Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001650

Physical Location & Seq

Genomic Coordinates Forward (+)

7168992 .. 7169906

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0091600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGACAAGGTCGGGTCCTCTGAGGCCACTGGTTTCTGGTGTGAAATTTGTTTTAAGGCAGCAAGTACCTTTGCATAGGCAGATTCGGAGTCCCGTGTTGGTCTCTGATCGTGTTTTGAGTCCATCTCGTGTTTTAACTAATACAAGACCTTTGAGGCAGCCATTTTTAACTACTATAAGACCTGGTTGGTGCAGGTCTGTTCATGATGTTTCACTGGATGCTGTCCCTGGTGGTTTGTGGGTTGTGGCTTCTTTGTTATGTTCTTTGTTGGGTTTAATAGGGGCCGTGGTTGTCAGGCAAAACATAGGTAACTTGGTGCTTGCTGTTCGTCGTTATTGGAGGCTACTTTGCAATATATGGAGAGTTGCTCGCAATCATTGGGATCTCATATCTAAAGTGTGGGAATATATCAATACTAATTGGGACCAGATCTATAACTTTGTTTCAGCAAATTGGGGAACTATTTCGCAGATCTTGGAATATGTTTCAGCAAGCTGGGATAGTATTTTGCAGAGCTTGCAATATATTTCTACAAACTGGTACACTGTTCTCCAGGGTTGGGATTACATTTCCACCAACTTTGAAGTTGTTGAGCAGAGATTGGACTACATTTCGGCAAATAGGGAATACTTAATTGCCATTTGGCAGTGCCTTGTAGCTATCTGGAGGTTTGTTAGAGCTCTTAGGGTGGGCCTTGTAGTATGTTTTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

237

Amino Acids

27.5

Weight (kDa)

10.09

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37680 AT4G37680 AT4G37680 AT4G37680 AT4G37680 AT4G38320
fragaria_vesca	FvH4_1g17920 FvH4_1g17920 FvH4_1g17920 FvH4_5g20320 FvH4_5g20320 FvH4_5g20320
malus_domestica	MD02G1187800.v1.1 MD04G1053000.v1.1 MD06G1047400.v1.1 MD15G1298700.v1.1
prunus_persica	Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.6G219200_v2.0.a1 Prupe.6G219200_v2.0.a1
pyrus_communis	pycom02g15270 pycom04g04650 pycom06g04030 pycom15g26150
rosa_chinensis	RchiOBHm_Chr2g0108351 RchiOBHm_Chr7g0205491
rosa_laevigata	RLG00000003374 RLG00000017663
rosa_multiflora	Rmu_sc0002237.1_g000016 Rmu_sc0002372.1_g000016 Rmu_sc0041421.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135220 Rroxscaffold_3G00252180
rosa_rugosa	Rorug02G0152200 Rorug07G0091600 Rorug07G0091700
rosa_samantha	Rh2AG201200 Rh2BG214100 Rh2CG205500 Rh2DG208600 Rh7AG222300 Rh7BG217700 Rh7CG234700 Rh7DG228700
rosa_wichuraiana	Rw2G016020 Rw2G016080 Rw7G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	183
AclWI	GGATC	1 cut(s)	390
AcsI	RAATTY	1 cut(s)	44
AfaI	GTAC	2 cut(s)	66, 542
AfiI	CCNNNNNNNGG	1 cut(s)	559
AgsI	TTSAA	1 cut(s)	584
AjnI	CCWGG	3 cut(s)	181, 226, 552
AluBI	AGCT	4 cut(s)	495, 516, 659, 680
AluI	AGCT	4 cut(s)	495, 516, 659, 680
Alw21I	GWGCWC	1 cut(s)	682
Alw26I	GTCTC	1 cut(s)	106
AlwI	GGATC	1 cut(s)	390
AoxI	GGCC	3 cut(s)	23, 282, 691
ApeKI	GCWGC	2 cut(s)	58, 157
ApoI	RAATTY	1 cut(s)	44
Asp700I	GAANNNNTTC	1 cut(s)	463
AspS9I	GGNCC	4 cut(s)	14, 282, 424, 691
AvaII	GGWCC	2 cut(s)	14, 424
BanII	GRGCYC	1 cut(s)	682
BauI	CACGAG	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	682
BbvI	GCAGC	2 cut(s)	70, 169
BccI	CCATC	1 cut(s)	130
BceAI	ACGGC	1 cut(s)	269
BciT130I	CCWGG	3 cut(s)	183, 228, 554
BcoDI	GTCTC	1 cut(s)	106
BfuAI	ACCTGC	1 cut(s)	183
BglII	AGATCT	2 cut(s)	429, 471
BisI	GCNGC	2 cut(s)	59, 158
BlsI	GCNGC	2 cut(s)	60, 159
Bme1390I	CCNGG	3 cut(s)	183, 228, 554
Bme18I	GGWCC	2 cut(s)	14, 424
BmgT120I	GGNCC	4 cut(s)	14, 282, 424, 691
BmiI	GGNNCC	3 cut(s)	15, 283, 425
BmrFI	CCNGG	3 cut(s)	183, 228, 554
BmsI	GCATC	1 cut(s)	208
BplI	GAGNNNNNCTC	4 cut(s)	109, 141, 352, 384
BpmI	CTGGAG	2 cut(s)	536, 685
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	3 cut(s)	226, 285, 553
Bsc4I	CCNNNNNNNGG	1 cut(s)	559
Bse1I	ACTGG	3 cut(s)	33, 219, 542
BseBI	CCWGG	3 cut(s)	183, 228, 554
BseDI	CCNNGG	3 cut(s)	226, 285, 553
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	1 cut(s)	559
BseMII	CTCAG	1 cut(s)	11
BseNI	ACTGG	3 cut(s)	33, 219, 542
BseXI	GCAGC	2 cut(s)	70, 169
BseYI	CCCAGC	1 cut(s)	495
BsgI	GTGCAG	1 cut(s)	211
BshFI	GGCC	3 cut(s)	25, 284, 693
BsiHKAI	GWGCWC	1 cut(s)	682
BslFI	GGGAC	3 cut(s)	75, 209, 437
BslI	CCNNNNNNNGG	1 cut(s)	559
BsmAI	GTCTC	1 cut(s)	106
BsmFI	GGGAC	3 cut(s)	75, 209, 437
BsnI	GGCC	3 cut(s)	25, 284, 693
Bso31I	GGTCTC	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	682
Bsp143I	GATC	4 cut(s)	106, 382, 429, 471
BspANI	GGCC	3 cut(s)	25, 284, 693
BspCNI	CTCAG	1 cut(s)	12
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	3 cut(s)	15, 283, 425
BspMI	ACCTGC	1 cut(s)	183
BspPI	GGATC	1 cut(s)	390
BspTNI	GGTCTC	1 cut(s)	106
BsrI	ACTGG	3 cut(s)	33, 219, 542
BssECI	CCNNGG	3 cut(s)	226, 285, 553
BssMI	GATC	4 cut(s)	106, 382, 429, 471
BssSI	CACGAG	1 cut(s)	126
Bst2BI	CACGAG	1 cut(s)	126
Bst2UI	CCWGG	3 cut(s)	183, 228, 554
Bst4CI	ACNGT	1 cut(s)	547
BstAPI	GCANNNNNTGC	1 cut(s)	517
BstC8I	GCNNGC	4 cut(s)	321, 370, 493, 518
BstDEI	CTNAG	2 cut(s)	20, 683
BstDSI	CCRYGG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	4 cut(s)	109, 385, 432, 474
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	4 cut(s)	106, 382, 429, 471
BstMWI	GCNNNNNNNGC	1 cut(s)	517
BstNI	CCWGG	3 cut(s)	183, 228, 554
BstSCI	CCNGG	3 cut(s)	181, 226, 552
BstV1I	GCAGC	2 cut(s)	70, 169
BstX2I	RGATCY	3 cut(s)	382, 429, 471
BstYI	RGATCY	3 cut(s)	382, 429, 471
BsuRI	GGCC	3 cut(s)	25, 284, 693
BtgI	CCRYGG	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	223
BtsI	GCAGTG	1 cut(s)	653
BtsIMutI	CAGTG	4 cut(s)	26, 212, 543, 653
BveI	ACCTGC	1 cut(s)	183
Cac8I	GCNNGC	4 cut(s)	321, 370, 493, 518
CciI	TCATGA	1 cut(s)	202
Cfr13I	GGNCC	4 cut(s)	14, 282, 424, 691
CsiI	ACCWGGT	1 cut(s)	181
Csp6I	GTAC	2 cut(s)	65, 541
CspCI	CAANNNNNGTGG	2 cut(s)	562, 597
CviAII	CATG	1 cut(s)	203
CviQI	GTAC	2 cut(s)	65, 541
DdeI	CTNAG	2 cut(s)	20, 683
DpnI	GATC	4 cut(s)	108, 384, 431, 473
DpnII	GATC	4 cut(s)	106, 382, 429, 471
Ecl136II	GAGCTC	1 cut(s)	680
Eco24I	GRGCYC	1 cut(s)	682
Eco31I	GGTCTC	1 cut(s)	106
Eco47I	GGWCC	2 cut(s)	14, 424
Eco53kI	GAGCTC	1 cut(s)	680
EcoICRI	GAGCTC	1 cut(s)	680
EcoO109I	RGGNCCY	1 cut(s)	14
EcoRII	CCWGG	3 cut(s)	181, 226, 552
EcoT38I	GRGCYC	1 cut(s)	682
FaeI	CATG	1 cut(s)	206
FaqI	GGGAC	3 cut(s)	75, 209, 437
FatI	CATG	1 cut(s)	202
Fnu4HI	GCNGC	2 cut(s)	59, 158
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	682
Fsp4HI	GCNGC	2 cut(s)	59, 158
GluI	GCNGC	2 cut(s)	59, 158
GsaI	CCCAGC	1 cut(s)	499
GsuI	CTGGAG	2 cut(s)	536, 685
HaeIII	GGCC	3 cut(s)	25, 284, 693
Hin1II	CATG	1 cut(s)	206
HinfI	GANTC	3 cut(s)	82, 88, 118
Hpy166II	GTNNAC	1 cut(s)	543
Hpy188I	TCNGA	3 cut(s)	21, 87, 106
Hpy188III	TCNNGA	2 cut(s)	203, 664
Hpy8I	GTNNAC	1 cut(s)	543
Hpy99I	CGWCG	1 cut(s)	333
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4V	TGCA	5 cut(s)	73, 192, 351, 511, 520
HpyF10VI	GCNNNNNNNGC	1 cut(s)	517
HpyF3I	CTNAG	2 cut(s)	20, 683
Hsp92II	CATG	1 cut(s)	206
Kzo9I	GATC	4 cut(s)	106, 382, 429, 471
Lsp1109I	GCAGC	2 cut(s)	70, 169
LweI	GCATC	1 cut(s)	208
MabI	ACCWGGT	1 cut(s)	181
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	4 cut(s)	108, 384, 431, 473
MboI	GATC	4 cut(s)	106, 382, 429, 471
MflI	RGATCY	3 cut(s)	382, 429, 471
MhlI	GDGCHC	1 cut(s)	682
MluCI	AATT	4 cut(s)	44, 418, 451, 633
MlyI	GAGTC	2 cut(s)	97, 127
MnlI	CCTC	5 cut(s)	15, 27, 147, 333, 660
MroXI	GAANNNNTTC	1 cut(s)	463
MseI	TTAA	5 cut(s)	53, 134, 167, 275, 632
MspR9I	CCNGG	3 cut(s)	183, 228, 554
MvaI	CCWGG	3 cut(s)	183, 228, 554
MwoI	GCNNNNNNNGC	1 cut(s)	517
NdeII	GATC	4 cut(s)	106, 382, 429, 471
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	3 cut(s)	15, 283, 425
PagI	TCATGA	1 cut(s)	202
PdmI	GAANNNNTTC	1 cut(s)	463
PfeI	GAWTC	1 cut(s)	82
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	60, 159
PleI	GAGTC	2 cut(s)	96, 126
PpsI	GAGTC	2 cut(s)	96, 126
PpuMI	RGGWCCY	1 cut(s)	14
Psp124BI	GAGCTC	1 cut(s)	682
Psp5II	RGGWCCY	1 cut(s)	14
Psp6I	CCWGG	3 cut(s)	181, 226, 552
PspFI	CCCAGC	1 cut(s)	495
PspGI	CCWGG	3 cut(s)	181, 226, 552
PspN4I	GGNNCC	3 cut(s)	15, 283, 425
PspPI	GGNCC	4 cut(s)	14, 282, 424, 691
PspPPI	RGGWCCY	1 cut(s)	14
PsuI	RGATCY	3 cut(s)	382, 429, 471
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	2 cut(s)	66, 542
RsaNI	GTAC	2 cut(s)	65, 541
SacI	GAGCTC	1 cut(s)	682
SaqAI	TTAA	5 cut(s)	53, 134, 167, 275, 632
SatI	GCNGC	2 cut(s)	59, 158
Sau3AI	GATC	4 cut(s)	106, 382, 429, 471
Sau96I	GGNCC	4 cut(s)	14, 282, 424, 691
SchI	GAGTC	2 cut(s)	97, 127
ScrFI	CCNGG	3 cut(s)	183, 228, 554
SduI	GDGCHC	1 cut(s)	682
SexAI	ACCWGGT	1 cut(s)	181
SfaNI	GCATC	1 cut(s)	208
SinI	GGWCC	2 cut(s)	14, 424
Sse9I	AATT	4 cut(s)	44, 418, 451, 633
SstI	GAGCTC	1 cut(s)	682
StyD4I	CCNGG	3 cut(s)	181, 226, 552
TaaI	ACNGT	1 cut(s)	547
TasI	AATT	4 cut(s)	44, 418, 451, 633
TfiI	GAWTC	1 cut(s)	82
Tru1I	TTAA	5 cut(s)	53, 134, 167, 275, 632
Tru9I	TTAA	5 cut(s)	53, 134, 167, 275, 632
TscAI	CASTG	4 cut(s)	33, 219, 550, 653
TseI	GCWGC	2 cut(s)	58, 157
TspDTI	ATGAA	1 cut(s)	191
TspRI	CASTG	4 cut(s)	33, 219, 550, 653
Tth111I	GACNNNGTC	1 cut(s)	7
VpaK11BI	GGWCC	2 cut(s)	14, 424
XapI	RAATTY	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.