Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002237.1

Orthogroup ID

OG0001650

Physical Location & Seq

Genomic Coordinates Forward (+)

80163 .. 83444

Gene Structure 3282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002237.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

atgccttgcaccaacactaccgtcgcaccacccctgccgaatcacctccagcggtcgaccaccgtcgctccactcccgttccgctgctcgactaggttgtcctccaagcagatgatagatggtcgcacttctgataatgactgtgataaggaagagaagggaaagagactatggaagaaagtaaaatatcaacttattgagtaccattcattgcctatgttcttaagggacaatgagttcattctgggttattaccgatcagaatggccattgaagcaagtgtttctaagcatgttctctatccataatgaaactcttaatgtctggacgcatttgattggcttcttccttttccttttcctcaccatttacacagcaacaagagctccagacctcgtggatcttcattacctacaacgtttgcctgacatgattagaagtgctgatttccacaaaattcatccagaactgttgaattgcctcccttcattacctaacctgtctgattttaagacatctttgccatctatggattttctttcttcagtttcagggaatctagtggaacttgtcaccaattgcttgcctgagcgattatcccattcctaccaaaccgagaattctgttccgcacggagtaacagatgatgtgatgaacatggttgctccccttatggttcgaccaattacaaggtggcctttttttgtcttcttaggtggagccatgttctgcttgctagccagtagcacatgccacctccttgcttgccattcagcacgcctttcctacatcgttctaagatgtgactatgcaggcatcgctgcgctcattgcaacctccttttaccctcccgtttactattccttcatgtgcaaccccttcttttgcaatctgtacttgggattcataacaattcttggtattgccaccatggctttttccctccttccaatgtttcaaggacccaagttccgcagtactcgcgcctctctcttctttgggatgggcgtgtctggtgtggttcctttagttcataagcttatactgttccggaatcggcctgaggtcctccacactacttgttatgaggtgttaatgggagtcctctatggattgggcgcggtgatatatgctacaaggataccggagcggtggagaccaggaaagtttgacattgctggccacagtcaccaactttttcatatattggttgtggcaggagcttacacacattatcgagcaggactcgtctatctaagatggcgggacttacagggttgttataattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

429

Amino Acids

48.97

Weight (kDa)

8.89

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37680 AT4G37680 AT4G37680 AT4G37680 AT4G37680 AT4G38320
fragaria_vesca	FvH4_1g17920 FvH4_1g17920 FvH4_1g17920 FvH4_5g20320 FvH4_5g20320 FvH4_5g20320
malus_domestica	MD02G1187800.v1.1 MD04G1053000.v1.1 MD06G1047400.v1.1 MD15G1298700.v1.1
prunus_persica	Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.6G219200_v2.0.a1 Prupe.6G219200_v2.0.a1
pyrus_communis	pycom02g15270 pycom04g04650 pycom06g04030 pycom15g26150
rosa_chinensis	RchiOBHm_Chr2g0108351 RchiOBHm_Chr7g0205491
rosa_laevigata	RLG00000003374 RLG00000017663
rosa_multiflora	Rmu_sc0002237.1_g000016 Rmu_sc0002372.1_g000016 Rmu_sc0041421.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135220 Rroxscaffold_3G00252180
rosa_rugosa	Rorug02G0152200 Rorug07G0091600 Rorug07G0091700
rosa_samantha	Rh2AG201200 Rh2BG214100 Rh2CG205500 Rh2DG208600 Rh7AG222300 Rh7BG217700 Rh7CG234700 Rh7DG228700
rosa_wichuraiana	Rw2G016020 Rw2G016080 Rw7G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1284
AasI	GACNNNNNNGTC	1 cut(s)	97
AccBSI	CCGCTC	1 cut(s)	1150
AccI	GTMKAC	1 cut(s)	56
AccII	CGCG	2 cut(s)	984, 1121
AccIII	TCCGGA	1 cut(s)	1050
AciI	CCGC	7 cut(s)	52, 82, 629, 973, 1121, 1150, 1264
AclI	AACGTT	1 cut(s)	418
AclWI	GGATC	1 cut(s)	408
AcoI	YGGCCR	2 cut(s)	266, 1180
AcsI	RAATTY	2 cut(s)	456, 619
AcuI	CTGAAG	1 cut(s)	528
AfaI	GTAC	3 cut(s)	203, 896, 979
AflII	CTTAAG	1 cut(s)	223
AgsI	TTSAA	3 cut(s)	274, 475, 959
AjnI	CCWGG	1 cut(s)	1159
AloI	GAACNNNNNNTCC	2 cut(s)	221, 253
AluBI	AGCT	3 cut(s)	386, 1039, 1223
AluI	AGCT	3 cut(s)	386, 1039, 1223
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	2 cut(s)	160, 1150
AlwI	GGATC	1 cut(s)	408
Aor13HI	TCCGGA	1 cut(s)	1050
AoxI	GGCC	4 cut(s)	266, 695, 1058, 1180
ApeKI	GCWGC	2 cut(s)	84, 821
ApoI	RAATTY	2 cut(s)	456, 619
AspLEI	GCGC	3 cut(s)	826, 986, 1121
AspS9I	GGNCC	2 cut(s)	962, 1066
AsuHPI	GGTGA	5 cut(s)	35, 355, 565, 1135, 1181
AsuNHI	GCTAGC	1 cut(s)	736
AvaII	GGWCC	2 cut(s)	962, 1066
AxyI	CCTNAGG	1 cut(s)	1062
BalI	TGGCCA	2 cut(s)	268, 1182
BanII	GRGCYC	1 cut(s)	388
BauI	CACGAG	1 cut(s)	395
BbsI	GAAGAC	1 cut(s)	700
Bbv12I	GWGCWC	1 cut(s)	388
BbvI	GCAGC	2 cut(s)	71, 808
BccI	CCATC	4 cut(s)	113, 532, 997, 1254
BciT130I	CCWGG	1 cut(s)	1161
BciVI	GTATCC	1 cut(s)	1134
BcoDI	GTCTC	2 cut(s)	160, 1150
BfaI	CTAG	3 cut(s)	93, 560, 737
BfrI	CTTAAG	1 cut(s)	223
BfuI	GTATCC	1 cut(s)	1134
BglI	GCCNNNNNGGC	1 cut(s)	932
BisI	GCNGC	2 cut(s)	85, 822
BlsI	GCNGC	2 cut(s)	86, 823
BmcAI	AGTACT	1 cut(s)	979
Bme1390I	CCNGG	1 cut(s)	1161
Bme18I	GGWCC	2 cut(s)	962, 1066
BmgT120I	GGNCC	2 cut(s)	962, 1066
BmiI	GGNNCC	3 cut(s)	721, 964, 1023
BmrFI	CCNGG	1 cut(s)	1161
BmsI	GCATC	1 cut(s)	825
BmtI	GCTAGC	1 cut(s)	740
BoxI	GACNNNNGTC	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	700
BplI	GAGNNNNNCTC	2 cut(s)	1230, 1262
BpmI	CTGGAG	2 cut(s)	32, 372
Bpu10I	CCTNAGC	1 cut(s)	588
BsaI	GGTCTC	1 cut(s)	1150
BsaJI	CCNNGG	1 cut(s)	930
BsaWI	WCCGGW	2 cut(s)	1050, 1144
BsaXI	ACNNNNNCTCC	4 cut(s)	52, 82, 370, 400
Bse1I	ACTGG	1 cut(s)	741
Bse21I	CCTNAGG	1 cut(s)	1062
Bse3DI	GCAATG	3 cut(s)	209, 828, 1173
BseAI	TCCGGA	1 cut(s)	1050
BseBI	CCWGG	1 cut(s)	1161
BseDI	CCNNGG	1 cut(s)	930
BseGI	GGATG	2 cut(s)	460, 1008
BseMI	GCAATG	3 cut(s)	209, 828, 1173
BseMII	CTCAG	2 cut(s)	579, 1053
BseNI	ACTGG	1 cut(s)	741
BseXI	GCAGC	2 cut(s)	71, 808
Bsh1236I	CGCG	2 cut(s)	984, 1121
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	4 cut(s)	268, 697, 1060, 1182
BsiEI	CGRYCG	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	388
BsiSI	CCGG	2 cut(s)	1051, 1145
BslFI	GGGAC	2 cut(s)	242, 1280
BsmAI	GTCTC	2 cut(s)	160, 1150
BsmFI	GGGAC	2 cut(s)	242, 1280
BsnI	GGCC	4 cut(s)	268, 697, 1060, 1182
Bso31I	GGTCTC	1 cut(s)	1150
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp13I	TCCGGA	1 cut(s)	1050
Bsp143I	GATC	2 cut(s)	257, 400
Bsp19I	CCATGG	1 cut(s)	930
BspACI	CCGC	7 cut(s)	52, 82, 629, 973, 1121, 1150, 1264
BspANI	GGCC	4 cut(s)	268, 697, 1060, 1182
BspCNI	CTCAG	2 cut(s)	580, 1054
BspEI	TCCGGA	1 cut(s)	1050
BspFNI	CGCG	2 cut(s)	984, 1121
BspLI	GGNNCC	3 cut(s)	721, 964, 1023
BspOI	GCTAGC	1 cut(s)	740
BspPI	GGATC	1 cut(s)	408
BspTI	CTTAAG	1 cut(s)	223
BspTNI	GGTCTC	1 cut(s)	1150
BsrBI	CCGCTC	1 cut(s)	1150
BsrDI	GCAATG	3 cut(s)	209, 828, 1173
BsrI	ACTGG	1 cut(s)	741
BssECI	CCNNGG	1 cut(s)	930
BssMI	GATC	2 cut(s)	257, 400
BssSI	CACGAG	1 cut(s)	395
BssT1I	CCWWGG	1 cut(s)	930
Bst2BI	CACGAG	1 cut(s)	395
Bst2UI	CCWGG	1 cut(s)	1161
Bst4CI	ACNGT	6 cut(s)	22, 64, 143, 471, 1047, 1187
Bst6I	CTCTTC	2 cut(s)	147, 998
BstAFI	CTTAAG	1 cut(s)	223
BstC8I	GCNNGC	7 cut(s)	584, 734, 738, 766, 778, 814, 1180
BstDEI	CTNAG	6 cut(s)	287, 588, 712, 797, 1062, 1256
BstDSI	CCRYGG	1 cut(s)	930
BstF5I	GGATG	2 cut(s)	460, 1008
BstFNI	CGCG	2 cut(s)	984, 1121
BstHHI	GCGC	3 cut(s)	826, 986, 1121
BstKTI	GATC	2 cut(s)	260, 403
BstMAI	GTCTC	2 cut(s)	160, 1150
BstMBI	GATC	2 cut(s)	257, 400
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	6 cut(s)	274, 383, 818, 830, 932, 981
BstNI	CCWGG	1 cut(s)	1161
BstNSI	RCATGY	2 cut(s)	295, 753
BstPAI	GACNNNNGTC	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	1159
BstUI	CGCG	2 cut(s)	984, 1121
BstV1I	GCAGC	2 cut(s)	71, 808
BstV2I	GAAGAC	1 cut(s)	700
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
Bsu36I	CCTNAGG	1 cut(s)	1062
BsuI	GTATCC	1 cut(s)	1134
BsuRI	GGCC	4 cut(s)	268, 697, 1060, 1182
BtgI	CCRYGG	1 cut(s)	930
BtgZI	GCGATG	1 cut(s)	802
BtsCI	GGATG	2 cut(s)	460, 1008
Cac8I	GCNNGC	7 cut(s)	584, 734, 738, 766, 778, 814, 1180
CfoI	GCGC	3 cut(s)	826, 986, 1121
Cfr13I	GGNCC	2 cut(s)	962, 1066
CseI	GACGC	1 cut(s)	337
Csp6I	GTAC	3 cut(s)	202, 895, 978
CspCI	CAANNNNNGTGG	2 cut(s)	1061, 1096
CviAII	CATG	7 cut(s)	292, 430, 658, 724, 750, 868, 931
CviQI	GTAC	3 cut(s)	202, 895, 978
DdeI	CTNAG	6 cut(s)	287, 588, 712, 797, 1062, 1256
DpnI	GATC	2 cut(s)	259, 402
DpnII	GATC	2 cut(s)	257, 400
DrdI	GACNNNNNNGTC	1 cut(s)	97
DseDI	GACNNNNNNGTC	1 cut(s)	97
EaeI	YGGCCR	2 cut(s)	266, 1180
Eam1104I	CTCTTC	2 cut(s)	147, 998
EarI	CTCTTC	2 cut(s)	147, 998
Ecl136II	GAGCTC	1 cut(s)	386
Eco130I	CCWWGG	1 cut(s)	930
Eco24I	GRGCYC	1 cut(s)	388
Eco31I	GGTCTC	1 cut(s)	1150
Eco47I	GGWCC	2 cut(s)	962, 1066
Eco53kI	GAGCTC	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	528
Eco81I	CCTNAGG	1 cut(s)	1062
EcoICRI	GAGCTC	1 cut(s)	386
EcoO109I	RGGNCCY	2 cut(s)	962, 1066
EcoRI	GAATTC	1 cut(s)	619
EcoRII	CCWGG	1 cut(s)	1159
EcoT14I	CCWWGG	1 cut(s)	930
EcoT38I	GRGCYC	1 cut(s)	388
ErhI	CCWWGG	1 cut(s)	930
FaeI	CATG	7 cut(s)	295, 433, 661, 727, 753, 871, 934
FalI	AAGNNNNNCTT	2 cut(s)	682, 714
FaqI	GGGAC	2 cut(s)	242, 1280
FatI	CATG	7 cut(s)	291, 429, 657, 723, 749, 867, 930
FauI	CCCGC	1 cut(s)	1257
FblI	GTMKAC	1 cut(s)	56
Fnu4HI	GCNGC	2 cut(s)	85, 822
FokI	GGATG	2 cut(s)	447, 1015
FriOI	GRGCYC	1 cut(s)	388
Fsp4HI	GCNGC	2 cut(s)	85, 822
FspBI	CTAG	3 cut(s)	93, 560, 737
GlaI	GCGC	3 cut(s)	825, 985, 1120
GluI	GCNGC	2 cut(s)	85, 822
GsuI	CTGGAG	2 cut(s)	32, 372
HaeIII	GGCC	4 cut(s)	268, 697, 1060, 1182
HapII	CCGG	2 cut(s)	1051, 1145
HgaI	GACGC	1 cut(s)	337
HhaI	GCGC	3 cut(s)	826, 986, 1121
Hin1II	CATG	7 cut(s)	295, 433, 661, 727, 753, 871, 934
Hin6I	GCGC	3 cut(s)	824, 984, 1119
HinP1I	GCGC	3 cut(s)	824, 984, 1119
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HindIII	AAGCTT	1 cut(s)	1037
HinfI	GANTC	6 cut(s)	40, 556, 903, 1054, 1101, 1245
HpaII	CCGG	2 cut(s)	1051, 1145
HphI	GGTGA	5 cut(s)	35, 355, 565, 1135, 1181
Hpy166II	GTNNAC	2 cut(s)	57, 856
Hpy188I	TCNGA	3 cut(s)	133, 262, 505
Hpy188III	TCNNGA	4 cut(s)	325, 389, 464, 1051
Hpy8I	GTNNAC	2 cut(s)	57, 856
Hpy99I	CGWCG	2 cut(s)	26, 68
HpyAV	CCTTC	5 cut(s)	151, 495, 874, 889, 956
HpyCH4III	ACNGT	6 cut(s)	22, 64, 143, 471, 1047, 1187
HpyCH4IV	ACGT	1 cut(s)	418
HpyCH4V	TGCA	5 cut(s)	9, 812, 833, 873, 888
HpyF10VI	GCNNNNNNNGC	6 cut(s)	274, 383, 818, 830, 932, 981
HpyF3I	CTNAG	6 cut(s)	287, 588, 712, 797, 1062, 1256
HpySE526I	ACGT	1 cut(s)	418
Hsp92II	CATG	7 cut(s)	295, 433, 661, 727, 753, 871, 934
HspAI	GCGC	3 cut(s)	824, 984, 1119
Kpn2I	TCCGGA	1 cut(s)	1050
Kzo9I	GATC	2 cut(s)	257, 400
LmnI	GCTCC	6 cut(s)	73, 391, 670, 719, 1147, 1220
Lsp1109I	GCAGC	2 cut(s)	71, 808
LweI	GCATC	1 cut(s)	825
MaeI	CTAG	3 cut(s)	93, 560, 737
MaeII	ACGT	1 cut(s)	418
MaeIII	GTNAC	4 cut(s)	571, 637, 803, 1187
MalI	GATC	2 cut(s)	259, 402
MbiI	CCGCTC	1 cut(s)	1150
MboI	GATC	2 cut(s)	257, 400
MboII	GAAGA	7 cut(s)	164, 187, 337, 395, 534, 700, 985
MfeI	CAATTG	1 cut(s)	577
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	1 cut(s)	388
MlsI	TGGCCA	2 cut(s)	268, 1182
MluCI	AATT	7 cut(s)	456, 475, 577, 619, 684, 912, 1285
MluNI	TGGCCA	2 cut(s)	268, 1182
MlyI	GAGTC	2 cut(s)	1110, 1239
Mox20I	TGGCCA	2 cut(s)	268, 1182
MroI	TCCGGA	1 cut(s)	1050
MscI	TGGCCA	2 cut(s)	268, 1182
MseI	TTAA	4 cut(s)	224, 318, 510, 1094
Msp20I	TGGCCA	2 cut(s)	268, 1182
MspA1I	CMGCKG	2 cut(s)	52, 84
MspCI	CTTAAG	1 cut(s)	223
MspI	CCGG	2 cut(s)	1051, 1145
MspR9I	CCNGG	1 cut(s)	1161
MunI	CAATTG	1 cut(s)	577
MvaI	CCWGG	1 cut(s)	1161
MvnI	CGCG	2 cut(s)	984, 1121
MwoI	GCNNNNNNNGC	6 cut(s)	274, 383, 818, 830, 932, 981
NcoI	CCATGG	1 cut(s)	930
NdeII	GATC	2 cut(s)	257, 400
NheI	GCTAGC	1 cut(s)	736
NlaIII	CATG	7 cut(s)	295, 433, 661, 727, 753, 871, 934
NlaIV	GGNNCC	3 cut(s)	721, 964, 1023
NmuCI	GTSAC	3 cut(s)	571, 803, 1187
NspI	RCATGY	2 cut(s)	295, 753
PfeI	GAWTC	4 cut(s)	40, 556, 903, 1054
PkrI	GCNGC	2 cut(s)	86, 823
PleI	GAGTC	2 cut(s)	1109, 1239
PpsI	GAGTC	2 cut(s)	1109, 1239
PpuMI	RGGWCCY	2 cut(s)	962, 1066
PshAI	GACNNNNGTC	1 cut(s)	62
PsiI	TTATAA	1 cut(s)	1284
Psp124BI	GAGCTC	1 cut(s)	388
Psp1406I	AACGTT	1 cut(s)	418
Psp5II	RGGWCCY	2 cut(s)	962, 1066
Psp6I	CCWGG	1 cut(s)	1159
PspGI	CCWGG	1 cut(s)	1159
PspN4I	GGNNCC	3 cut(s)	721, 964, 1023
PspPI	GGNCC	2 cut(s)	962, 1066
PspPPI	RGGWCCY	2 cut(s)	962, 1066
PsuI	RGATCY	1 cut(s)	400
RsaI	GTAC	3 cut(s)	203, 896, 979
RsaNI	GTAC	3 cut(s)	202, 895, 978
SacI	GAGCTC	1 cut(s)	388
SalI	GTCGAC	1 cut(s)	55
SaqAI	TTAA	4 cut(s)	224, 318, 510, 1094
SatI	GCNGC	2 cut(s)	85, 822
Sau3AI	GATC	2 cut(s)	257, 400
Sau96I	GGNCC	2 cut(s)	962, 1066
ScaI	AGTACT	1 cut(s)	979
SchI	GAGTC	2 cut(s)	1110, 1239
ScrFI	CCNGG	1 cut(s)	1161
SduI	GDGCHC	1 cut(s)	388
SfaNI	GCATC	1 cut(s)	825
SinI	GGWCC	2 cut(s)	962, 1066
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
Sse9I	AATT	7 cut(s)	456, 475, 577, 619, 684, 912, 1285
SsiI	CCGC	7 cut(s)	52, 82, 629, 973, 1121, 1150, 1264
SspMI	CTAG	3 cut(s)	93, 560, 737
SstI	GAGCTC	1 cut(s)	388
StyD4I	CCNGG	1 cut(s)	1159
StyI	CCWWGG	1 cut(s)	930
TaaI	ACNGT	6 cut(s)	22, 64, 143, 471, 1047, 1187
TaiI	ACGT	1 cut(s)	421
TaqI	TCGA	4 cut(s)	56, 89, 679, 1237
TasI	AATT	7 cut(s)	456, 475, 577, 619, 684, 912, 1285
TatI	WGTACW	2 cut(s)	894, 977
TfiI	GAWTC	4 cut(s)	40, 556, 903, 1054
Tru1I	TTAA	4 cut(s)	224, 318, 510, 1094
Tru9I	TTAA	4 cut(s)	224, 318, 510, 1094
TseFI	GTSAC	3 cut(s)	571, 803, 1187
TseI	GCWGC	2 cut(s)	84, 821
Tsp45I	GTSAC	3 cut(s)	571, 803, 1187
TspGWI	ACGGA	1 cut(s)	648
Vha464I	CTTAAG	1 cut(s)	223
VpaK11BI	GGWCC	2 cut(s)	962, 1066
XapI	RAATTY	2 cut(s)	456, 619
XceI	RCATGY	2 cut(s)	295, 753
XcmI	CCANNNNNNNNNTGG	1 cut(s)	690
XmiI	GTMKAC	1 cut(s)	56
XspI	CTAG	3 cut(s)	93, 560, 737
ZrmI	AGTACT	1 cut(s)	979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.