Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002372.1

Orthogroup ID

OG0001650

Physical Location & Seq

Genomic Coordinates Forward (+)

94174 .. 97778

Gene Structure 3605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002372.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

atgaattatagaatagcaatacaaccagtgtctataatagatcaagagatcataattgagagaatgggcagtgaagaacaaagctttgaggatgcgaaactggttgctgatgcaatggataatactcaggcatgtgcatcaaaggaaggtaaaggaaagcgtctgtggaagaaggtgaagtatcagctggttgagtaccactgtttgccccactatttaagggacaacgagtatatcgtgggtcattaccgctctgagtggccattgaagcaggtcttgctcagtatgttcaccatccacaatgagacgctgaacgtttggacgcatttgatcgggttcttcctttttcttgccctgaccatatacactgcaatgaaggttccagaggtcgttgatcttcatgtcctgccagatgtgctgaaaaatgctgatcttcacaagttgcatgaagaactcatgacatgcctcccgtcattacccaacatgcctggtctgaacaaactcagggaggagttaaaaacttcattgccttcaatggatctgcttccctcactctctggttggcatgttatggaacttctgaataattgtttgcctcagaggttctcccatggcaaccacactgatgtttgtgttctgcatagcatgaaggaagatttagcaaacataatagcaccattggtgttgagacctatcacacggtggccattttttgctttcttgggaggagcaatgttttgcttgctggccagtagcgcttgccatcttctctcttgtcactctgagcgaatgtcatatatcatgctcaggctggactatgctggaattgcagccctcatatccacctcattttaccctcttgtctactactccttcatgtgcaaccctttcttctgcaccctttacatggggttcattaccatcttgggaattgccacagtcttggtttccctcttgcctgtctttcaaactcctcagtaccgaagcgtccgtgcatctcttttcttcggcatgggcttgtcgggcattctacctatcctccacaaggttatcttgttttcagaccaacccgaggcactccacacaactgggtatgagattctcatggggcttttctatgggattggggcactggtttatgcaacaaggattccagaacgatggatgcctgggaaattcgacattgcagggcacagccaccaactgtttcacgtactggtagtcgcaggcgcatacactcattaccgtgcagggcttgtttacttgaagtggcgcgatttagaaggttgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0010033 GO:0034285 GO:0042221 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

430

Amino Acids

48.97

Weight (kDa)

6.69

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37680 AT4G37680 AT4G37680 AT4G37680 AT4G37680 AT4G38320
fragaria_vesca	FvH4_1g17920 FvH4_1g17920 FvH4_1g17920 FvH4_5g20320 FvH4_5g20320 FvH4_5g20320
malus_domestica	MD02G1187800.v1.1 MD04G1053000.v1.1 MD06G1047400.v1.1 MD15G1298700.v1.1
prunus_persica	Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.6G219200_v2.0.a1 Prupe.6G219200_v2.0.a1
pyrus_communis	pycom02g15270 pycom04g04650 pycom06g04030 pycom15g26150
rosa_chinensis	RchiOBHm_Chr2g0108351 RchiOBHm_Chr7g0205491
rosa_laevigata	RLG00000003374 RLG00000017663
rosa_multiflora	Rmu_sc0002237.1_g000016 Rmu_sc0002372.1_g000016 Rmu_sc0041421.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135220 Rroxscaffold_3G00252180
rosa_rugosa	Rorug02G0152200 Rorug07G0091600 Rorug07G0091700
rosa_samantha	Rh2AG201200 Rh2BG214100 Rh2CG205500 Rh2DG208600 Rh7AG222300 Rh7BG217700 Rh7CG234700 Rh7DG228700
rosa_wichuraiana	Rw2G016020 Rw2G016080 Rw7G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	262
AccBSI	CCGCTC	1 cut(s)	252
AccI	GTMKAC	1 cut(s)	864
AccII	CGCG	1 cut(s)	1275
AciI	CCGC	1 cut(s)	250
AclI	AACGTT	1 cut(s)	315
AclWI	GGATC	1 cut(s)	546
AcoI	YGGCCR	3 cut(s)	260, 704, 747
AcsI	RAATTY	1 cut(s)	1175
AdeI	CACNNNGTG	1 cut(s)	702
AfaI	GTAC	3 cut(s)	197, 980, 1215
AfeI	AGCGCT	1 cut(s)	757
AfiI	CCNNNNNNNGG	3 cut(s)	907, 1045, 1072
AgsI	TTSAA	4 cut(s)	268, 534, 968, 1267
AjnI	CCWGG	2 cut(s)	487, 1168
AluBI	AGCT	2 cut(s)	84, 187
AluI	AGCT	2 cut(s)	84, 187
Alw26I	GTCTC	2 cut(s)	299, 682
AlwI	GGATC	1 cut(s)	546
Ama87I	CYCGRG	1 cut(s)	1070
Aor51HI	AGCGCT	1 cut(s)	757
AoxI	GGCC	3 cut(s)	260, 704, 747
ApeKI	GCWGC	1 cut(s)	830
ApoI	RAATTY	1 cut(s)	1175
AspLEI	GCGC	3 cut(s)	758, 1232, 1275
AsuHPI	GGTGA	2 cut(s)	187, 283
AvaI	CYCGRG	1 cut(s)	1070
BaeGI	GKGCMC	2 cut(s)	1132, 1194
BalI	TGGCCA	3 cut(s)	262, 706, 749
BbvI	GCAGC	1 cut(s)	842
BccI	CCATC	4 cut(s)	302, 771, 929, 1155
BciT130I	CCWGG	2 cut(s)	489, 1170
BcoDI	GTCTC	2 cut(s)	299, 682
BfoI	RGCGCY	1 cut(s)	759
BfuAI	ACCTGC	1 cut(s)	262
BisI	GCNGC	1 cut(s)	831
BlsI	GCNGC	1 cut(s)	832
Bme1390I	CCNGG	2 cut(s)	489, 1170
BmeT110I	CYCGRG	1 cut(s)	1070
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	2 cut(s)	489, 1170
BmrI	ACTGGG	1 cut(s)	1098
BmsI	GCATC	5 cut(s)	82, 100, 146, 1004, 1155
BmuI	ACTGGG	1 cut(s)	1098
Bpu10I	CCTNAGC	1 cut(s)	806
BsaAI	YACGTR	1 cut(s)	1213
BsaI	GGTCTC	1 cut(s)	682
BsaJI	CCNNGG	3 cut(s)	610, 1071, 1169
BsaXI	ACNNNNNCTCC	2 cut(s)	1023, 1053
Bsc4I	CCNNNNNNNGG	3 cut(s)	907, 1045, 1072
Bse1I	ACTGG	6 cut(s)	26, 105, 750, 1093, 1137, 1221
Bse3DI	GCAATG	5 cut(s)	120, 378, 524, 738, 1182
BseBI	CCWGG	2 cut(s)	489, 1170
BseDI	CCNNGG	3 cut(s)	610, 1071, 1169
BseGI	GGATG	3 cut(s)	97, 294, 1170
BseLI	CCNNNNNNNGG	3 cut(s)	907, 1045, 1072
BseMI	GCAATG	5 cut(s)	120, 378, 524, 738, 1182
BseMII	CTCAG	8 cut(s)	140, 246, 295, 517, 611, 774, 820, 989
BseNI	ACTGG	6 cut(s)	26, 105, 750, 1093, 1137, 1221
BseRI	GAGGAG	3 cut(s)	524, 741, 963
BseSI	GKGCMC	2 cut(s)	1132, 1194
BseXI	GCAGC	1 cut(s)	842
BsgI	GTGCAG	2 cut(s)	880, 1269
Bsh1236I	CGCG	1 cut(s)	1275
BshFI	GGCC	3 cut(s)	262, 706, 749
BsiHKCI	CYCGRG	1 cut(s)	1070
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	3 cut(s)	907, 1045, 1072
BsmAI	GTCTC	2 cut(s)	299, 682
BsmBI	CGTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	1026
BsnI	GGCC	3 cut(s)	262, 706, 749
Bso31I	GGTCTC	1 cut(s)	682
BsoBI	CYCGRG	1 cut(s)	1070
Bsp1286I	GDGCHC	2 cut(s)	1132, 1194
Bsp143I	GATC	6 cut(s)	40, 48, 330, 394, 430, 538
Bsp19I	CCATGG	1 cut(s)	610
BspACI	CCGC	1 cut(s)	250
BspANI	GGCC	3 cut(s)	262, 706, 749
BspCNI	CTCAG	8 cut(s)	139, 247, 294, 516, 610, 775, 819, 988
BspFNI	CGCG	1 cut(s)	1275
BspHI	TCATGA	1 cut(s)	456
BspLI	GGNNCC	1 cut(s)	381
BspMI	ACCTGC	1 cut(s)	262
BspPI	GGATC	1 cut(s)	546
BspTNI	GGTCTC	1 cut(s)	682
BsrBI	CCGCTC	1 cut(s)	252
BsrDI	GCAATG	5 cut(s)	120, 378, 524, 738, 1182
BsrI	ACTGG	6 cut(s)	26, 105, 750, 1093, 1137, 1221
BssECI	CCNNGG	3 cut(s)	610, 1071, 1169
BssMI	GATC	6 cut(s)	40, 48, 330, 394, 430, 538
BssT1I	CCWWGG	1 cut(s)	610
Bst2UI	CCWGG	2 cut(s)	489, 1170
Bst4CI	ACNGT	5 cut(s)	203, 702, 940, 1206, 1247
BstAPI	GCANNNNNTGC	1 cut(s)	277
BstBAI	YACGTR	1 cut(s)	1213
BstC8I	GCNNGC	4 cut(s)	743, 747, 760, 1228
BstDEI	CTNAG	8 cut(s)	126, 255, 281, 503, 597, 783, 806, 975
BstDSI	CCRYGG	1 cut(s)	610
BstENI	CCTNNNNNAGG	1 cut(s)	1043
BstF5I	GGATG	3 cut(s)	97, 294, 1170
BstFNI	CGCG	1 cut(s)	1275
BstH2I	RGCGCY	1 cut(s)	759
BstHHI	GCGC	3 cut(s)	758, 1232, 1275
BstKTI	GATC	6 cut(s)	43, 51, 333, 397, 433, 541
BstMAI	GTCTC	2 cut(s)	299, 682
BstMBI	GATC	6 cut(s)	40, 48, 330, 394, 430, 538
BstMWI	GCNNNNNNNGC	6 cut(s)	268, 277, 415, 755, 827, 1023
BstNI	CCWGG	2 cut(s)	489, 1170
BstNSI	RCATGY	4 cut(s)	135, 465, 487, 569
BstSCI	CCNGG	2 cut(s)	487, 1168
BstSLI	GKGCMC	2 cut(s)	1132, 1194
BstUI	CGCG	1 cut(s)	1275
BstV1I	GCAGC	1 cut(s)	842
BstX2I	RGATCY	1 cut(s)	538
BstXI	CCANNNNNNTGG	3 cut(s)	943, 1088, 1161
BstYI	RGATCY	1 cut(s)	538
BsuRI	GGCC	3 cut(s)	262, 706, 749
BtgI	CCRYGG	1 cut(s)	610
BtsCI	GGATG	3 cut(s)	97, 294, 1170
BtsI	GCAGTG	2 cut(s)	76, 366
BtsIMutI	CAGTG	6 cut(s)	33, 76, 199, 366, 621, 1130
BveI	ACCTGC	1 cut(s)	262
Cac8I	GCNNGC	4 cut(s)	743, 747, 760, 1228
CciI	TCATGA	1 cut(s)	456
CfoI	GCGC	3 cut(s)	758, 1232, 1275
CseI	GACGC	4 cut(s)	149, 316, 331, 976
Csp6I	GTAC	3 cut(s)	196, 979, 1214
CviQI	GTAC	3 cut(s)	196, 979, 1214
DdeI	CTNAG	8 cut(s)	126, 255, 281, 503, 597, 783, 806, 975
DpnI	GATC	6 cut(s)	42, 50, 332, 396, 432, 540
DpnII	GATC	6 cut(s)	40, 48, 330, 394, 430, 538
DraIII	CACNNNGTG	1 cut(s)	702
EaeI	YGGCCR	3 cut(s)	260, 704, 747
Eco130I	CCWWGG	1 cut(s)	610
Eco31I	GGTCTC	1 cut(s)	682
Eco47III	AGCGCT	1 cut(s)	757
Eco88I	CYCGRG	1 cut(s)	1070
EcoNI	CCTNNNNNAGG	1 cut(s)	1043
EcoRII	CCWGG	2 cut(s)	487, 1168
EcoT14I	CCWWGG	1 cut(s)	610
ErhI	CCWWGG	1 cut(s)	610
Esp3I	CGTCTC	1 cut(s)	299
FalI	AAGNNNNNCTT	4 cut(s)	260, 292, 1037, 1069
FaqI	GGGAC	1 cut(s)	236
FblI	GTMKAC	1 cut(s)	864
Fnu4HI	GCNGC	1 cut(s)	831
FokI	GGATG	3 cut(s)	104, 281, 1177
Fsp4HI	GCNGC	1 cut(s)	831
GlaI	GCGC	3 cut(s)	757, 1231, 1274
GluI	GCNGC	1 cut(s)	831
HaeII	RGCGCY	1 cut(s)	759
HaeIII	GGCC	3 cut(s)	262, 706, 749
HgaI	GACGC	4 cut(s)	149, 316, 331, 976
HhaI	GCGC	3 cut(s)	758, 1232, 1275
Hin6I	GCGC	3 cut(s)	756, 1230, 1273
HinP1I	GCGC	3 cut(s)	756, 1230, 1273
HindIII	AAGCTT	1 cut(s)	82
HinfI	GANTC	2 cut(s)	1099, 1150
HphI	GGTGA	2 cut(s)	187, 283
Hpy166II	GTNNAC	3 cut(s)	291, 865, 1261
Hpy188I	TCNGA	6 cut(s)	256, 495, 582, 600, 784, 1063
Hpy188III	TCNNGA	4 cut(s)	44, 383, 457, 1154
Hpy8I	GTNNAC	3 cut(s)	291, 865, 1261
HpyAV	CCTTC	7 cut(s)	140, 166, 370, 540, 643, 883, 1277
HpyCH4III	ACNGT	5 cut(s)	203, 702, 940, 1206, 1247
HpyCH4IV	ACGT	2 cut(s)	315, 1212
HpyF10VI	GCNNNNNNNGC	6 cut(s)	268, 277, 415, 755, 827, 1023
HpyF3I	CTNAG	8 cut(s)	126, 255, 281, 503, 597, 783, 806, 975
HpySE526I	ACGT	2 cut(s)	315, 1212
HspAI	GCGC	3 cut(s)	756, 1230, 1273
Kzo9I	GATC	6 cut(s)	40, 48, 330, 394, 430, 538
LmnI	GCTCC	1 cut(s)	728
Lsp1109I	GCAGC	1 cut(s)	842
LweI	GCATC	5 cut(s)	82, 100, 146, 1004, 1155
MaeII	ACGT	2 cut(s)	315, 1212
MaeIII	GTNAC	1 cut(s)	776
MalI	GATC	6 cut(s)	42, 50, 332, 396, 432, 540
MbiI	CCGCTC	1 cut(s)	252
MboI	GATC	6 cut(s)	40, 48, 330, 394, 430, 538
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	2 cut(s)	1132, 1194
MlsI	TGGCCA	3 cut(s)	262, 706, 749
MluCI	AATT	6 cut(s)	4, 54, 586, 825, 930, 1175
MluNI	TGGCCA	3 cut(s)	262, 706, 749
Mox20I	TGGCCA	3 cut(s)	262, 706, 749
MscI	TGGCCA	3 cut(s)	262, 706, 749
MseI	TTAA	2 cut(s)	218, 515
MslI	CAYNNNNRTG	3 cut(s)	371, 624, 1245
Msp20I	TGGCCA	3 cut(s)	262, 706, 749
MspA1I	CMGCKG	1 cut(s)	187
MspR9I	CCNGG	2 cut(s)	489, 1170
Mva1269I	GAATGC	1 cut(s)	1026
MvaI	CCWGG	2 cut(s)	489, 1170
MvnI	CGCG	1 cut(s)	1275
MwoI	GCNNNNNNNGC	6 cut(s)	268, 277, 415, 755, 827, 1023
NcoI	CCATGG	1 cut(s)	610
NdeII	GATC	6 cut(s)	40, 48, 330, 394, 430, 538
NlaIV	GGNNCC	1 cut(s)	381
NmuCI	GTSAC	1 cut(s)	776
NspI	RCATGY	4 cut(s)	135, 465, 487, 569
PagI	TCATGA	1 cut(s)	456
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PctI	GAATGC	1 cut(s)	1026
PfeI	GAWTC	2 cut(s)	1099, 1150
PkrI	GCNGC	1 cut(s)	832
Ppu21I	YACGTR	1 cut(s)	1213
Psp1406I	AACGTT	1 cut(s)	315
Psp6I	CCWGG	2 cut(s)	487, 1168
PspGI	CCWGG	2 cut(s)	487, 1168
PspN4I	GGNNCC	1 cut(s)	381
PsuI	RGATCY	1 cut(s)	538
PvuII	CAGCTG	1 cut(s)	187
RsaI	GTAC	3 cut(s)	197, 980, 1215
RsaNI	GTAC	3 cut(s)	196, 979, 1214
RseI	CAYNNNNRTG	3 cut(s)	371, 624, 1245
SaqAI	TTAA	2 cut(s)	218, 515
SatI	GCNGC	1 cut(s)	831
Sau3AI	GATC	6 cut(s)	40, 48, 330, 394, 430, 538
ScrFI	CCNGG	2 cut(s)	489, 1170
SduI	GDGCHC	2 cut(s)	1132, 1194
SfaNI	GCATC	5 cut(s)	82, 100, 146, 1004, 1155
SmiMI	CAYNNNNRTG	3 cut(s)	371, 624, 1245
Sse9I	AATT	6 cut(s)	4, 54, 586, 825, 930, 1175
SsiI	CCGC	1 cut(s)	250
StyD4I	CCNGG	2 cut(s)	487, 1168
StyI	CCWWGG	1 cut(s)	610
TaaI	ACNGT	5 cut(s)	203, 702, 940, 1206, 1247
TaiI	ACGT	2 cut(s)	318, 1215
TaqI	TCGA	1 cut(s)	1179
TasI	AATT	6 cut(s)	4, 54, 586, 825, 930, 1175
TfiI	GAWTC	2 cut(s)	1099, 1150
Tru1I	TTAA	2 cut(s)	218, 515
Tru9I	TTAA	2 cut(s)	218, 515
TscAI	CASTG	6 cut(s)	33, 76, 206, 373, 628, 1137
TseFI	GTSAC	1 cut(s)	776
TseI	GCWGC	1 cut(s)	830
Tsp45I	GTSAC	1 cut(s)	776
TspDTI	ATGAA	8 cut(s)	17, 389, 389, 462, 513, 662, 865, 904
TspGWI	ACGGA	1 cut(s)	980
TspRI	CASTG	6 cut(s)	33, 76, 206, 373, 628, 1137
XagI	CCTNNNNNAGG	1 cut(s)	1043
XapI	RAATTY	1 cut(s)	1175
XceI	RCATGY	4 cut(s)	135, 465, 487, 569
XmiI	GTMKAC	1 cut(s)	864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.