AT4G38320

heptahelical

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001650
Physical Location & Seq
Forward (+)
17948692 .. 17950522
1831 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38320.1

Sequence Viewer

Length: 1125 bp
ATGGGTGATGAGGCAGAGATCAAGGAACATTTAAAGCCACAAGCTTCATCTGAAACAATAGACAAGAAACATAATGTGAAAGGGAAGAGGTTATGGCAGAAAGTCAAGTATCAATTGGTGGAGTTTCATTCATTGCCTGCTTATTTAAGAGACAATGAGTACATCATTGGTCATTACCGATCCGAATGGCCGATCAAACAGATTCTTCTCAGCATCTTTACCATTCATAATGAGACTTTGAATGTTTGGACGCATTTGATTGGGTTTTTCCTGTTTTTGGCACTCACTATATACACTGCAACGAAAGTACCGAGTGTCGTGGATCTTCATTCGCTTCAACACCGTTTACCCGATTTGTTGAGGAAAACAGATCTCCACAAACTTCATTCTGAGCTCATGTCTCGCCTTCCTTCTAGTCCATCTAGTTGGCATGTGATGGACCTTCTTTATAACTGTTTGCCTGAAAGATTTTCTCATGGCAACTACACTGACATGTGTGTTCTGCATTCTGTGAGGGAAGATCTTGCAAACTTGATAGCTCCTTTGATCTTCAGGCCAATTACTCGATGGCCGTTTTATGCATTTCTAGGTGGTGCTATATTCTGTCTATTAGCAAGCAGCACGTGCCACCTCCTCTCATGTCACTCCGAGCGAGTCTCCTACATAATGCTTAGGCTTGATTACGCCGGCATCGCAGCTCTAATAGCGACTTCCTTCTACCCTCCGGTTTATTACTCCTTCATGTGTGATCCTTTCTTCTGCAACCTCTACTTAGGATTCATAACCATCTTAGGAATCGCCACTGTGCTTGTTTCTCTCCTCCCGGTTTTCCAAAGCCTGGAGTTTCGGGTGGTGAGGGCGTCTCTGTTCTTTGGAATGGGATTCTCTGGCTTAGCTCCGATTCTTCACAAGCTGATCATCTTTTGGGACCAACCTGAAGCCCTTCACATGACAGGTTATGAGATTTTGATGGGTTTGCTTTATGGGTTAGGAGCTGTGGTTTATGCAACTAGGATCCCAGAGAGATGGATGCCGGGTAAATTCGATATAGCAGGACATAGCCATCAGTTGTTTCATGTTCTGGTTGTTGCTGGTGCGTTAACGCACTATAGAGCTGGGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0010033 GO:0034285 GO:0042221 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932
Pfam Domains
Protein Families
HlyIII

Protein Analysis

374

Amino Acids

42.79

Weight (kDa)

8.12

Isoelectric Point (pI)

49.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HlyIII PF03006 73 - 370 1.5e-61 Haemolysin-III related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 450
AccB7I CCANNNNNTGG 1 cut(s) 838
AclWI GGATC 5 cut(s) 174, 330, 743, 1009, 1022
AcoI YGGCCR 2 cut(s) 188, 569
AcsI RAATTY 1 cut(s) 1040
AcuI CTGAAG 2 cut(s) 535, 957
AcvI CACGTG 1 cut(s) 624
AcyI GRCGYC 1 cut(s) 860
AfaI GTAC 2 cut(s) 161, 309
AfiI CCNNNNNNNGG 2 cut(s) 277, 838
AflIII ACRYGT 1 cut(s) 492
AgsI TTSAA 2 cut(s) 241, 338
AjnI CCWGG 1 cut(s) 837
AluBI AGCT 8 cut(s) 44, 394, 539, 698, 896, 913, 995, 1115
AluI AGCT 8 cut(s) 44, 394, 539, 698, 896, 913, 995, 1115
Alw21I GWGCWC 1 cut(s) 396
Alw26I GTCTC 5 cut(s) 144, 227, 405, 661, 867
AlwI GGATC 5 cut(s) 174, 330, 743, 1009, 1022
AoxI GGCC 3 cut(s) 188, 554, 569
ApeKI GCWGC 2 cut(s) 618, 695
ApoI RAATTY 1 cut(s) 1040
Asp700I GAANNNNTTC 1 cut(s) 942
AspS9I GGNCC 2 cut(s) 439, 928
AsuC2I CCSGG 2 cut(s) 824, 1035
AsuHPI GGTGA 2 cut(s) 17, 865
AvaII GGWCC 2 cut(s) 439, 928
BaeI ACNNNNGTAYC 2 cut(s) 291, 324
BamHI GGATCC 1 cut(s) 1014
BanII GRGCYC 1 cut(s) 396
BbrPI CACGTG 1 cut(s) 624
Bbv12I GWGCWC 1 cut(s) 396
BbvI GCAGC 2 cut(s) 630, 707
BccI CCATC 7 cut(s) 427, 430, 561, 794, 964, 1020, 1071
BceAI ACGGC 1 cut(s) 556
BciT130I CCWGG 1 cut(s) 839
BclI TGATCA 1 cut(s) 915
BcnI CCSGG 2 cut(s) 824, 1035
BcoDI GTCTC 5 cut(s) 144, 227, 405, 661, 867
BfaI CTAG 4 cut(s) 414, 423, 587, 1011
BfmI CTRYAG 1 cut(s) 1108
BglII AGATCT 2 cut(s) 370, 520
BisI GCNGC 2 cut(s) 619, 696
BlpI GCTNAGC 1 cut(s) 892
BlsI GCNGC 2 cut(s) 620, 697
Bme1390I CCNGG 3 cut(s) 824, 839, 1035
Bme18I GGWCC 2 cut(s) 439, 928
BmgT120I GGNCC 2 cut(s) 439, 928
BmiI GGNNCC 2 cut(s) 929, 1016
BmrFI CCNGG 3 cut(s) 824, 839, 1035
BmsI GCATC 3 cut(s) 222, 699, 1020
BplI GAGNNNNNCTC 4 cut(s) 641, 673, 847, 879
BpmI CTGGAG 1 cut(s) 860
Bpu10I CCTNAGC 1 cut(s) 671
Bpu1102I GCTNAGC 1 cut(s) 892
BpuMI CCSGG 2 cut(s) 824, 1035
BsaAI YACGTR 1 cut(s) 624
BsaHI GRCGYC 1 cut(s) 860
BsaWI WCCGGW 1 cut(s) 724
BsaXI ACNNNNNCTCC 2 cut(s) 984, 1014
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 838
Bse118I RCCGGY 1 cut(s) 686
Bse3DI GCAATG 1 cut(s) 131
BseBI CCWGG 1 cut(s) 839
BseGI GGATG 1 cut(s) 1035
BseLI CCNNNNNNNGG 2 cut(s) 277, 838
BseMI GCAATG 1 cut(s) 131
BseMII CTCAG 2 cut(s) 223, 381
BseRI GAGGAG 2 cut(s) 623, 809
BseXI GCAGC 2 cut(s) 630, 707
BseYI CCCAGC 1 cut(s) 1115
BshFI GGCC 3 cut(s) 190, 556, 571
BsiHKAI GWGCWC 1 cut(s) 396
BsiSI CCGG 4 cut(s) 687, 725, 824, 1034
BslFI GGGAC 1 cut(s) 941
BslI CCNNNNNNNGG 2 cut(s) 277, 838
BsmAI GTCTC 5 cut(s) 144, 227, 405, 661, 867
BsmBI CGTCTC 1 cut(s) 867
BsmFI GGGAC 1 cut(s) 941
BsmI GAATGC 1 cut(s) 505
BsnI GGCC 3 cut(s) 190, 556, 571
Bsp1286I GDGCHC 1 cut(s) 396
Bsp1720I GCTNAGC 1 cut(s) 892
BspANI GGCC 3 cut(s) 190, 556, 571
BspCNI CTCAG 2 cut(s) 222, 382
BspLI GGNNCC 2 cut(s) 929, 1016
BspPI GGATC 5 cut(s) 174, 330, 743, 1009, 1022
BsrDI GCAATG 1 cut(s) 131
BsrFI RCCGGY 1 cut(s) 686
BssAI RCCGGY 1 cut(s) 686
BssNI GRCGYC 1 cut(s) 860
Bst2UI CCWGG 1 cut(s) 839
Bst4CI ACNGT 3 cut(s) 344, 455, 805
Bst6I CTCTTC 1 cut(s) 80
BstACI GRCGYC 1 cut(s) 860
BstAPI GCANNNNNTGC 1 cut(s) 624
BstBAI YACGTR 1 cut(s) 624
BstC8I GCNNGC 3 cut(s) 138, 616, 688
BstDEI CTNAG 6 cut(s) 209, 390, 671, 772, 790, 892
BstF5I GGATG 1 cut(s) 1035
BstMAI GTCTC 5 cut(s) 144, 227, 405, 661, 867
BstMWI GCNNNNNNNGC 3 cut(s) 624, 692, 704
BstNI CCWGG 1 cut(s) 839
BstNSI RCATGY 2 cut(s) 434, 496
BstSCI CCNGG 3 cut(s) 822, 837, 1033
BstSFI CTRYAG 1 cut(s) 1108
BstV1I GCAGC 2 cut(s) 630, 707
BstX2I RGATCY 4 cut(s) 322, 370, 520, 1014
BstXI CCANNNNNNTGG 2 cut(s) 426, 1026
BstYI RGATCY 4 cut(s) 322, 370, 520, 1014
BsuRI GGCC 3 cut(s) 190, 556, 571
BtgZI GCGATG 1 cut(s) 676
BtsCI GGATG 1 cut(s) 1035
BtsI GCAGTG 1 cut(s) 294
BtsIMutI CAGTG 3 cut(s) 294, 486, 801
Cac8I GCNNGC 3 cut(s) 138, 616, 688
Cfr10I RCCGGY 1 cut(s) 686
Cfr13I GGNCC 2 cut(s) 439, 928
CseI GACGC 2 cut(s) 259, 849
Csp6I GTAC 2 cut(s) 160, 308
CspCI CAANNNNNGTGG 2 cut(s) 790, 825
CviAII CATG 8 cut(s) 397, 431, 476, 493, 639, 742, 949, 1076
CviQI GTAC 2 cut(s) 160, 308
DdeI CTNAG 6 cut(s) 209, 390, 671, 772, 790, 892
DraI TTTAAA 1 cut(s) 33
EaeI YGGCCR 2 cut(s) 188, 569
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
Ecl136II GAGCTC 1 cut(s) 394
Eco24I GRGCYC 1 cut(s) 396
Eco47I GGWCC 2 cut(s) 439, 928
Eco53kI GAGCTC 1 cut(s) 394
Eco57I CTGAAG 2 cut(s) 535, 957
Eco72I CACGTG 1 cut(s) 624
EcoICRI GAGCTC 1 cut(s) 394
EcoRII CCWGG 1 cut(s) 837
EcoT22I ATGCAT 1 cut(s) 583
EcoT38I GRGCYC 1 cut(s) 396
Esp3I CGTCTC 1 cut(s) 867
FaeI CATG 8 cut(s) 400, 434, 479, 496, 642, 745, 952, 1079
FaqI GGGAC 1 cut(s) 941
FatI CATG 8 cut(s) 396, 430, 475, 492, 638, 741, 948, 1075
FbaI TGATCA 1 cut(s) 915
Fnu4HI GCNGC 2 cut(s) 619, 696
FokI GGATG 1 cut(s) 1042
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 2 cut(s) 619, 696
FspBI CTAG 4 cut(s) 414, 423, 587, 1011
GluI GCNGC 2 cut(s) 619, 696
GsaI CCCAGC 1 cut(s) 1119
GsuI CTGGAG 1 cut(s) 860
HaeIII GGCC 3 cut(s) 190, 556, 571
HapII CCGG 4 cut(s) 687, 725, 824, 1034
HgaI GACGC 2 cut(s) 259, 849
Hin1I GRCGYC 1 cut(s) 860
Hin1II CATG 8 cut(s) 400, 434, 479, 496, 642, 745, 952, 1079
HincII GTYRAC 1 cut(s) 1101
HindII GTYRAC 1 cut(s) 1101
HindIII AAGCTT 1 cut(s) 42
HinfI GANTC 6 cut(s) 202, 654, 777, 795, 882, 901
HpaI GTTAAC 1 cut(s) 1101
HpaII CCGG 4 cut(s) 687, 725, 824, 1034
HphI GGTGA 2 cut(s) 17, 865
Hpy166II GTNNAC 2 cut(s) 347, 1101
Hpy188I TCNGA 5 cut(s) 52, 184, 391, 649, 900
Hpy8I GTNNAC 2 cut(s) 347, 1101
HpyAV CCTTC 6 cut(s) 416, 420, 452, 724, 748, 953
HpyCH4III ACNGT 3 cut(s) 344, 455, 805
HpyCH4IV ACGT 1 cut(s) 623
HpyCH4V TGCA 6 cut(s) 299, 505, 527, 581, 762, 1007
HpyF10VI GCNNNNNNNGC 3 cut(s) 624, 692, 704
HpyF3I CTNAG 6 cut(s) 209, 390, 671, 772, 790, 892
HpySE526I ACGT 1 cut(s) 623
Hsp92I GRCGYC 1 cut(s) 860
Hsp92II CATG 8 cut(s) 400, 434, 479, 496, 642, 745, 952, 1079
KroI GCCGGC 1 cut(s) 686
KroNI GCCGGC 1 cut(s) 688
Ksp22I TGATCA 1 cut(s) 915
KspAI GTTAAC 1 cut(s) 1101
LmnI GCTCC 3 cut(s) 544, 901, 992
Lsp1109I GCAGC 2 cut(s) 630, 707
LweI GCATC 3 cut(s) 222, 699, 1020
MaeI CTAG 4 cut(s) 414, 423, 587, 1011
MaeII ACGT 1 cut(s) 623
MaeIII GTNAC 1 cut(s) 641
MboII GAAGA 7 cut(s) 97, 197, 317, 530, 541, 748, 896
MfeI CAATTG 1 cut(s) 113
MflI RGATCY 4 cut(s) 322, 370, 520, 1014
MhlI GDGCHC 1 cut(s) 396
MluCI AATT 3 cut(s) 113, 558, 1040
MlyI GAGTC 1 cut(s) 663
Mph1103I ATGCAT 1 cut(s) 583
MroNI GCCGGC 1 cut(s) 686
MroXI GAANNNNTTC 1 cut(s) 942
MseI TTAA 3 cut(s) 32, 146, 1100
MslI CAYNNNNRTG 1 cut(s) 491
MspI CCGG 4 cut(s) 687, 725, 824, 1034
MspR9I CCNGG 3 cut(s) 824, 839, 1035
MunI CAATTG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 505
MvaI CCWGG 1 cut(s) 839
MwoI GCNNNNNNNGC 3 cut(s) 624, 692, 704
NaeI GCCGGC 1 cut(s) 688
NciI CCSGG 2 cut(s) 824, 1035
NgoMIV GCCGGC 1 cut(s) 686
NlaIII CATG 8 cut(s) 400, 434, 479, 496, 642, 745, 952, 1079
NlaIV GGNNCC 2 cut(s) 929, 1016
NmuCI GTSAC 1 cut(s) 641
NsiI ATGCAT 1 cut(s) 583
NspI RCATGY 2 cut(s) 434, 496
PciI ACATGT 1 cut(s) 492
PcsI WCGNNNNNNNCGW 1 cut(s) 308
PctI GAATGC 1 cut(s) 505
PdiI GCCGGC 1 cut(s) 688
PdmI GAANNNNTTC 1 cut(s) 942
PfeI GAWTC 5 cut(s) 202, 777, 795, 882, 901
PflMI CCANNNNNTGG 1 cut(s) 838
PkrI GCNGC 2 cut(s) 620, 697
PleI GAGTC 1 cut(s) 662
PmaCI CACGTG 1 cut(s) 624
PmlI CACGTG 1 cut(s) 624
PpsI GAGTC 1 cut(s) 662
Ppu21I YACGTR 1 cut(s) 624
PscI ACATGT 1 cut(s) 492
PsiI TTATAA 1 cut(s) 450
Psp124BI GAGCTC 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 837
PspCI CACGTG 1 cut(s) 624
PspFI CCCAGC 1 cut(s) 1115
PspGI CCWGG 1 cut(s) 837
PspN4I GGNNCC 2 cut(s) 929, 1016
PspPI GGNCC 2 cut(s) 439, 928
PsuI RGATCY 4 cut(s) 322, 370, 520, 1014
RsaI GTAC 2 cut(s) 161, 309
RsaNI GTAC 2 cut(s) 160, 308
RseI CAYNNNNRTG 1 cut(s) 491
SacI GAGCTC 1 cut(s) 396
SaqAI TTAA 3 cut(s) 32, 146, 1100
SatI GCNGC 2 cut(s) 619, 696
Sau96I GGNCC 2 cut(s) 439, 928
SchI GAGTC 1 cut(s) 663
ScrFI CCNGG 3 cut(s) 824, 839, 1035
SduI GDGCHC 1 cut(s) 396
SfaNI GCATC 3 cut(s) 222, 699, 1020
SfcI CTRYAG 1 cut(s) 1108
SinI GGWCC 2 cut(s) 439, 928
SmiMI CAYNNNNRTG 1 cut(s) 491
Sse9I AATT 3 cut(s) 113, 558, 1040
SspMI CTAG 4 cut(s) 414, 423, 587, 1011
SstI GAGCTC 1 cut(s) 396
StyD4I CCNGG 3 cut(s) 822, 837, 1033
TaaI ACNGT 3 cut(s) 344, 455, 805
TaiI ACGT 1 cut(s) 626
TaqI TCGA 2 cut(s) 565, 1044
TasI AATT 3 cut(s) 113, 558, 1040
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 5 cut(s) 202, 777, 795, 882, 901
Tru1I TTAA 3 cut(s) 32, 146, 1100
Tru9I TTAA 3 cut(s) 32, 146, 1100
TscAI CASTG 3 cut(s) 301, 493, 808
TseFI GTSAC 1 cut(s) 641
TseI GCWGC 2 cut(s) 618, 695
Tsp45I GTSAC 1 cut(s) 641
TspDTI ATGAA 9 cut(s) 36, 116, 120, 215, 317, 374, 730, 769, 1064
TspRI CASTG 3 cut(s) 301, 493, 808
Van91I CCANNNNNTGG 1 cut(s) 838
VpaK11BI GGWCC 2 cut(s) 439, 928
XapI RAATTY 1 cut(s) 1040
XceI RCATGY 2 cut(s) 434, 496
XcmI CCANNNNNNNNNTGG 1 cut(s) 564
XmnI GAANNNNTTC 1 cut(s) 942
XspI CTAG 4 cut(s) 414, 423, 587, 1011
Zsp2I ATGCAT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.