Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001650

Physical Location & Seq

Genomic Coordinates Forward (+)

11964978 .. 11966969

Gene Structure 1992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g15270.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGTTTACCATCCACAACGAGACGCTGAACGTTTGGACGCATTTGATCGGATTCTTCCTTTTTCTTTCCTTGACCATATACACTGCAATTAAGGTTCCCGAGGTCGTTGATCTTCATGCTCTGCAGCATTTACCTGATGTGCTGAAAAAGGCTGATCTGCACAAATTACATGAAGAATTCATGACCTGCCTCCCTTCCTTACCCAACATGCCAGATCTTAACAGACTTAGAGAAGAGTTAAAGACATCATTAACTTCAATCGATCTGCTACCGTCACTCTCTGGTTGGCATGTTATGGAACTTCTGAAAAACTGTTTGCCGCAACGATTCTCCCATGGCAACCAAACTGATGTCTGTATGCTGCGTAGCATGAAGGAGGATGTAGCAAACATAATAGCACCATTGATGATTAGACCAATCACGAGATGGCCATTTTTTGCTTTCTTGGGGGGAGCCATGTTTTGCTTGCTGACCAGCAGCGCATGCCATCTTCTCTCTTGCCACTCTGAGCGCATGTCGTATATAATGCTCAGGATGGACTATGCTGGAATTGCAGCCCTTATATCTACCTCATTCTACCCTCTCGTCTACTACACCTTCATGTGCAACCCTTTCTTCTGCGCCCTCTACATGGGATGCATAACCCTCTTGGGAATTGCCACAGTTTTGGTTTCTCTCATCCCAGTATTTCAAAATCCCGAATACCGAATAGTCCGTGTATCTCTTTTTCTTGGCATGGGCTTGTCCGGGATTCTACCCGTCATGCACAAGCTGATCTTGTTTTCAGATCAACCTGAGGCACTCCACACAACCGGGTATGAGATTCTGATGGGGCTTCTCTACGGGGTGGGAGCCCTGGTTTATGCCACAAGGATTCCAGAACGATGGATGCCTGGGAAGTTCGACATAGCAGGGCACAGCCACCAGCTGTTTCACGTATTGGTGGTGGCGGGGGCATACACCCATTACCGTGCAGGGCTCGTGTACCTCAAGTGGCGCGACTTAGCGGGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0010033 GO:0034285 GO:0042221 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

339

Amino Acids

38.31

Weight (kDa)

7.24

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37680 AT4G37680 AT4G37680 AT4G37680 AT4G37680 AT4G38320
fragaria_vesca	FvH4_1g17920 FvH4_1g17920 FvH4_1g17920 FvH4_5g20320 FvH4_5g20320 FvH4_5g20320
malus_domestica	MD02G1187800.v1.1 MD04G1053000.v1.1 MD06G1047400.v1.1 MD15G1298700.v1.1
prunus_persica	Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.6G219200_v2.0.a1 Prupe.6G219200_v2.0.a1
pyrus_communis	pycom02g15270 pycom04g04650 pycom06g04030 pycom15g26150
rosa_chinensis	RchiOBHm_Chr2g0108351 RchiOBHm_Chr7g0205491
rosa_laevigata	RLG00000003374 RLG00000017663
rosa_multiflora	Rmu_sc0002237.1_g000016 Rmu_sc0002372.1_g000016 Rmu_sc0041421.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135220 Rroxscaffold_3G00252180
rosa_rugosa	Rorug02G0152200 Rorug07G0091600 Rorug07G0091700
rosa_samantha	Rh2AG201200 Rh2BG214100 Rh2CG205500 Rh2DG208600 Rh7AG222300 Rh7BG217700 Rh7CG234700 Rh7DG228700
rosa_wichuraiana	Rw2G016020 Rw2G016080 Rw7G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	194
AccI	GTMKAC	1 cut(s)	588
AccII	CGCG	1 cut(s)	999
AciI	CCGC	3 cut(s)	320, 950, 1007
AclI	AACGTT	1 cut(s)	30
AcoI	YGGCCR	1 cut(s)	428
AcsI	RAATTY	1 cut(s)	176
AfaI	GTAC	1 cut(s)	986
AfiI	CCNNNNNNNGG	1 cut(s)	631
AgsI	TTSAA	2 cut(s)	258, 692
AjnI	CCWGG	2 cut(s)	855, 892
AluBI	AGCT	2 cut(s)	772, 928
AluI	AGCT	2 cut(s)	772, 928
Alw26I	GTCTC	1 cut(s)	14
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	1 cut(s)	428
ApeKI	GCWGC	4 cut(s)	124, 361, 477, 554
ApoI	RAATTY	1 cut(s)	176
AspLEI	GCGC	4 cut(s)	482, 513, 623, 999
AsuC2I	CCSGG	2 cut(s)	748, 814
AvaI	CYCGRG	1 cut(s)	98
AxyI	CCTNAGG	1 cut(s)	795
BaeGI	GKGCMC	1 cut(s)	918
BalI	TGGCCA	1 cut(s)	430
BanII	GRGCYC	2 cut(s)	856, 981
BauI	CACGAG	2 cut(s)	421, 980
BbvI	GCAGC	4 cut(s)	136, 348, 489, 566
BccI	CCATC	6 cut(s)	17, 420, 495, 529, 823, 879
BciT130I	CCWGG	2 cut(s)	857, 894
BcnI	CCSGG	2 cut(s)	748, 814
BcoDI	GTCTC	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	122
BfuAI	ACCTGC	1 cut(s)	194
BglII	AGATCT	1 cut(s)	214
BisI	GCNGC	5 cut(s)	125, 320, 362, 478, 555
BlsI	GCNGC	5 cut(s)	126, 321, 363, 479, 556
Bme1390I	CCNGG	4 cut(s)	748, 814, 857, 894
BmeT110I	CYCGRG	1 cut(s)	98
BmiI	GGNNCC	3 cut(s)	96, 454, 853
BmrFI	CCNGG	4 cut(s)	748, 814, 857, 894
BmrI	ACTGGG	1 cut(s)	677
BmsI	GCATC	2 cut(s)	626, 879
BmuI	ACTGGG	1 cut(s)	677
Bpu10I	CCTNAGC	1 cut(s)	530
BpuEI	CTTGAG	1 cut(s)	974
BpuMI	CCSGG	2 cut(s)	748, 814
Bsa29I	ATCGAT	1 cut(s)	261
BsaAI	YACGTR	1 cut(s)	937
BsaJI	CCNNGG	4 cut(s)	99, 334, 855, 893
BsaXI	ACNNNNNCTCC	2 cut(s)	843, 873
Bsc4I	CCNNNNNNNGG	1 cut(s)	631
Bse1I	ACTGG	1 cut(s)	683
Bse21I	CCTNAGG	1 cut(s)	795
BseBI	CCWGG	2 cut(s)	857, 894
BseCI	ATCGAT	1 cut(s)	261
BseDI	CCNNGG	4 cut(s)	99, 334, 855, 893
BseGI	GGATG	6 cut(s)	9, 385, 540, 641, 678, 894
BseLI	CCNNNNNNNGG	1 cut(s)	631
BseMII	CTCAG	3 cut(s)	498, 544, 786
BseNI	ACTGG	1 cut(s)	683
BseSI	GKGCMC	1 cut(s)	918
BseXI	GCAGC	4 cut(s)	136, 348, 489, 566
BsgI	GTGCAG	2 cut(s)	143, 993
Bsh1236I	CGCG	1 cut(s)	999
BshFI	GGCC	1 cut(s)	430
BshVI	ATCGAT	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	2 cut(s)	747, 813
BslI	CCNNNNNNNGG	1 cut(s)	631
BsmAI	GTCTC	1 cut(s)	14
BsmBI	CGTCTC	1 cut(s)	14
BsnI	GGCC	1 cut(s)	430
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	3 cut(s)	856, 918, 981
Bsp143I	GATC	7 cut(s)	45, 109, 154, 214, 262, 774, 787
Bsp19I	CCATGG	1 cut(s)	334
BspACI	CCGC	3 cut(s)	320, 950, 1007
BspANI	GGCC	1 cut(s)	430
BspCNI	CTCAG	3 cut(s)	499, 543, 787
BspDI	ATCGAT	1 cut(s)	261
BspFNI	CGCG	1 cut(s)	999
BspHI	TCATGA	1 cut(s)	180
BspLI	GGNNCC	3 cut(s)	96, 454, 853
BspMAI	CTGCAG	1 cut(s)	126
BspMI	ACCTGC	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	683
BssECI	CCNNGG	4 cut(s)	99, 334, 855, 893
BssMI	GATC	7 cut(s)	45, 109, 154, 214, 262, 774, 787
BssSI	CACGAG	2 cut(s)	421, 980
BssT1I	CCWWGG	1 cut(s)	334
Bst2BI	CACGAG	2 cut(s)	421, 980
Bst2UI	CCWGG	2 cut(s)	857, 894
Bst4CI	ACNGT	4 cut(s)	273, 314, 664, 971
Bst6I	CTCTTC	1 cut(s)	228
BstAPI	GCANNNNNTGC	1 cut(s)	483
BstBAI	YACGTR	1 cut(s)	937
BstC8I	GCNNGC	2 cut(s)	467, 484
BstDEI	CTNAG	5 cut(s)	227, 507, 530, 795, 1003
BstDSI	CCRYGG	1 cut(s)	334
BstF5I	GGATG	6 cut(s)	9, 385, 540, 641, 678, 894
BstFNI	CGCG	1 cut(s)	999
BstHHI	GCGC	4 cut(s)	482, 513, 623, 999
BstKTI	GATC	7 cut(s)	48, 112, 157, 217, 265, 777, 790
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	7 cut(s)	45, 109, 154, 214, 262, 774, 787
BstMWI	GCNNNNNNNGC	2 cut(s)	483, 551
BstNI	CCWGG	2 cut(s)	857, 894
BstNSI	RCATGY	4 cut(s)	211, 293, 486, 517
BstSCI	CCNGG	4 cut(s)	746, 812, 855, 892
BstSFI	CTRYAG	1 cut(s)	122
BstSLI	GKGCMC	1 cut(s)	918
BstUI	CGCG	1 cut(s)	999
BstV1I	GCAGC	4 cut(s)	136, 348, 489, 566
BstX2I	RGATCY	1 cut(s)	214
BstXI	CCANNNNNNTGG	2 cut(s)	667, 885
BstYI	RGATCY	1 cut(s)	214
Bsu15I	ATCGAT	1 cut(s)	261
Bsu36I	CCTNAGG	1 cut(s)	795
BsuRI	GGCC	1 cut(s)	430
BsuTUI	ATCGAT	1 cut(s)	261
BtgI	CCRYGG	1 cut(s)	334
BtsCI	GGATG	6 cut(s)	9, 385, 540, 641, 678, 894
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	81
BveI	ACCTGC	1 cut(s)	194
Cac8I	GCNNGC	2 cut(s)	467, 484
CciI	TCATGA	1 cut(s)	180
CfoI	GCGC	4 cut(s)	482, 513, 623, 999
ClaI	ATCGAT	1 cut(s)	261
CseI	GACGC	2 cut(s)	31, 46
Csp6I	GTAC	1 cut(s)	985
CviQI	GTAC	1 cut(s)	985
DdeI	CTNAG	5 cut(s)	227, 507, 530, 795, 1003
DpnI	GATC	7 cut(s)	47, 111, 156, 216, 264, 776, 789
DpnII	GATC	7 cut(s)	45, 109, 154, 214, 262, 774, 787
EaeI	YGGCCR	1 cut(s)	428
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	334
Eco24I	GRGCYC	2 cut(s)	856, 981
Eco81I	CCTNAGG	1 cut(s)	795
Eco88I	CYCGRG	1 cut(s)	98
EcoRI	GAATTC	1 cut(s)	176
EcoRII	CCWGG	2 cut(s)	855, 892
EcoT14I	CCWWGG	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	641
EcoT38I	GRGCYC	2 cut(s)	856, 981
ErhI	CCWWGG	1 cut(s)	334
Esp3I	CGTCTC	1 cut(s)	14
FalI	AAGNNNNNCTT	2 cut(s)	761, 793
FauI	CCCGC	2 cut(s)	943, 1000
FblI	GTMKAC	1 cut(s)	588
Fnu4HI	GCNGC	5 cut(s)	125, 320, 362, 478, 555
FokI	GGATG	5 cut(s)	392, 547, 648, 665, 901
FriOI	GRGCYC	2 cut(s)	856, 981
Fsp4HI	GCNGC	5 cut(s)	125, 320, 362, 478, 555
GlaI	GCGC	4 cut(s)	481, 512, 622, 998
GluI	GCNGC	5 cut(s)	125, 320, 362, 478, 555
HaeIII	GGCC	1 cut(s)	430
HapII	CCGG	2 cut(s)	747, 813
HgaI	GACGC	2 cut(s)	31, 46
HhaI	GCGC	4 cut(s)	482, 513, 623, 999
Hin6I	GCGC	4 cut(s)	480, 511, 621, 997
HinP1I	GCGC	4 cut(s)	480, 511, 621, 997
HinfI	GANTC	5 cut(s)	51, 327, 751, 823, 874
HpaII	CCGG	2 cut(s)	747, 813
Hpy166II	GTNNAC	3 cut(s)	6, 589, 985
Hpy188I	TCNGA	5 cut(s)	50, 306, 508, 787, 828
Hpy188III	TCNNGA	6 cut(s)	98, 181, 421, 532, 698, 878
Hpy8I	GTNNAC	3 cut(s)	6, 589, 985
HpyAV	CCTTC	3 cut(s)	204, 367, 607
HpyCH4III	ACNGT	4 cut(s)	273, 314, 664, 971
HpyCH4IV	ACGT	2 cut(s)	30, 936
HpyCH4V	TGCA	8 cut(s)	86, 124, 160, 554, 606, 639, 766, 974
HpyF10VI	GCNNNNNNNGC	2 cut(s)	483, 551
HpyF3I	CTNAG	5 cut(s)	227, 507, 530, 795, 1003
HpySE526I	ACGT	2 cut(s)	30, 936
HspAI	GCGC	4 cut(s)	480, 511, 621, 997
Kzo9I	GATC	7 cut(s)	45, 109, 154, 214, 262, 774, 787
LmnI	GCTCC	2 cut(s)	452, 851
Lsp1109I	GCAGC	4 cut(s)	136, 348, 489, 566
LweI	GCATC	2 cut(s)	626, 879
MaeII	ACGT	2 cut(s)	30, 936
MaeIII	GTNAC	1 cut(s)	273
MalI	GATC	7 cut(s)	47, 111, 156, 216, 264, 776, 789
MboI	GATC	7 cut(s)	45, 109, 154, 214, 262, 774, 787
MboII	GAAGA	6 cut(s)	46, 104, 185, 245, 482, 607
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	3 cut(s)	856, 918, 981
MlsI	TGGCCA	1 cut(s)	430
MluCI	AATT	5 cut(s)	87, 164, 176, 549, 654
MluNI	TGGCCA	1 cut(s)	430
MnlI	CCTC	9 cut(s)	94, 200, 370, 580, 591, 635, 656, 790, 998
Mox20I	TGGCCA	1 cut(s)	430
Mph1103I	ATGCAT	1 cut(s)	641
MscI	TGGCCA	1 cut(s)	430
MseI	TTAA	4 cut(s)	90, 219, 239, 251
MslI	CAYNNNNRTG	2 cut(s)	599, 969
Msp20I	TGGCCA	1 cut(s)	430
MspA1I	CMGCKG	1 cut(s)	928
MspI	CCGG	2 cut(s)	747, 813
MspR9I	CCNGG	4 cut(s)	748, 814, 857, 894
MvaI	CCWGG	2 cut(s)	857, 894
MvnI	CGCG	1 cut(s)	999
MwoI	GCNNNNNNNGC	2 cut(s)	483, 551
NciI	CCSGG	2 cut(s)	748, 814
NcoI	CCATGG	1 cut(s)	334
NdeII	GATC	7 cut(s)	45, 109, 154, 214, 262, 774, 787
NlaIV	GGNNCC	3 cut(s)	96, 454, 853
NmuCI	GTSAC	1 cut(s)	273
NsiI	ATGCAT	1 cut(s)	641
NspI	RCATGY	4 cut(s)	211, 293, 486, 517
PaeI	GCATGC	1 cut(s)	486
PagI	TCATGA	1 cut(s)	180
PfeI	GAWTC	5 cut(s)	51, 327, 751, 823, 874
PfoI	TCCNGGA	1 cut(s)	746
PkrI	GCNGC	5 cut(s)	126, 321, 363, 479, 556
Ppu21I	YACGTR	1 cut(s)	937
Psp1406I	AACGTT	1 cut(s)	30
Psp6I	CCWGG	2 cut(s)	855, 892
PspGI	CCWGG	2 cut(s)	855, 892
PspN4I	GGNNCC	3 cut(s)	96, 454, 853
PstI	CTGCAG	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	214
PvuII	CAGCTG	1 cut(s)	928
RsaI	GTAC	1 cut(s)	986
RsaNI	GTAC	1 cut(s)	985
RseI	CAYNNNNRTG	2 cut(s)	599, 969
SaqAI	TTAA	4 cut(s)	90, 219, 239, 251
SatI	GCNGC	5 cut(s)	125, 320, 362, 478, 555
Sau3AI	GATC	7 cut(s)	45, 109, 154, 214, 262, 774, 787
ScrFI	CCNGG	4 cut(s)	748, 814, 857, 894
SduI	GDGCHC	3 cut(s)	856, 918, 981
SfaNI	GCATC	2 cut(s)	626, 879
SfcI	CTRYAG	1 cut(s)	122
SmiMI	CAYNNNNRTG	2 cut(s)	599, 969
SmlI	CTYRAG	1 cut(s)	989
SmoI	CTYRAG	1 cut(s)	989
SphI	GCATGC	1 cut(s)	486
Sse9I	AATT	5 cut(s)	87, 164, 176, 549, 654
SsiI	CCGC	3 cut(s)	320, 950, 1007
StyD4I	CCNGG	4 cut(s)	746, 812, 855, 892
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	4 cut(s)	273, 314, 664, 971
TaiI	ACGT	2 cut(s)	33, 939
TaqI	TCGA	2 cut(s)	261, 903
TasI	AATT	5 cut(s)	87, 164, 176, 549, 654
TauI	GCSGC	1 cut(s)	322
TfiI	GAWTC	5 cut(s)	51, 327, 751, 823, 874
Tru1I	TTAA	4 cut(s)	90, 219, 239, 251
Tru9I	TTAA	4 cut(s)	90, 219, 239, 251
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	273
TseI	GCWGC	4 cut(s)	124, 361, 477, 554
Tsp45I	GTSAC	1 cut(s)	273
TspDTI	ATGAA	5 cut(s)	104, 169, 186, 386, 589
TspGWI	ACGGA	1 cut(s)	704
TspRI	CASTG	1 cut(s)	88
XapI	RAATTY	1 cut(s)	176
XceI	RCATGY	4 cut(s)	211, 293, 486, 517
XcmI	CCANNNNNNNNNTGG	1 cut(s)	423
XmiI	GTMKAC	1 cut(s)	588
Zsp2I	ATGCAT	1 cut(s)	641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.