATAAGAGAAGCAGGGGAGGGGCGTTTGTGCCATTCAAGGGAAATTATGAGTCTGGTTTTGCGAGGACTTGTGTGAAGGAAGACAAGGAGGTTTCACAGGTGCCAAGCCTTTCTCTGATGACTCCAACGTCTGAACTTGGTGGCTTTAATAATGCAAACTCTAAGAGCAGCACTAGAGGAGGTTCTGGTCCATCTTTGGCGAAGTTACAGATTGAGCATCAGCAGCAGCAACAATGTTTTAGGAAACAAAGGCGATGCTGGTCACCGGAGCTTCATCGCCGATTTGTTGATGCACTTCAACAGCTTGGGGGATCACAAGTAGCTACTCCTAAACAGATTAGAGAGCTTATGCAGGTAGATGGTCTCACCAATGATGAAGTGAAAAGCCATTTGCAGAAATACAGACTTCACGTCCGAAAGGTACCAGCTTCTTCTGCTGGTGAAGCCAGTGGTTTATGGATGAACCAAGATCACTGTGGAGACAATTCAAAGGCAAATACTTCACAGTCTGGTTCTCCACAGGGTCCCCTCCTTGGTATGGAGTTTGCCAAAGGTGGTCAATCTACAACCGGAGGCAACAGCACAGAAACAGAAGAAGATGATCAGAATTCAGACGGCCACAGTTGGAAAGGGGCACGCCACAACTCCGGTGGAGATGTAGAGTCTTGTACTAATCCCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

395

Amino Acids

44.12

Weight (kDa)

5.94

Isoelectric Point (pI)

58.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 19 - 91 6.9e-30 HHO5-like, N-terminal domain
Myb_DNA-binding PF00249 252 - 303 1.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 631
Acc36I ACCTGC 1 cut(s) 847
Acc65I GGTACC 1 cut(s) 925
AccB1I GGYRCC 2 cut(s) 604, 925
AciI CCGC 2 cut(s) 279, 299
AclI AACGTT 1 cut(s) 423
AclWI GGATC 1 cut(s) 823
AcoI YGGCCR 2 cut(s) 117, 1120
AcsI RAATTY 1 cut(s) 1111
AfaI GTAC 2 cut(s) 927, 1174
AfiI CCNNNNNNNGG 3 cut(s) 542, 1037, 1042
AhdI GACNNNNNGTC 1 cut(s) 914
AjiI CACGTC 1 cut(s) 916
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
Alw21I GWGCWC 3 cut(s) 54, 395, 413
Alw26I GTCTC 4 cut(s) 2, 118, 872, 978
AlwI GGATC 1 cut(s) 823
AoxI GGCC 2 cut(s) 117, 1120
ApeKI GCWGC 3 cut(s) 672, 727, 730
ApoI RAATTY 1 cut(s) 1111
Asp718I GGTACC 1 cut(s) 925
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 692, 1028
AsuHPI GGTGA 4 cut(s) 313, 759, 862, 956
AvaII GGWCC 2 cut(s) 692, 1028
BaeGI GKGCMC 1 cut(s) 1141
BanI GGYRCC 2 cut(s) 604, 925
BanII GRGCYC 2 cut(s) 54, 395
BarI GAAGNNNNNNTAC 2 cut(s) 300, 332
BbsI GAAGAC 2 cut(s) 67, 591
Bbv12I GWGCWC 3 cut(s) 54, 395, 413
BbvI GCAGC 3 cut(s) 684, 739, 742
BccI CCATC 3 cut(s) 98, 703, 857
BceAI ACGGC 3 cut(s) 104, 145, 1135
BclI TGATCA 1 cut(s) 1105
BcoDI GTCTC 4 cut(s) 2, 118, 872, 978
BfaI CTAG 2 cut(s) 5, 678
BfoI RGCGCY 1 cut(s) 135
BfuAI ACCTGC 1 cut(s) 847
BisI GCNGC 3 cut(s) 673, 728, 731
BlpI GCTNAGC 2 cut(s) 53, 399
BlsI GCNGC 3 cut(s) 674, 729, 732
Bme18I GGWCC 2 cut(s) 692, 1028
BmeRI GACNNNNNGTC 1 cut(s) 914
BmgBI CACGTC 1 cut(s) 916
BmgT120I GGNCC 2 cut(s) 692, 1028
BmiI GGNNCC 4 cut(s) 606, 927, 1029, 1030
BmsI GCATC 4 cut(s) 232, 730, 749, 784
BpiI GAAGAC 2 cut(s) 67, 591
BplI GAGNNNNNCTC 2 cut(s) 382, 414
BpmI CTGGAG 1 cut(s) 427
Bpu1102I GCTNAGC 2 cut(s) 53, 399
BsaBI GATNNNNATC 1 cut(s) 468
BsaI GGTCTC 2 cut(s) 2, 872
BsaJI CCNNGG 1 cut(s) 1036
BsaWI WCCGGW 3 cut(s) 769, 1073, 1151
Bsc4I CCNNNNNNNGG 3 cut(s) 542, 1037, 1042
Bse1I ACTGG 1 cut(s) 951
Bse8I GATNNNNATC 1 cut(s) 468
BseDI CCNNGG 1 cut(s) 1036
BseGI GGATG 4 cut(s) 340, 393, 469, 969
BseJI GATNNNNATC 1 cut(s) 468
BseLI CCNNNNNNNGG 3 cut(s) 542, 1037, 1042
BseMII CTCAG 4 cut(s) 67, 149, 413, 474
BseNI ACTGG 1 cut(s) 951
BseRI GAGGAG 1 cut(s) 696
BseSI GKGCMC 1 cut(s) 1141
BseX3I CGGCCG 1 cut(s) 117
BseXI GCAGC 3 cut(s) 684, 739, 742
Bsh1285I CGRYCG 1 cut(s) 120
BshFI GGCC 2 cut(s) 119, 1122
BshNI GGYRCC 2 cut(s) 604, 925
BsiEI CGRYCG 1 cut(s) 120
BsiHKAI GWGCWC 3 cut(s) 54, 395, 413
BsiSI CCGG 3 cut(s) 770, 1074, 1152
BslFI GGGAC 2 cut(s) 65, 1014
BslI CCNNNNNNNGG 3 cut(s) 542, 1037, 1042
BsmAI GTCTC 4 cut(s) 2, 118, 872, 978
BsmFI GGGAC 2 cut(s) 65, 1014
BsnI GGCC 2 cut(s) 119, 1122
Bso31I GGTCTC 2 cut(s) 2, 872
Bsp1286I GDGCHC 4 cut(s) 54, 395, 413, 1141
Bsp143I GATC 6 cut(s) 192, 292, 469, 815, 973, 1105
Bsp1720I GCTNAGC 2 cut(s) 53, 399
BspACI CCGC 2 cut(s) 279, 299
BspANI GGCC 2 cut(s) 119, 1122
BspCNI CTCAG 4 cut(s) 66, 148, 412, 475
BspLI GGNNCC 4 cut(s) 606, 927, 1029, 1030
BspMI ACCTGC 1 cut(s) 847
BspPI GGATC 1 cut(s) 823
BspQI GCTCTTC 1 cut(s) 374
BspT107I GGYRCC 2 cut(s) 604, 925
BspTNI GGTCTC 2 cut(s) 2, 872
BsrI ACTGG 1 cut(s) 951
BssECI CCNNGG 1 cut(s) 1036
BssMI GATC 6 cut(s) 192, 292, 469, 815, 973, 1105
BssT1I CCWWGG 1 cut(s) 1036
Bst4CI ACNGT 4 cut(s) 321, 980, 1011, 1127
Bst6I CTCTTC 3 cut(s) 150, 303, 374
BstC8I GCNNGC 1 cut(s) 1141
BstDEI CTNAG 6 cut(s) 53, 58, 135, 399, 483, 666
BstEII GGTNACC 1 cut(s) 765
BstF5I GGATG 4 cut(s) 340, 393, 469, 969
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 6 cut(s) 195, 295, 472, 818, 976, 1108
BstMAI GTCTC 4 cut(s) 2, 118, 872, 978
BstMBI GATC 6 cut(s) 192, 292, 469, 815, 973, 1105
BstMCI CGRYCG 1 cut(s) 120
BstMWI GCNNNNNNNGC 4 cut(s) 390, 727, 938, 947
BstPI GGTNACC 1 cut(s) 765
BstSLI GKGCMC 1 cut(s) 1141
BstV1I GCAGC 3 cut(s) 684, 739, 742
BstV2I GAAGAC 2 cut(s) 67, 591
BstZI CGGCCG 1 cut(s) 117
BsuRI GGCC 2 cut(s) 119, 1122
BtgZI GCGATG 2 cut(s) 764, 772
BtrI CACGTC 1 cut(s) 916
BtsCI GGATG 4 cut(s) 340, 393, 469, 969
BtsI GCAGTG 1 cut(s) 281
BtsIMutI CAGTG 3 cut(s) 281, 958, 976
BveI ACCTGC 1 cut(s) 847
Cac8I GCNNGC 1 cut(s) 1141
CfoI GCGC 1 cut(s) 134
Cfr13I GGNCC 2 cut(s) 692, 1028
Csp6I GTAC 2 cut(s) 926, 1173
CspCI CAANNNNNGTGG 2 cut(s) 1135, 1170
CviAII CATG 3 cut(s) 46, 70, 376
CviQI GTAC 2 cut(s) 926, 1173
DdeI CTNAG 6 cut(s) 53, 58, 135, 399, 483, 666
DpnI GATC 6 cut(s) 194, 294, 471, 817, 975, 1107
DpnII GATC 6 cut(s) 192, 292, 469, 815, 973, 1105
DrdI GACNNNNNNGTC 1 cut(s) 631
DriI GACNNNNNGTC 1 cut(s) 914
DseDI GACNNNNNNGTC 1 cut(s) 631
EaeI YGGCCR 2 cut(s) 117, 1120
EagI CGGCCG 1 cut(s) 117
Eam1104I CTCTTC 3 cut(s) 150, 303, 374
Eam1105I GACNNNNNGTC 1 cut(s) 914
EarI CTCTTC 3 cut(s) 150, 303, 374
Ecl136II GAGCTC 2 cut(s) 52, 393
EclXI CGGCCG 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 1036
Eco24I GRGCYC 2 cut(s) 54, 395
Eco31I GGTCTC 2 cut(s) 2, 872
Eco47I GGWCC 2 cut(s) 692, 1028
Eco52I CGGCCG 1 cut(s) 117
Eco53kI GAGCTC 2 cut(s) 52, 393
Eco91I GGTNACC 1 cut(s) 765
EcoICRI GAGCTC 2 cut(s) 52, 393
EcoO109I RGGNCCY 1 cut(s) 1028
EcoO65I GGTNACC 1 cut(s) 765
EcoRI GAATTC 1 cut(s) 1111
EcoT14I CCWWGG 1 cut(s) 1036
EcoT38I GRGCYC 2 cut(s) 54, 395
ErhI CCWWGG 1 cut(s) 1036
FaeI CATG 3 cut(s) 49, 73, 379
FaqI GGGAC 2 cut(s) 65, 1014
FatI CATG 3 cut(s) 45, 69, 375
FauI CCCGC 1 cut(s) 272
FbaI TGATCA 1 cut(s) 1105
Fnu4HI GCNGC 3 cut(s) 673, 728, 731
FokI GGATG 4 cut(s) 347, 400, 476, 976
FriOI GRGCYC 2 cut(s) 54, 395
Fsp4HI GCNGC 3 cut(s) 673, 728, 731
FspBI CTAG 2 cut(s) 5, 678
GlaI GCGC 1 cut(s) 133
GluI GCNGC 3 cut(s) 673, 728, 731
GsuI CTGGAG 1 cut(s) 427
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 2 cut(s) 119, 1122
HapII CCGG 3 cut(s) 770, 1074, 1152
HhaI GCGC 1 cut(s) 134
Hin1II CATG 3 cut(s) 49, 73, 379
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 6 cut(s) 62, 171, 444, 554, 625, 1166
HpaII CCGG 3 cut(s) 770, 1074, 1152
HphI GGTGA 4 cut(s) 313, 759, 862, 956
Hpy188I TCNGA 8 cut(s) 97, 138, 358, 621, 637, 920, 1110, 1117
Hpy188III TCNNGA 3 cut(s) 205, 406, 441
HpyAV CCTTC 3 cut(s) 325, 338, 574
HpyCH4III ACNGT 4 cut(s) 321, 980, 1011, 1127
HpyCH4IV ACGT 3 cut(s) 423, 632, 915
HpyCH4V TGCA 5 cut(s) 274, 659, 797, 856, 898
HpyF10VI GCNNNNNNNGC 4 cut(s) 390, 727, 938, 947
HpyF3I CTNAG 6 cut(s) 53, 58, 135, 399, 483, 666
HpySE526I ACGT 3 cut(s) 423, 632, 915
Hsp92II CATG 3 cut(s) 49, 73, 379
HspAI GCGC 1 cut(s) 132
KflI GGGWCCC 1 cut(s) 1028
KpnI GGTACC 1 cut(s) 929
Ksp22I TGATCA 1 cut(s) 1105
Kzo9I GATC 6 cut(s) 192, 292, 469, 815, 973, 1105
LguI GCTCTTC 1 cut(s) 374
LmnI GCTCC 4 cut(s) 49, 211, 408, 772
Lsp1109I GCAGC 3 cut(s) 684, 739, 742
LweI GCATC 4 cut(s) 232, 730, 749, 784
MaeI CTAG 2 cut(s) 5, 678
MaeII ACGT 3 cut(s) 423, 632, 915
MaeIII GTNAC 4 cut(s) 105, 371, 708, 765
MalI GATC 6 cut(s) 194, 294, 471, 817, 975, 1107
MboI GATC 6 cut(s) 192, 292, 469, 815, 973, 1105
MfeI CAATTG 1 cut(s) 492
MhlI GDGCHC 4 cut(s) 54, 395, 413, 1141
MluCI AATT 4 cut(s) 492, 547, 988, 1111
MlyI GAGTC 5 cut(s) 165, 438, 563, 619, 1175
MmeI TCCRAC 3 cut(s) 90, 653, 1109
MseI TTAA 2 cut(s) 123, 651
MspI CCGG 3 cut(s) 770, 1074, 1152
MunI CAATTG 1 cut(s) 492
MwoI GCNNNNNNNGC 4 cut(s) 390, 727, 938, 947
NdeII GATC 6 cut(s) 192, 292, 469, 815, 973, 1105
NlaIII CATG 3 cut(s) 49, 73, 379
NlaIV GGNNCC 4 cut(s) 606, 927, 1029, 1030
NmeAIII GCCGAG 1 cut(s) 95
NmuCI GTSAC 3 cut(s) 105, 371, 765
PciSI GCTCTTC 1 cut(s) 374
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 3 cut(s) 674, 729, 732
PleI GAGTC 5 cut(s) 165, 438, 562, 619, 1174
PpsI GAGTC 5 cut(s) 165, 438, 562, 619, 1174
PpuMI RGGWCCY 1 cut(s) 1028
Psp124BI GAGCTC 2 cut(s) 54, 395
Psp1406I AACGTT 1 cut(s) 423
Psp5II RGGWCCY 1 cut(s) 1028
PspEI GGTNACC 1 cut(s) 765
PspN4I GGNNCC 4 cut(s) 606, 927, 1029, 1030
PspPI GGNCC 2 cut(s) 692, 1028
PspPPI RGGWCCY 1 cut(s) 1028
RsaI GTAC 2 cut(s) 927, 1174
RsaNI GTAC 2 cut(s) 926, 1173
SacI GAGCTC 2 cut(s) 54, 395
SapI GCTCTTC 1 cut(s) 374
SaqAI TTAA 2 cut(s) 123, 651
SatI GCNGC 3 cut(s) 673, 728, 731
Sau3AI GATC 6 cut(s) 192, 292, 469, 815, 973, 1105
Sau96I GGNCC 2 cut(s) 692, 1028
SchI GAGTC 5 cut(s) 165, 438, 563, 619, 1175
SduI GDGCHC 4 cut(s) 54, 395, 413, 1141
SfaNI GCATC 4 cut(s) 232, 730, 749, 784
SinI GGWCC 2 cut(s) 692, 1028
Sse9I AATT 4 cut(s) 492, 547, 988, 1111
SsiI CCGC 2 cut(s) 279, 299
SspMI CTAG 2 cut(s) 5, 678
SstI GAGCTC 2 cut(s) 54, 395
StyI CCWWGG 1 cut(s) 1036
TaaI ACNGT 4 cut(s) 321, 980, 1011, 1127
TaiI ACGT 3 cut(s) 426, 635, 918
TaqI TCGA 2 cut(s) 174, 195
TaqII GACCGA 1 cut(s) 462
TasI AATT 4 cut(s) 492, 547, 988, 1111
TatI WGTACW 1 cut(s) 1172
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 2 cut(s) 123, 651
Tru9I TTAA 2 cut(s) 123, 651
TscAI CASTG 3 cut(s) 281, 958, 983
TseFI GTSAC 3 cut(s) 105, 371, 765
TseI GCWGC 3 cut(s) 672, 727, 730
Tsp45I GTSAC 3 cut(s) 105, 371, 765
TspDTI ATGAA 7 cut(s) 195, 304, 357, 392, 767, 894, 980
TspRI CASTG 3 cut(s) 281, 958, 983
VpaK11BI GGWCC 2 cut(s) 692, 1028
XapI RAATTY 1 cut(s) 1111
XcmI CCANNNNNNNNNTGG 2 cut(s) 977, 1151
XspI CTAG 2 cut(s) 5, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.