Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001650

Physical Location & Seq

Genomic Coordinates Reverse (-)

11996407 .. 11999527

Gene Structure 3121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g20320.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGATAGATGGTTGCACTTCCGATACTGACTTTGACAAGGAAGGGAAGGGAAAGAGACTATGGAAGAAAGTAAAATATCAGCTTATTGAATACCATTCATTGCCTATGTTCTTAAGGGACAATGAGTTCATTCTGGGTTACTACCGATCAGAATGGCCATTGAAGCAAGTGTTTCTAAGCATGTTTTCTATCCACAATGAAACTCTTAATGTCTGGACGCATTTGATTGGCTTCTTCCTTTTCCTTTTCCTCACCATTTACACAGCAACAAGAGCTCCGGAAATCATTGATCTGCATTACCTGCAACGTTTGCCTGACATGATTAGAAGTGCCGATTTCCACAAAATTCATCCAGAACTGTTGAATTGCCTTCCTTCACTACCCAACCTGTCTGATTTTAAGACATCTCTGCCATCTATGGATTTTCTTTCTTCAGTTTCAGGGAATCTAGTGGAACTTGTCACCAATTGCTTGCCTGAGCGGTTATCACATTCCTACCAAGCCGACAATTCTGTACCGCATGGAGTAACAGATGATGTGATGGACATGGTTGCTCCCCTTATGGTTCGGCCAATTACAAGGTGGCCTTTCTTTGCCTTCTTAGGTGGAGCCATGTTCTGCTTGCTAGCCAGTAGCGCATGCCACCTCCTTGCTTGCCATTCGGCACGCCTTTCGTACATTGTTCTGAGGTGTGACTATGCAGGCATCGCTGCACTCATTGCAACCTCGTTTTACCCTCCCGTCTACTACTCATTCATGTGCAACCCCTTCTTTTGCAATCTCTACTTGGGATTCATAACAATTCTTGGTATTGCCACCATTGCTTTTTCCCTCCTGCCAATGTTTCAAGGACCCAAGTTCCGCAGTACTCGCGCCTCTCTCTTCTTTGGGATGGGTGTGTCTGGTGTGGTTCCTTTAGTTCATAAGCTCATATTGTTCCGGAATCGGCCTGAGGTCCTGCAGACTACTTGTTACGAGGTGTTAATGGGAGTCCTCTATGGATTGGGGGCTGTGATTTATGCCACAAGGATACCTGAGCGGTGGAGACCAGGAAAGTTCGACATTGCCGGCCACAGTCACCAACTGTTTCATATATTGGTTGTGGCAGCAGCTTACACGCATTATCAAGCAGGACTCGTCTATTTAAGATGGCGGGACTTGCAGGGTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

391

Amino Acids

44.45

Weight (kDa)

8.24

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HlyIII	PF03006	71 - 99	2.3e-06	Haemolysin-III related
HlyIII	PF03006	199 - 384	3.7e-55	Haemolysin-III related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37680 AT4G37680 AT4G37680 AT4G37680 AT4G37680 AT4G38320
fragaria_vesca	FvH4_1g17920 FvH4_1g17920 FvH4_1g17920 FvH4_5g20320 FvH4_5g20320 FvH4_5g20320
malus_domestica	MD02G1187800.v1.1 MD04G1053000.v1.1 MD06G1047400.v1.1 MD15G1298700.v1.1
prunus_persica	Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.6G219200_v2.0.a1 Prupe.6G219200_v2.0.a1
pyrus_communis	pycom02g15270 pycom04g04650 pycom06g04030 pycom15g26150
rosa_chinensis	RchiOBHm_Chr2g0108351 RchiOBHm_Chr7g0205491
rosa_laevigata	RLG00000003374 RLG00000017663
rosa_multiflora	Rmu_sc0002237.1_g000016 Rmu_sc0002372.1_g000016 Rmu_sc0041421.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135220 Rroxscaffold_3G00252180
rosa_rugosa	Rorug02G0152200 Rorug07G0091600 Rorug07G0091700
rosa_samantha	Rh2AG201200 Rh2BG214100 Rh2CG205500 Rh2DG208600 Rh7AG222300 Rh7BG217700 Rh7CG234700 Rh7DG228700
rosa_wichuraiana	Rw2G016020 Rw2G016080 Rw7G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	309
AccBSI	CCGCTC	2 cut(s)	481, 1039
AccI	GTMKAC	1 cut(s)	744
AccII	CGCG	1 cut(s)	873
AccIII	TCCGGA	2 cut(s)	277, 939
AciI	CCGC	5 cut(s)	481, 518, 862, 1039, 1153
AclI	AACGTT	1 cut(s)	307
AcoI	YGGCCR	3 cut(s)	155, 569, 1069
AcsI	RAATTY	1 cut(s)	345
AcuI	CTGAAG	1 cut(s)	417
AfaI	GTAC	3 cut(s)	516, 677, 868
AflII	CTTAAG	1 cut(s)	112
AgsI	TTSAA	4 cut(s)	89, 163, 364, 848
AjnI	CCWGG	1 cut(s)	1048
AloI	GAACNNNNNNTCC	2 cut(s)	110, 142
AluBI	AGCT	4 cut(s)	82, 275, 928, 1112
AluI	AGCT	4 cut(s)	82, 275, 928, 1112
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	2 cut(s)	49, 1039
Aor13HI	TCCGGA	2 cut(s)	277, 939
AoxI	GGCC	5 cut(s)	155, 569, 584, 947, 1069
ApeKI	GCWGC	3 cut(s)	710, 1106, 1109
ApoI	RAATTY	1 cut(s)	345
AspLEI	GCGC	2 cut(s)	638, 875
AspS9I	GGNCC	2 cut(s)	851, 955
AsuHPI	GGTGA	3 cut(s)	244, 454, 1070
AsuNHI	GCTAGC	1 cut(s)	625
AvaII	GGWCC	2 cut(s)	851, 955
AxyI	CCTNAGG	1 cut(s)	951
BalI	TGGCCA	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	277
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	3 cut(s)	697, 1118, 1121
BccI	CCATC	5 cut(s)	2, 421, 535, 886, 1143
BcgI	CGANNNNNNTGC	2 cut(s)	654, 688
BciT130I	CCWGG	1 cut(s)	1050
BciVI	GTATCC	1 cut(s)	1023
BcoDI	GTCTC	2 cut(s)	49, 1039
BfaI	CTAG	2 cut(s)	449, 626
BfmI	CTRYAG	1 cut(s)	959
BfrI	CTTAAG	1 cut(s)	112
BfuAI	ACCTGC	1 cut(s)	309
BfuI	GTATCC	1 cut(s)	1023
BisI	GCNGC	3 cut(s)	711, 1107, 1110
BlsI	GCNGC	3 cut(s)	712, 1108, 1111
BmcAI	AGTACT	1 cut(s)	868
Bme1390I	CCNGG	1 cut(s)	1050
Bme18I	GGWCC	2 cut(s)	851, 955
BmgT120I	GGNCC	2 cut(s)	851, 955
BmiI	GGNNCC	3 cut(s)	610, 853, 912
BmrFI	CCNGG	1 cut(s)	1050
BmsI	GCATC	1 cut(s)	714
BmtI	GCTAGC	1 cut(s)	629
Bpu10I	CCTNAGC	2 cut(s)	477, 1035
BsaI	GGTCTC	1 cut(s)	1039
BsaWI	WCCGGW	2 cut(s)	277, 939
BsaXI	ACNNNNNCTCC	2 cut(s)	259, 289
Bse118I	RCCGGY	1 cut(s)	1067
Bse1I	ACTGG	1 cut(s)	630
Bse21I	CCTNAGG	1 cut(s)	951
Bse3DI	GCAATG	4 cut(s)	98, 717, 819, 1062
BseAI	TCCGGA	2 cut(s)	277, 939
BseBI	CCWGG	1 cut(s)	1050
BseGI	GGATG	2 cut(s)	349, 897
BseMI	GCAATG	4 cut(s)	98, 717, 819, 1062
BseMII	CTCAG	4 cut(s)	468, 677, 942, 1026
BseNI	ACTGG	1 cut(s)	630
BseXI	GCAGC	3 cut(s)	697, 1118, 1121
BsgI	GTGCAG	1 cut(s)	696
Bsh1236I	CGCG	1 cut(s)	873
BshFI	GGCC	5 cut(s)	157, 571, 586, 949, 1071
BsiHKAI	GWGCWC	1 cut(s)	277
BsiSI	CCGG	3 cut(s)	278, 940, 1068
BslFI	GGGAC	2 cut(s)	131, 1169
BsmAI	GTCTC	2 cut(s)	49, 1039
BsmFI	GGGAC	2 cut(s)	131, 1169
BsnI	GGCC	5 cut(s)	157, 571, 586, 949, 1071
Bso31I	GGTCTC	1 cut(s)	1039
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp13I	TCCGGA	2 cut(s)	277, 939
Bsp143I	GATC	2 cut(s)	146, 289
BspACI	CCGC	5 cut(s)	481, 518, 862, 1039, 1153
BspANI	GGCC	5 cut(s)	157, 571, 586, 949, 1071
BspCNI	CTCAG	4 cut(s)	469, 678, 943, 1027
BspEI	TCCGGA	2 cut(s)	277, 939
BspFNI	CGCG	1 cut(s)	873
BspLI	GGNNCC	3 cut(s)	610, 853, 912
BspMAI	CTGCAG	1 cut(s)	963
BspMI	ACCTGC	1 cut(s)	309
BspOI	GCTAGC	1 cut(s)	629
BspTI	CTTAAG	1 cut(s)	112
BspTNI	GGTCTC	1 cut(s)	1039
BsrBI	CCGCTC	2 cut(s)	481, 1039
BsrDI	GCAATG	4 cut(s)	98, 717, 819, 1062
BsrFI	RCCGGY	1 cut(s)	1067
BsrI	ACTGG	1 cut(s)	630
BssAI	RCCGGY	1 cut(s)	1067
BssMI	GATC	2 cut(s)	146, 289
Bst2UI	CCWGG	1 cut(s)	1050
Bst4CI	ACNGT	3 cut(s)	360, 1076, 1086
Bst6I	CTCTTC	1 cut(s)	887
BstAFI	CTTAAG	1 cut(s)	112
BstAPI	GCANNNNNTGC	3 cut(s)	301, 310, 719
BstC8I	GCNNGC	8 cut(s)	473, 623, 627, 640, 655, 667, 703, 1069
BstDEI	CTNAG	6 cut(s)	176, 477, 601, 686, 951, 1035
BstF5I	GGATG	2 cut(s)	349, 897
BstFNI	CGCG	1 cut(s)	873
BstHHI	GCGC	2 cut(s)	638, 875
BstKTI	GATC	2 cut(s)	149, 292
BstMAI	GTCTC	2 cut(s)	49, 1039
BstMBI	GATC	2 cut(s)	146, 289
BstNI	CCWGG	1 cut(s)	1050
BstNSI	RCATGY	2 cut(s)	184, 642
BstSCI	CCNGG	1 cut(s)	1048
BstSFI	CTRYAG	1 cut(s)	959
BstUI	CGCG	1 cut(s)	873
BstV1I	GCAGC	3 cut(s)	697, 1118, 1121
Bsu36I	CCTNAGG	1 cut(s)	951
BsuI	GTATCC	1 cut(s)	1023
BsuRI	GGCC	5 cut(s)	157, 571, 586, 949, 1071
BtgZI	GCGATG	1 cut(s)	691
BtsCI	GGATG	2 cut(s)	349, 897
BveI	ACCTGC	1 cut(s)	309
Cac8I	GCNNGC	8 cut(s)	473, 623, 627, 640, 655, 667, 703, 1069
CfoI	GCGC	2 cut(s)	638, 875
Cfr10I	RCCGGY	1 cut(s)	1067
Cfr13I	GGNCC	2 cut(s)	851, 955
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	3 cut(s)	515, 676, 867
CviAII	CATG	7 cut(s)	181, 319, 521, 547, 613, 639, 757
CviQI	GTAC	3 cut(s)	515, 676, 867
DdeI	CTNAG	6 cut(s)	176, 477, 601, 686, 951, 1035
DpnI	GATC	2 cut(s)	148, 291
DpnII	GATC	2 cut(s)	146, 289
EaeI	YGGCCR	3 cut(s)	155, 569, 1069
Eam1104I	CTCTTC	1 cut(s)	887
EarI	CTCTTC	1 cut(s)	887
Ecl136II	GAGCTC	1 cut(s)	275
Eco24I	GRGCYC	1 cut(s)	277
Eco31I	GGTCTC	1 cut(s)	1039
Eco47I	GGWCC	2 cut(s)	851, 955
Eco53kI	GAGCTC	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	417
Eco81I	CCTNAGG	1 cut(s)	951
EcoICRI	GAGCTC	1 cut(s)	275
EcoO109I	RGGNCCY	2 cut(s)	851, 955
EcoRII	CCWGG	1 cut(s)	1048
EcoT38I	GRGCYC	1 cut(s)	277
FaeI	CATG	7 cut(s)	184, 322, 524, 550, 616, 642, 760
FalI	AAGNNNNNCTT	2 cut(s)	571, 603
FaqI	GGGAC	2 cut(s)	131, 1169
FatI	CATG	7 cut(s)	180, 318, 520, 546, 612, 638, 756
FauI	CCCGC	1 cut(s)	1146
FblI	GTMKAC	1 cut(s)	744
Fnu4HI	GCNGC	3 cut(s)	711, 1107, 1110
FokI	GGATG	2 cut(s)	336, 904
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	3 cut(s)	711, 1107, 1110
FspBI	CTAG	2 cut(s)	449, 626
GlaI	GCGC	2 cut(s)	637, 874
GluI	GCNGC	3 cut(s)	711, 1107, 1110
HaeIII	GGCC	5 cut(s)	157, 571, 586, 949, 1071
HapII	CCGG	3 cut(s)	278, 940, 1068
HgaI	GACGC	1 cut(s)	226
HhaI	GCGC	2 cut(s)	638, 875
Hin1II	CATG	7 cut(s)	184, 322, 524, 550, 616, 642, 760
Hin6I	GCGC	2 cut(s)	636, 873
HinP1I	GCGC	2 cut(s)	636, 873
HinfI	GANTC	5 cut(s)	445, 792, 943, 990, 1134
HpaII	CCGG	3 cut(s)	278, 940, 1068
HphI	GGTGA	3 cut(s)	244, 454, 1070
Hpy166II	GTNNAC	1 cut(s)	745
Hpy188I	TCNGA	4 cut(s)	22, 151, 394, 687
Hpy188III	TCNNGA	4 cut(s)	214, 278, 353, 940
Hpy8I	GTNNAC	1 cut(s)	745
HpyAV	CCTTC	6 cut(s)	35, 40, 380, 384, 607, 778
HpyCH4III	ACNGT	3 cut(s)	360, 1076, 1086
HpyCH4IV	ACGT	1 cut(s)	307
HpyF3I	CTNAG	6 cut(s)	176, 477, 601, 686, 951, 1035
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	7 cut(s)	184, 322, 524, 550, 616, 642, 760
HspAI	GCGC	2 cut(s)	636, 873
Kpn2I	TCCGGA	2 cut(s)	277, 939
KroI	GCCGGC	1 cut(s)	1067
KroNI	GCCGGC	1 cut(s)	1069
Kzo9I	GATC	2 cut(s)	146, 289
LmnI	GCTCC	3 cut(s)	280, 559, 608
Lsp1109I	GCAGC	3 cut(s)	697, 1118, 1121
LweI	GCATC	1 cut(s)	714
MaeI	CTAG	2 cut(s)	449, 626
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	6 cut(s)	137, 460, 526, 692, 971, 1076
MalI	GATC	2 cut(s)	148, 291
MbiI	CCGCTC	2 cut(s)	481, 1039
MboI	GATC	2 cut(s)	146, 289
MboII	GAAGA	4 cut(s)	76, 226, 423, 874
MfeI	CAATTG	1 cut(s)	466
MhlI	GDGCHC	1 cut(s)	277
MlsI	TGGCCA	1 cut(s)	157
MluCI	AATT	6 cut(s)	345, 364, 466, 508, 573, 801
MluNI	TGGCCA	1 cut(s)	157
MlyI	GAGTC	2 cut(s)	999, 1128
Mox20I	TGGCCA	1 cut(s)	157
MroI	TCCGGA	2 cut(s)	277, 939
MroNI	GCCGGC	1 cut(s)	1067
MscI	TGGCCA	1 cut(s)	157
MseI	TTAA	5 cut(s)	113, 207, 399, 983, 1145
MslI	CAYNNNNRTG	1 cut(s)	757
Msp20I	TGGCCA	1 cut(s)	157
MspCI	CTTAAG	1 cut(s)	112
MspI	CCGG	3 cut(s)	278, 940, 1068
MspR9I	CCNGG	1 cut(s)	1050
MunI	CAATTG	1 cut(s)	466
MvaI	CCWGG	1 cut(s)	1050
MvnI	CGCG	1 cut(s)	873
NaeI	GCCGGC	1 cut(s)	1069
NdeII	GATC	2 cut(s)	146, 289
NgoMIV	GCCGGC	1 cut(s)	1067
NheI	GCTAGC	1 cut(s)	625
NlaIII	CATG	7 cut(s)	184, 322, 524, 550, 616, 642, 760
NlaIV	GGNNCC	3 cut(s)	610, 853, 912
NmuCI	GTSAC	3 cut(s)	460, 692, 1076
NspI	RCATGY	2 cut(s)	184, 642
PaeI	GCATGC	1 cut(s)	642
PdiI	GCCGGC	1 cut(s)	1069
PfeI	GAWTC	3 cut(s)	445, 792, 943
PkrI	GCNGC	3 cut(s)	712, 1108, 1111
PleI	GAGTC	2 cut(s)	998, 1128
PpsI	GAGTC	2 cut(s)	998, 1128
PpuMI	RGGWCCY	2 cut(s)	851, 955
Psp124BI	GAGCTC	1 cut(s)	277
Psp1406I	AACGTT	1 cut(s)	307
Psp5II	RGGWCCY	2 cut(s)	851, 955
Psp6I	CCWGG	1 cut(s)	1048
PspGI	CCWGG	1 cut(s)	1048
PspN4I	GGNNCC	3 cut(s)	610, 853, 912
PspPI	GGNCC	2 cut(s)	851, 955
PspPPI	RGGWCCY	2 cut(s)	851, 955
PstI	CTGCAG	1 cut(s)	963
RsaI	GTAC	3 cut(s)	516, 677, 868
RsaNI	GTAC	3 cut(s)	515, 676, 867
RseI	CAYNNNNRTG	1 cut(s)	757
SacI	GAGCTC	1 cut(s)	277
SaqAI	TTAA	5 cut(s)	113, 207, 399, 983, 1145
SatI	GCNGC	3 cut(s)	711, 1107, 1110
Sau3AI	GATC	2 cut(s)	146, 289
Sau96I	GGNCC	2 cut(s)	851, 955
ScaI	AGTACT	1 cut(s)	868
SchI	GAGTC	2 cut(s)	999, 1128
ScrFI	CCNGG	1 cut(s)	1050
SduI	GDGCHC	1 cut(s)	277
SfaNI	GCATC	1 cut(s)	714
SfcI	CTRYAG	1 cut(s)	959
SinI	GGWCC	2 cut(s)	851, 955
SmiMI	CAYNNNNRTG	1 cut(s)	757
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
SphI	GCATGC	1 cut(s)	642
Sse9I	AATT	6 cut(s)	345, 364, 466, 508, 573, 801
SsiI	CCGC	5 cut(s)	481, 518, 862, 1039, 1153
SspMI	CTAG	2 cut(s)	449, 626
SstI	GAGCTC	1 cut(s)	277
StyD4I	CCNGG	1 cut(s)	1048
TaaI	ACNGT	3 cut(s)	360, 1076, 1086
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	1 cut(s)	1059
TasI	AATT	6 cut(s)	345, 364, 466, 508, 573, 801
TatI	WGTACW	1 cut(s)	866
TfiI	GAWTC	3 cut(s)	445, 792, 943
Tru1I	TTAA	5 cut(s)	113, 207, 399, 983, 1145
Tru9I	TTAA	5 cut(s)	113, 207, 399, 983, 1145
TseFI	GTSAC	3 cut(s)	460, 692, 1076
TseI	GCWGC	3 cut(s)	710, 1106, 1109
Tsp45I	GTSAC	3 cut(s)	460, 692, 1076
TspDTI	ATGAA	8 cut(s)	87, 118, 213, 338, 745, 784, 911, 1079
Vha464I	CTTAAG	1 cut(s)	112
VpaK11BI	GGWCC	2 cut(s)	851, 955
XapI	RAATTY	1 cut(s)	345
XceI	RCATGY	2 cut(s)	184, 642
XcmI	CCANNNNNNNNNTGG	1 cut(s)	579
XmiI	GTMKAC	1 cut(s)	744
XspI	CTAG	2 cut(s)	449, 626
ZrmI	AGTACT	1 cut(s)	868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.