Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041421.1

Orthogroup ID

OG0001650

Physical Location & Seq

Genomic Coordinates Forward (+)

10 .. 1544

Gene Structure 1535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041421.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atgcctggtctgaacaaactcagggaggagttaaaaacttcattgccttcaatggatctgcttccctcactctctggttggcatgttatggaacttctgaataattgtttgcctcagaggttctcccatggcaaccacactgatgtttgtgttctgcatagcatgaaggaagatttagcaaacataatagcaccattggtgttgagacctatcacacggtggccattttttgctttcttgggaggagcaatgttttgcttgctggccagtagcgcttgccatcttctctcttgtcactctgagcgaatgtcatatatcatgctcaggctggactatgctggaattgcagccctcatatccacctcattttaccctcttgtctactactccttcatgtgcaaccctttcttctgcaccctttacatggggttcattaccatcttgggaattgccacagtcttggtttccctcttgcctgtctttcaaactcctcagtaccgaagcgtccgtgcatctcttttcttcggcatgggcttgtcgggcattctacctatcctccacaaggttatcttgttttcagaccaacccgaggcactccacacaactgggtatgagattctcatggggcttttctatgggattggggcactggtttatgcaacaaggattccagaacgatggatgcctgggaaattcgacattgcagggcacagccaccaactgtttcacgtactggtagtcgcaggcgcatacactcattaccgtgcagggcttgtttacttgaagtggcgcgatttagaaggttgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0010033 GO:0034285 GO:0042221 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

269

Amino Acids

30.25

Weight (kDa)

8.11

Isoelectric Point (pI)

55.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37680 AT4G37680 AT4G37680 AT4G37680 AT4G37680 AT4G38320
fragaria_vesca	FvH4_1g17920 FvH4_1g17920 FvH4_1g17920 FvH4_5g20320 FvH4_5g20320 FvH4_5g20320
malus_domestica	MD02G1187800.v1.1 MD04G1053000.v1.1 MD06G1047400.v1.1 MD15G1298700.v1.1
prunus_persica	Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.6G219200_v2.0.a1 Prupe.6G219200_v2.0.a1
pyrus_communis	pycom02g15270 pycom04g04650 pycom06g04030 pycom15g26150
rosa_chinensis	RchiOBHm_Chr2g0108351 RchiOBHm_Chr7g0205491
rosa_laevigata	RLG00000003374 RLG00000017663
rosa_multiflora	Rmu_sc0002237.1_g000016 Rmu_sc0002372.1_g000016 Rmu_sc0041421.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135220 Rroxscaffold_3G00252180
rosa_rugosa	Rorug02G0152200 Rorug07G0091600 Rorug07G0091700
rosa_samantha	Rh2AG201200 Rh2BG214100 Rh2CG205500 Rh2DG208600 Rh7AG222300 Rh7BG217700 Rh7CG234700 Rh7DG228700
rosa_wichuraiana	Rw2G016020 Rw2G016080 Rw7G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	381
AccII	CGCG	1 cut(s)	792
AclWI	GGATC	1 cut(s)	63
AcoI	YGGCCR	2 cut(s)	221, 264
AcsI	RAATTY	1 cut(s)	692
AdeI	CACNNNGTG	1 cut(s)	219
AfaI	GTAC	2 cut(s)	497, 732
AfeI	AGCGCT	1 cut(s)	274
AfiI	CCNNNNNNNGG	3 cut(s)	424, 562, 589
AgsI	TTSAA	3 cut(s)	51, 485, 784
AjnI	CCWGG	2 cut(s)	4, 685
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	63
Ama87I	CYCGRG	1 cut(s)	587
Aor51HI	AGCGCT	1 cut(s)	274
AoxI	GGCC	2 cut(s)	221, 264
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	1 cut(s)	692
AspLEI	GCGC	3 cut(s)	275, 749, 792
AvaI	CYCGRG	1 cut(s)	587
BaeGI	GKGCMC	2 cut(s)	649, 711
BalI	TGGCCA	2 cut(s)	223, 266
BbvI	GCAGC	1 cut(s)	359
BccI	CCATC	3 cut(s)	288, 446, 672
BciT130I	CCWGG	2 cut(s)	6, 687
BcoDI	GTCTC	1 cut(s)	199
BfoI	RGCGCY	1 cut(s)	276
BisI	GCNGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	349
Bme1390I	CCNGG	2 cut(s)	6, 687
BmeT110I	CYCGRG	1 cut(s)	587
BmrFI	CCNGG	2 cut(s)	6, 687
BmrI	ACTGGG	1 cut(s)	615
BmsI	GCATC	2 cut(s)	521, 672
BmuI	ACTGGG	1 cut(s)	615
Bpu10I	CCTNAGC	1 cut(s)	323
BsaAI	YACGTR	1 cut(s)	730
BsaI	GGTCTC	1 cut(s)	199
BsaJI	CCNNGG	3 cut(s)	127, 588, 686
BsaXI	ACNNNNNCTCC	2 cut(s)	540, 570
Bsc4I	CCNNNNNNNGG	3 cut(s)	424, 562, 589
Bse1I	ACTGG	4 cut(s)	267, 610, 654, 738
Bse3DI	GCAATG	3 cut(s)	41, 255, 699
BseBI	CCWGG	2 cut(s)	6, 687
BseDI	CCNNGG	3 cut(s)	127, 588, 686
BseGI	GGATG	1 cut(s)	687
BseLI	CCNNNNNNNGG	3 cut(s)	424, 562, 589
BseMI	GCAATG	3 cut(s)	41, 255, 699
BseMII	CTCAG	5 cut(s)	34, 128, 291, 337, 506
BseNI	ACTGG	4 cut(s)	267, 610, 654, 738
BseRI	GAGGAG	3 cut(s)	41, 258, 480
BseSI	GKGCMC	2 cut(s)	649, 711
BseXI	GCAGC	1 cut(s)	359
BsgI	GTGCAG	2 cut(s)	397, 786
Bsh1236I	CGCG	1 cut(s)	792
BshFI	GGCC	2 cut(s)	223, 266
BsiHKCI	CYCGRG	1 cut(s)	587
BslI	CCNNNNNNNGG	3 cut(s)	424, 562, 589
BsmAI	GTCTC	1 cut(s)	199
BsmI	GAATGC	1 cut(s)	543
BsnI	GGCC	2 cut(s)	223, 266
Bso31I	GGTCTC	1 cut(s)	199
BsoBI	CYCGRG	1 cut(s)	587
Bsp1286I	GDGCHC	2 cut(s)	649, 711
Bsp143I	GATC	1 cut(s)	55
Bsp19I	CCATGG	1 cut(s)	127
BspANI	GGCC	2 cut(s)	223, 266
BspCNI	CTCAG	5 cut(s)	33, 127, 292, 336, 505
BspFNI	CGCG	1 cut(s)	792
BspPI	GGATC	1 cut(s)	63
BspTNI	GGTCTC	1 cut(s)	199
BsrDI	GCAATG	3 cut(s)	41, 255, 699
BsrI	ACTGG	4 cut(s)	267, 610, 654, 738
BssECI	CCNNGG	3 cut(s)	127, 588, 686
BssMI	GATC	1 cut(s)	55
BssT1I	CCWWGG	1 cut(s)	127
Bst2UI	CCWGG	2 cut(s)	6, 687
Bst4CI	ACNGT	4 cut(s)	219, 457, 723, 764
BstBAI	YACGTR	1 cut(s)	730
BstC8I	GCNNGC	4 cut(s)	260, 264, 277, 745
BstDEI	CTNAG	5 cut(s)	20, 114, 300, 323, 492
BstDSI	CCRYGG	1 cut(s)	127
BstENI	CCTNNNNNAGG	1 cut(s)	560
BstF5I	GGATG	1 cut(s)	687
BstFNI	CGCG	1 cut(s)	792
BstH2I	RGCGCY	1 cut(s)	276
BstHHI	GCGC	3 cut(s)	275, 749, 792
BstKTI	GATC	1 cut(s)	58
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 344, 540
BstNI	CCWGG	2 cut(s)	6, 687
BstNSI	RCATGY	1 cut(s)	86
BstSCI	CCNGG	2 cut(s)	4, 685
BstSLI	GKGCMC	2 cut(s)	649, 711
BstUI	CGCG	1 cut(s)	792
BstV1I	GCAGC	1 cut(s)	359
BstX2I	RGATCY	1 cut(s)	55
BstXI	CCANNNNNNTGG	3 cut(s)	460, 605, 678
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	223, 266
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	687
BtsIMutI	CAGTG	2 cut(s)	138, 647
Cac8I	GCNNGC	4 cut(s)	260, 264, 277, 745
CfoI	GCGC	3 cut(s)	275, 749, 792
CseI	GACGC	1 cut(s)	493
Csp6I	GTAC	2 cut(s)	496, 731
CviAII	CATG	8 cut(s)	83, 128, 163, 319, 394, 424, 529, 622
CviJI	RGCY	8 cut(s)	223, 266, 328, 350, 534, 628, 714, 772
CviKI_1	RGCY	8 cut(s)	223, 266, 328, 350, 534, 628, 714, 772
CviQI	GTAC	2 cut(s)	496, 731
DdeI	CTNAG	5 cut(s)	20, 114, 300, 323, 492
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
DraIII	CACNNNGTG	1 cut(s)	219
EaeI	YGGCCR	2 cut(s)	221, 264
Eco130I	CCWWGG	1 cut(s)	127
Eco31I	GGTCTC	1 cut(s)	199
Eco47III	AGCGCT	1 cut(s)	274
Eco88I	CYCGRG	1 cut(s)	587
EcoNI	CCTNNNNNAGG	1 cut(s)	560
EcoRII	CCWGG	2 cut(s)	4, 685
EcoT14I	CCWWGG	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	8 cut(s)	86, 131, 166, 322, 397, 427, 532, 625
FalI	AAGNNNNNCTT	2 cut(s)	554, 586
FatI	CATG	8 cut(s)	82, 127, 162, 318, 393, 423, 528, 621
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	1 cut(s)	348
FokI	GGATG	1 cut(s)	694
Fsp4HI	GCNGC	1 cut(s)	348
GlaI	GCGC	3 cut(s)	274, 748, 791
GluI	GCNGC	1 cut(s)	348
HaeII	RGCGCY	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	223, 266
HgaI	GACGC	1 cut(s)	493
HhaI	GCGC	3 cut(s)	275, 749, 792
Hin1II	CATG	8 cut(s)	86, 131, 166, 322, 397, 427, 532, 625
Hin6I	GCGC	3 cut(s)	273, 747, 790
HinP1I	GCGC	3 cut(s)	273, 747, 790
HinfI	GANTC	2 cut(s)	616, 667
Hpy166II	GTNNAC	2 cut(s)	382, 778
Hpy188I	TCNGA	5 cut(s)	12, 99, 117, 301, 580
Hpy188III	TCNNGA	1 cut(s)	671
Hpy8I	GTNNAC	2 cut(s)	382, 778
HpyAV	CCTTC	4 cut(s)	57, 160, 400, 794
HpyCH4III	ACNGT	4 cut(s)	219, 457, 723, 764
HpyCH4IV	ACGT	1 cut(s)	729
HpyCH4V	TGCA	8 cut(s)	157, 347, 399, 414, 512, 659, 704, 767
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 344, 540
HpyF3I	CTNAG	5 cut(s)	20, 114, 300, 323, 492
HpySE526I	ACGT	1 cut(s)	729
Hsp92II	CATG	8 cut(s)	86, 131, 166, 322, 397, 427, 532, 625
HspAI	GCGC	3 cut(s)	273, 747, 790
Kzo9I	GATC	1 cut(s)	55
LmnI	GCTCC	1 cut(s)	245
Lsp1109I	GCAGC	1 cut(s)	359
LweI	GCATC	2 cut(s)	521, 672
MaeII	ACGT	1 cut(s)	729
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	4 cut(s)	182, 275, 400, 514
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	2 cut(s)	649, 711
MlsI	TGGCCA	2 cut(s)	223, 266
MluCI	AATT	4 cut(s)	103, 342, 447, 692
MluNI	TGGCCA	2 cut(s)	223, 266
Mox20I	TGGCCA	2 cut(s)	223, 266
MscI	TGGCCA	2 cut(s)	223, 266
MseI	TTAA	1 cut(s)	32
MslI	CAYNNNNRTG	2 cut(s)	141, 762
Msp20I	TGGCCA	2 cut(s)	223, 266
MspR9I	CCNGG	2 cut(s)	6, 687
Mva1269I	GAATGC	1 cut(s)	543
MvaI	CCWGG	2 cut(s)	6, 687
MvnI	CGCG	1 cut(s)	792
MwoI	GCNNNNNNNGC	3 cut(s)	272, 344, 540
NcoI	CCATGG	1 cut(s)	127
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	8 cut(s)	86, 131, 166, 322, 397, 427, 532, 625
NmuCI	GTSAC	1 cut(s)	293
NspI	RCATGY	1 cut(s)	86
PctI	GAATGC	1 cut(s)	543
PfeI	GAWTC	2 cut(s)	616, 667
PkrI	GCNGC	1 cut(s)	349
Ppu21I	YACGTR	1 cut(s)	730
Psp6I	CCWGG	2 cut(s)	4, 685
PspGI	CCWGG	2 cut(s)	4, 685
PsuI	RGATCY	1 cut(s)	55
RsaI	GTAC	2 cut(s)	497, 732
RsaNI	GTAC	2 cut(s)	496, 731
RseI	CAYNNNNRTG	2 cut(s)	141, 762
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	1 cut(s)	55
ScrFI	CCNGG	2 cut(s)	6, 687
SduI	GDGCHC	2 cut(s)	649, 711
SetI	ASST	7 cut(s)	122, 211, 365, 553, 567, 732, 805
SfaNI	GCATC	2 cut(s)	521, 672
SmiMI	CAYNNNNRTG	2 cut(s)	141, 762
Sse9I	AATT	4 cut(s)	103, 342, 447, 692
StyD4I	CCNGG	2 cut(s)	4, 685
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	4 cut(s)	219, 457, 723, 764
TaiI	ACGT	1 cut(s)	732
TaqI	TCGA	1 cut(s)	696
TasI	AATT	4 cut(s)	103, 342, 447, 692
TfiI	GAWTC	2 cut(s)	616, 667
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	2 cut(s)	145, 654
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	1 cut(s)	347
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	4 cut(s)	30, 179, 382, 421
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	2 cut(s)	145, 654
XagI	CCTNNNNNAGG	1 cut(s)	560
XapI	RAATTY	1 cut(s)	692
XceI	RCATGY	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.