Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001650

Physical Location & Seq

Genomic Coordinates Forward (+)

19599067 .. 19605255

Gene Structure 6189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017663

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGAAGAGGGAGATGGGGAAGGTTGGAGGGTTATATATAGGATTGGAAGAGGGATTGCGTATAAGAATTGAGAGAATGGGCAGTGAAGAACAAAGCTTTGAGGATGCGAAACTGGTTGCTGATGCAATGGATAATACTCAGGCATGTGCATCAAAGGAAGGTAAAGGAAAGCGTCTGTGGAAGAAGGTGAAGTATCAGCTGGTTGAGTACCACTGCTTGCCCCACTATTTAAGGGACAACGAGTATATCGTGGGTCATTACCGCTCTGAGTGGCCATTGAAGCAGGTCTTGCTCAGTATGTTCACCATCCACAATGAGACGCTGAACGTTTGGACGCATTTGATCGGGTTCTTCCTTTTTCTTGCCCTGACCATATACACTGCAATGAAGGTTCCAGAGGTCGTTGATCTTCATGTCCTACCAGATGTGCTGAAAAATGCTGATCTTCACAAGTTGCGTGAAGAACTCATGACATGCCTCCCGTCATTACCCAACATGCCTGATCTGAACAAACTCAGGGAGGAGTTAAAGACTTCATTGCCTTCAATGGATCTGCTTCCCTCACTCTCTGGTTGGCATGTTATGGAACTTCTGAATAATTGTTTGCCTCAGAGGTTCTCCCATGGCAACCACACTGATGTTTGTGTTCTGCATAGCATGAAGGAAGATTTAGCAAACATAATAGCACCATTGGTGTTGAGACCTATCACACGGTGGCCATTTTTTGCTTTCTTGGGAGGAGCAATGTTTTGCTTGCTGGCCAGTAGCGCTTGCCATCTTCTCTCTTGTCACTCTGAGCGAATGTCATATATCATGCTCAGGATGGACTATGCTGGAATTGCAGCCCTCATATCCACCTCATTTTACCCTCTTGTCTACTACTCCTTCATGTGCAACCCTTTCTTCTGCACCCTTTACATGGGGTTCATAACCATCTTGGGAATTGCCACAGTCTTGGTTTCCCTCTTGCCTGTCTTTCAAACTCCTCAGTACCGTAGTGTCCGTGCATCTCTTTTCTTCGGCATGGGTTTGTCGGGCATTCTACCTATCCTCCACAAGGTTATCTTGTTTTCAGACCAACCCGAGGCACTCCACACAACTGGGTATGAGATTCTCATGGGGCTTTTCTATGGGGTTGGGGCACTGGTTTATGCAACAAGGATTCCAGAACGATGGATGCCTGGGAAATTCGACATTGCAGGGCATAGCCACCAACTGTTTCACGTACTGGTAGTCGCAGGCGCATACACTCATTACCGTGCAGGGCTTGTCTACTTGAAGTGGCGCGATTTAGAAGGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0010033 GO:0034285 GO:0042221 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

435

Amino Acids

49.44

Weight (kDa)

7.28

Isoelectric Point (pI)

52.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HlyIII	PF03006	101 - 130	2.5e-06	Haemolysin-III related
HlyIII	PF03006	234 - 419	7.2e-56	Haemolysin-III related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37680 AT4G37680 AT4G37680 AT4G37680 AT4G37680 AT4G38320
fragaria_vesca	FvH4_1g17920 FvH4_1g17920 FvH4_1g17920 FvH4_5g20320 FvH4_5g20320 FvH4_5g20320
malus_domestica	MD02G1187800.v1.1 MD04G1053000.v1.1 MD06G1047400.v1.1 MD15G1298700.v1.1
prunus_persica	Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.6G219200_v2.0.a1 Prupe.6G219200_v2.0.a1
pyrus_communis	pycom02g15270 pycom04g04650 pycom06g04030 pycom15g26150
rosa_chinensis	RchiOBHm_Chr2g0108351 RchiOBHm_Chr7g0205491
rosa_laevigata	RLG00000003374 RLG00000017663
rosa_multiflora	Rmu_sc0002237.1_g000016 Rmu_sc0002372.1_g000016 Rmu_sc0041421.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135220 Rroxscaffold_3G00252180
rosa_rugosa	Rorug02G0152200 Rorug07G0091600 Rorug07G0091700
rosa_samantha	Rh2AG201200 Rh2BG214100 Rh2CG205500 Rh2DG208600 Rh7AG222300 Rh7BG217700 Rh7CG234700 Rh7DG228700
rosa_wichuraiana	Rw2G016020 Rw2G016080 Rw7G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	274
AccBSI	CCGCTC	1 cut(s)	264
AccI	GTMKAC	2 cut(s)	876, 1272
AccII	CGCG	1 cut(s)	1287
AciI	CCGC	1 cut(s)	262
AclI	AACGTT	1 cut(s)	327
AclWI	GGATC	1 cut(s)	558
AcoI	YGGCCR	3 cut(s)	272, 716, 759
AcsI	RAATTY	1 cut(s)	1187
AdeI	CACNNNGTG	1 cut(s)	714
AfaI	GTAC	3 cut(s)	209, 992, 1227
AfeI	AGCGCT	1 cut(s)	769
AfiI	CCNNNNNNNGG	3 cut(s)	919, 1057, 1084
AgsI	TTSAA	4 cut(s)	280, 546, 980, 1279
AjnI	CCWGG	1 cut(s)	1180
AluBI	AGCT	2 cut(s)	96, 199
AluI	AGCT	2 cut(s)	96, 199
Alw26I	GTCTC	2 cut(s)	311, 694
AlwI	GGATC	1 cut(s)	558
Ama87I	CYCGRG	1 cut(s)	1082
Aor51HI	AGCGCT	1 cut(s)	769
AoxI	GGCC	3 cut(s)	272, 716, 759
ApeKI	GCWGC	1 cut(s)	842
ApoI	RAATTY	1 cut(s)	1187
AspLEI	GCGC	3 cut(s)	770, 1244, 1287
AsuHPI	GGTGA	2 cut(s)	199, 295
AvaI	CYCGRG	1 cut(s)	1082
BaeGI	GKGCMC	1 cut(s)	1144
BalI	TGGCCA	3 cut(s)	274, 718, 761
BbvI	GCAGC	1 cut(s)	854
BccI	CCATC	6 cut(s)	7, 314, 783, 817, 941, 1167
BciT130I	CCWGG	1 cut(s)	1182
BcoDI	GTCTC	2 cut(s)	311, 694
BfoI	RGCGCY	1 cut(s)	771
BfuAI	ACCTGC	1 cut(s)	274
BisI	GCNGC	1 cut(s)	843
BlsI	GCNGC	1 cut(s)	844
Bme1390I	CCNGG	1 cut(s)	1182
BmeT110I	CYCGRG	1 cut(s)	1082
BmiI	GGNNCC	1 cut(s)	393
BmrFI	CCNGG	1 cut(s)	1182
BmrI	ACTGGG	1 cut(s)	1110
BmsI	GCATC	5 cut(s)	94, 112, 158, 1016, 1167
BmuI	ACTGGG	1 cut(s)	1110
Bpu10I	CCTNAGC	1 cut(s)	818
BsaAI	YACGTR	1 cut(s)	1225
BsaI	GGTCTC	1 cut(s)	694
BsaJI	CCNNGG	3 cut(s)	622, 1083, 1181
BsaXI	ACNNNNNCTCC	2 cut(s)	1035, 1065
Bsc4I	CCNNNNNNNGG	3 cut(s)	919, 1057, 1084
Bse1I	ACTGG	5 cut(s)	117, 762, 1105, 1149, 1233
Bse3DI	GCAATG	5 cut(s)	132, 390, 536, 750, 1194
BseBI	CCWGG	1 cut(s)	1182
BseDI	CCNNGG	3 cut(s)	622, 1083, 1181
BseGI	GGATG	4 cut(s)	109, 306, 828, 1182
BseLI	CCNNNNNNNGG	3 cut(s)	919, 1057, 1084
BseMI	GCAATG	5 cut(s)	132, 390, 536, 750, 1194
BseMII	CTCAG	8 cut(s)	152, 258, 307, 529, 623, 786, 832, 1001
BseNI	ACTGG	5 cut(s)	117, 762, 1105, 1149, 1233
BseRI	GAGGAG	3 cut(s)	536, 753, 975
BseSI	GKGCMC	1 cut(s)	1144
BseXI	GCAGC	1 cut(s)	854
BsgI	GTGCAG	2 cut(s)	892, 1281
Bsh1236I	CGCG	1 cut(s)	1287
BshFI	GGCC	3 cut(s)	274, 718, 761
BsiHKCI	CYCGRG	1 cut(s)	1082
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	3 cut(s)	919, 1057, 1084
BsmAI	GTCTC	2 cut(s)	311, 694
BsmBI	CGTCTC	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	1038
BsnI	GGCC	3 cut(s)	274, 718, 761
Bso31I	GGTCTC	1 cut(s)	694
BsoBI	CYCGRG	1 cut(s)	1082
Bsp1286I	GDGCHC	1 cut(s)	1144
Bsp143I	GATC	5 cut(s)	342, 406, 442, 502, 550
Bsp19I	CCATGG	1 cut(s)	622
BspACI	CCGC	1 cut(s)	262
BspANI	GGCC	3 cut(s)	274, 718, 761
BspCNI	CTCAG	8 cut(s)	151, 259, 306, 528, 622, 787, 831, 1000
BspFNI	CGCG	1 cut(s)	1287
BspHI	TCATGA	1 cut(s)	468
BspLI	GGNNCC	1 cut(s)	393
BspMI	ACCTGC	1 cut(s)	274
BspPI	GGATC	1 cut(s)	558
BspTNI	GGTCTC	1 cut(s)	694
BsrBI	CCGCTC	1 cut(s)	264
BsrDI	GCAATG	5 cut(s)	132, 390, 536, 750, 1194
BsrI	ACTGG	5 cut(s)	117, 762, 1105, 1149, 1233
BssECI	CCNNGG	3 cut(s)	622, 1083, 1181
BssMI	GATC	5 cut(s)	342, 406, 442, 502, 550
BssT1I	CCWWGG	1 cut(s)	622
Bst2UI	CCWGG	1 cut(s)	1182
Bst4CI	ACNGT	5 cut(s)	714, 952, 995, 1218, 1259
Bst6I	CTCTTC	1 cut(s)	42
BstAPI	GCANNNNNTGC	1 cut(s)	289
BstBAI	YACGTR	1 cut(s)	1225
BstC8I	GCNNGC	5 cut(s)	218, 755, 759, 772, 1240
BstDEI	CTNAG	8 cut(s)	138, 267, 293, 515, 609, 795, 818, 987
BstDSI	CCRYGG	1 cut(s)	622
BstENI	CCTNNNNNAGG	1 cut(s)	1055
BstF5I	GGATG	4 cut(s)	109, 306, 828, 1182
BstFNI	CGCG	1 cut(s)	1287
BstH2I	RGCGCY	1 cut(s)	771
BstHHI	GCGC	3 cut(s)	770, 1244, 1287
BstKTI	GATC	5 cut(s)	345, 409, 445, 505, 553
BstMAI	GTCTC	2 cut(s)	311, 694
BstMBI	GATC	5 cut(s)	342, 406, 442, 502, 550
BstMWI	GCNNNNNNNGC	4 cut(s)	280, 289, 767, 839
BstNI	CCWGG	1 cut(s)	1182
BstNSI	RCATGY	4 cut(s)	147, 477, 499, 581
BstSCI	CCNGG	1 cut(s)	1180
BstSLI	GKGCMC	1 cut(s)	1144
BstUI	CGCG	1 cut(s)	1287
BstV1I	GCAGC	1 cut(s)	854
BstX2I	RGATCY	1 cut(s)	550
BstXI	CCANNNNNNTGG	3 cut(s)	955, 1100, 1173
BstYI	RGATCY	1 cut(s)	550
BsuRI	GGCC	3 cut(s)	274, 718, 761
BtgI	CCRYGG	1 cut(s)	622
BtsCI	GGATG	4 cut(s)	109, 306, 828, 1182
BtsI	GCAGTG	3 cut(s)	88, 211, 378
BtsIMutI	CAGTG	5 cut(s)	88, 211, 378, 633, 1142
BveI	ACCTGC	1 cut(s)	274
Cac8I	GCNNGC	5 cut(s)	218, 755, 759, 772, 1240
CciI	TCATGA	1 cut(s)	468
CfoI	GCGC	3 cut(s)	770, 1244, 1287
CseI	GACGC	3 cut(s)	161, 328, 343
Csp6I	GTAC	3 cut(s)	208, 991, 1226
CviJI	RGCY	9 cut(s)	96, 199, 274, 718, 761, 845, 1123, 1209, 1267
CviKI_1	RGCY	9 cut(s)	96, 199, 274, 718, 761, 845, 1123, 1209, 1267
CviQI	GTAC	3 cut(s)	208, 991, 1226
DdeI	CTNAG	8 cut(s)	138, 267, 293, 515, 609, 795, 818, 987
DpnI	GATC	5 cut(s)	344, 408, 444, 504, 552
DpnII	GATC	5 cut(s)	342, 406, 442, 502, 550
DraIII	CACNNNGTG	1 cut(s)	714
EaeI	YGGCCR	3 cut(s)	272, 716, 759
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	622
Eco31I	GGTCTC	1 cut(s)	694
Eco47III	AGCGCT	1 cut(s)	769
Eco88I	CYCGRG	1 cut(s)	1082
EcoNI	CCTNNNNNAGG	1 cut(s)	1055
EcoRII	CCWGG	1 cut(s)	1180
EcoT14I	CCWWGG	1 cut(s)	622
ErhI	CCWWGG	1 cut(s)	622
Esp3I	CGTCTC	1 cut(s)	311
FalI	AAGNNNNNCTT	4 cut(s)	272, 304, 1049, 1081
FaqI	GGGAC	1 cut(s)	248
FblI	GTMKAC	2 cut(s)	876, 1272
Fnu4HI	GCNGC	1 cut(s)	843
FokI	GGATG	4 cut(s)	116, 293, 835, 1189
Fsp4HI	GCNGC	1 cut(s)	843
GlaI	GCGC	3 cut(s)	769, 1243, 1286
GluI	GCNGC	1 cut(s)	843
HaeII	RGCGCY	1 cut(s)	771
HaeIII	GGCC	3 cut(s)	274, 718, 761
HgaI	GACGC	3 cut(s)	161, 328, 343
HhaI	GCGC	3 cut(s)	770, 1244, 1287
Hin6I	GCGC	3 cut(s)	768, 1242, 1285
HinP1I	GCGC	3 cut(s)	768, 1242, 1285
HindIII	AAGCTT	1 cut(s)	94
HinfI	GANTC	2 cut(s)	1111, 1162
HphI	GGTGA	2 cut(s)	199, 295
Hpy166II	GTNNAC	3 cut(s)	303, 877, 1273
Hpy188I	TCNGA	6 cut(s)	268, 507, 594, 612, 796, 1075
Hpy188III	TCNNGA	4 cut(s)	395, 469, 820, 1166
Hpy8I	GTNNAC	3 cut(s)	303, 877, 1273
HpyAV	CCTTC	8 cut(s)	13, 152, 178, 382, 552, 655, 895, 1289
HpyCH4III	ACNGT	5 cut(s)	714, 952, 995, 1218, 1259
HpyCH4IV	ACGT	2 cut(s)	327, 1224
HpyF10VI	GCNNNNNNNGC	4 cut(s)	280, 289, 767, 839
HpyF3I	CTNAG	8 cut(s)	138, 267, 293, 515, 609, 795, 818, 987
HpySE526I	ACGT	2 cut(s)	327, 1224
HspAI	GCGC	3 cut(s)	768, 1242, 1285
Kzo9I	GATC	5 cut(s)	342, 406, 442, 502, 550
LmnI	GCTCC	1 cut(s)	740
Lsp1109I	GCAGC	1 cut(s)	854
LweI	GCATC	5 cut(s)	94, 112, 158, 1016, 1167
MaeII	ACGT	2 cut(s)	327, 1224
MaeIII	GTNAC	1 cut(s)	788
MalI	GATC	5 cut(s)	344, 408, 444, 504, 552
MbiI	CCGCTC	1 cut(s)	264
MboI	GATC	5 cut(s)	342, 406, 442, 502, 550
MflI	RGATCY	1 cut(s)	550
MhlI	GDGCHC	1 cut(s)	1144
MlsI	TGGCCA	3 cut(s)	274, 718, 761
MluCI	AATT	5 cut(s)	66, 598, 837, 942, 1187
MluNI	TGGCCA	3 cut(s)	274, 718, 761
MmeI	TCCRAC	1 cut(s)	4
Mox20I	TGGCCA	3 cut(s)	274, 718, 761
MscI	TGGCCA	3 cut(s)	274, 718, 761
MseI	TTAA	2 cut(s)	230, 527
MslI	CAYNNNNRTG	3 cut(s)	383, 636, 1257
Msp20I	TGGCCA	3 cut(s)	274, 718, 761
MspA1I	CMGCKG	1 cut(s)	199
MspR9I	CCNGG	1 cut(s)	1182
Mva1269I	GAATGC	1 cut(s)	1038
MvaI	CCWGG	1 cut(s)	1182
MvnI	CGCG	1 cut(s)	1287
MwoI	GCNNNNNNNGC	4 cut(s)	280, 289, 767, 839
NcoI	CCATGG	1 cut(s)	622
NdeII	GATC	5 cut(s)	342, 406, 442, 502, 550
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	788
NspI	RCATGY	4 cut(s)	147, 477, 499, 581
PagI	TCATGA	1 cut(s)	468
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PctI	GAATGC	1 cut(s)	1038
PfeI	GAWTC	2 cut(s)	1111, 1162
PkrI	GCNGC	1 cut(s)	844
Ppu21I	YACGTR	1 cut(s)	1225
Psp1406I	AACGTT	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	1180
PspGI	CCWGG	1 cut(s)	1180
PspN4I	GGNNCC	1 cut(s)	393
PsuI	RGATCY	1 cut(s)	550
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	3 cut(s)	209, 992, 1227
RsaNI	GTAC	3 cut(s)	208, 991, 1226
RseI	CAYNNNNRTG	3 cut(s)	383, 636, 1257
SaqAI	TTAA	2 cut(s)	230, 527
SatI	GCNGC	1 cut(s)	843
Sau3AI	GATC	5 cut(s)	342, 406, 442, 502, 550
ScrFI	CCNGG	1 cut(s)	1182
SduI	GDGCHC	1 cut(s)	1144
SfaNI	GCATC	5 cut(s)	94, 112, 158, 1016, 1167
SmiMI	CAYNNNNRTG	3 cut(s)	383, 636, 1257
Sse9I	AATT	5 cut(s)	66, 598, 837, 942, 1187
SsiI	CCGC	1 cut(s)	262
StyD4I	CCNGG	1 cut(s)	1180
StyI	CCWWGG	1 cut(s)	622
TaaI	ACNGT	5 cut(s)	714, 952, 995, 1218, 1259
TaiI	ACGT	2 cut(s)	330, 1227
TaqI	TCGA	1 cut(s)	1191
TasI	AATT	5 cut(s)	66, 598, 837, 942, 1187
TfiI	GAWTC	2 cut(s)	1111, 1162
Tru1I	TTAA	2 cut(s)	230, 527
Tru9I	TTAA	2 cut(s)	230, 527
TscAI	CASTG	5 cut(s)	88, 218, 385, 640, 1149
TseFI	GTSAC	1 cut(s)	788
TseI	GCWGC	1 cut(s)	842
Tsp45I	GTSAC	1 cut(s)	788
TspDTI	ATGAA	7 cut(s)	17, 401, 401, 525, 674, 877, 916
TspGWI	ACGGA	1 cut(s)	992
TspRI	CASTG	5 cut(s)	88, 218, 385, 640, 1149
XagI	CCTNNNNNAGG	1 cut(s)	1055
XapI	RAATTY	1 cut(s)	1187
XceI	RCATGY	4 cut(s)	147, 477, 499, 581
XmiI	GTMKAC	2 cut(s)	876, 1272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.