Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001650

Physical Location & Seq

Genomic Coordinates Reverse (-)

72816531 .. 72820083

Gene Structure 3553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00135220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGGCAGTGAAGAACAAAGCTTTGAGGATGCGAAACTGGTTGCTGATGCAATGGATAATACTCAGGCATGTGCATCAAAGGAAGGTAAAGGAAAGCGTCTGTGGAAGAAGGTGAAGTATCAGCTGGTTGAGTACCACTGTTTGCCCCACTATTTAAGGGACAACGAGTATATCGTGGGTCATTACCGCTCTGAGTGGCCATTGAAGCAGGTCTTGCTCAGTATGTTCACCATCCACAATGAGACGCTGAACGTTTGGACGCATTTGATCGGGTTCTTCCTTTTTCTTGCCCTGACCATATACACTGCAATGAAGGTTCCAGAGGTCGTTGATCTTCATGTCCTACCAGATGTGCTGAAAAATGCTGATCTTCACAAGTTGCATGAAGAACTCATGACATGCCTGCCGTCATTACCCAACATGCCTAATCTGAACAAACTCAGGGAGGAGTTAAAGACTTCATTGCCTTCAATGGATCTGCTTCCCTCACTCTCTGGTTGGCATGTTATGGAACTTCTGAATAATTGTTTGCCTCAGAGGTTCTCCCATGGCAACCACACTGATGTTTGTGTTCTGCATAGCATGAAGGAAGATTTAGCAAACATAATAGCACCATTGGTGTTGAGACCTATCACACGGTGGCCATTTTTTGCTTTCTTGGGAGGAGCAATGTTTTGCTTGCTGGCCAGTAGTGCTTGCCATCTTCTCTCTTGTCACTCTGAGCGAATGTCATATATCATGCTCAGGATGGACTATGCTGGAATTGCAGCCCTCATATCCACCTCATTTTACCCTCTTGTCTACTACTCCTTCATGTGCAACCCTTTCTTCTGCACCCTTTACATGGGGTTCATAACCATCTTGGGAATTGCCACAGTCTTGGTTTCCCTCTTGCCTGTCTTTCAAACTCCTCAGTACCGTAGTGTCCGTGCATCTCTTTTCTTCGGCATGGGCTTGTCGGGCATTCTACCTATCCTCCACAAGGTTATCTTGTTTTCAGACCAACCCGAGGCACTCCACACAACTGGGTATGAGATTCTCATGGGGCTTTTCTATGGGGTTGGGGCACTGGTTTATGCAACAAGGATTCCAGAACGATGGATGCCTGGGAAATTCGACATTGCAGGGCATAGCCACCAACTGTTTCACGTACTGGTAGTCGCAGGCGCATACACTCATTACCGTGCAGGGCTTGTTTACTTGAAGTGGCGCGATTTAGAAGGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0010033 GO:0034285 GO:0042221 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

409

Amino Acids

46.53

Weight (kDa)

6.84

Isoelectric Point (pI)

52.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HlyIII	PF03006	76 - 105	2.3e-06	Haemolysin-III related
HlyIII	PF03006	209 - 394	6.3e-56	Haemolysin-III related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37680 AT4G37680 AT4G37680 AT4G37680 AT4G37680 AT4G38320
fragaria_vesca	FvH4_1g17920 FvH4_1g17920 FvH4_1g17920 FvH4_5g20320 FvH4_5g20320 FvH4_5g20320
malus_domestica	MD02G1187800.v1.1 MD04G1053000.v1.1 MD06G1047400.v1.1 MD15G1298700.v1.1
prunus_persica	Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.5G057500_v2.0.a1 Prupe.6G219200_v2.0.a1 Prupe.6G219200_v2.0.a1
pyrus_communis	pycom02g15270 pycom04g04650 pycom06g04030 pycom15g26150
rosa_chinensis	RchiOBHm_Chr2g0108351 RchiOBHm_Chr7g0205491
rosa_laevigata	RLG00000003374 RLG00000017663
rosa_multiflora	Rmu_sc0002237.1_g000016 Rmu_sc0002372.1_g000016 Rmu_sc0041421.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135220 Rroxscaffold_3G00252180
rosa_rugosa	Rorug02G0152200 Rorug07G0091600 Rorug07G0091700
rosa_samantha	Rh2AG201200 Rh2BG214100 Rh2CG205500 Rh2DG208600 Rh7AG222300 Rh7BG217700 Rh7CG234700 Rh7DG228700
rosa_wichuraiana	Rw2G016020 Rw2G016080 Rw7G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	199
AccBSI	CCGCTC	1 cut(s)	189
AccI	GTMKAC	1 cut(s)	801
AccII	CGCG	1 cut(s)	1212
AciI	CCGC	1 cut(s)	187
AclI	AACGTT	1 cut(s)	252
AclWI	GGATC	1 cut(s)	483
AcoI	YGGCCR	3 cut(s)	197, 641, 684
AcsI	RAATTY	1 cut(s)	1112
AdeI	CACNNNGTG	1 cut(s)	639
AfaI	GTAC	3 cut(s)	134, 917, 1152
AfiI	CCNNNNNNNGG	3 cut(s)	844, 982, 1009
AgsI	TTSAA	4 cut(s)	205, 471, 905, 1204
AjnI	CCWGG	1 cut(s)	1105
AluBI	AGCT	2 cut(s)	21, 124
AluI	AGCT	2 cut(s)	21, 124
Alw26I	GTCTC	2 cut(s)	236, 619
AlwI	GGATC	1 cut(s)	483
Ama87I	CYCGRG	1 cut(s)	1007
AoxI	GGCC	3 cut(s)	197, 641, 684
ApeKI	GCWGC	1 cut(s)	767
ApoI	RAATTY	1 cut(s)	1112
AspLEI	GCGC	2 cut(s)	1169, 1212
AsuHPI	GGTGA	2 cut(s)	124, 220
AvaI	CYCGRG	1 cut(s)	1007
BaeGI	GKGCMC	1 cut(s)	1069
BalI	TGGCCA	3 cut(s)	199, 643, 686
BbvI	GCAGC	1 cut(s)	779
BccI	CCATC	5 cut(s)	239, 708, 742, 866, 1092
BceAI	ACGGC	1 cut(s)	391
BciT130I	CCWGG	1 cut(s)	1107
BcoDI	GTCTC	2 cut(s)	236, 619
BfuAI	ACCTGC	1 cut(s)	199
BisI	GCNGC	1 cut(s)	768
BlsI	GCNGC	1 cut(s)	769
Bme1390I	CCNGG	1 cut(s)	1107
BmeT110I	CYCGRG	1 cut(s)	1007
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	1 cut(s)	1107
BmrI	ACTGGG	1 cut(s)	1035
BmsI	GCATC	5 cut(s)	19, 37, 83, 941, 1092
BmuI	ACTGGG	1 cut(s)	1035
Bpu10I	CCTNAGC	1 cut(s)	743
BsaAI	YACGTR	1 cut(s)	1150
BsaI	GGTCTC	1 cut(s)	619
BsaJI	CCNNGG	3 cut(s)	547, 1008, 1106
BsaXI	ACNNNNNCTCC	2 cut(s)	960, 990
Bsc4I	CCNNNNNNNGG	3 cut(s)	844, 982, 1009
Bse1I	ACTGG	5 cut(s)	42, 687, 1030, 1074, 1158
Bse3DI	GCAATG	5 cut(s)	57, 315, 461, 675, 1119
BseBI	CCWGG	1 cut(s)	1107
BseDI	CCNNGG	3 cut(s)	547, 1008, 1106
BseGI	GGATG	4 cut(s)	34, 231, 753, 1107
BseLI	CCNNNNNNNGG	3 cut(s)	844, 982, 1009
BseMI	GCAATG	5 cut(s)	57, 315, 461, 675, 1119
BseMII	CTCAG	8 cut(s)	77, 183, 232, 454, 548, 711, 757, 926
BseNI	ACTGG	5 cut(s)	42, 687, 1030, 1074, 1158
BseRI	GAGGAG	3 cut(s)	461, 678, 900
BseSI	GKGCMC	1 cut(s)	1069
BseXI	GCAGC	1 cut(s)	779
BsgI	GTGCAG	2 cut(s)	817, 1206
Bsh1236I	CGCG	1 cut(s)	1212
BshFI	GGCC	3 cut(s)	199, 643, 686
BsiHKCI	CYCGRG	1 cut(s)	1007
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	3 cut(s)	844, 982, 1009
BsmAI	GTCTC	2 cut(s)	236, 619
BsmBI	CGTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	173
BsmI	GAATGC	1 cut(s)	963
BsnI	GGCC	3 cut(s)	199, 643, 686
Bso31I	GGTCTC	1 cut(s)	619
BsoBI	CYCGRG	1 cut(s)	1007
Bsp1286I	GDGCHC	1 cut(s)	1069
Bsp143I	GATC	4 cut(s)	267, 331, 367, 475
Bsp19I	CCATGG	1 cut(s)	547
BspACI	CCGC	1 cut(s)	187
BspANI	GGCC	3 cut(s)	199, 643, 686
BspCNI	CTCAG	8 cut(s)	76, 184, 231, 453, 547, 712, 756, 925
BspFNI	CGCG	1 cut(s)	1212
BspHI	TCATGA	1 cut(s)	393
BspLI	GGNNCC	1 cut(s)	318
BspMI	ACCTGC	1 cut(s)	199
BspPI	GGATC	1 cut(s)	483
BspTNI	GGTCTC	1 cut(s)	619
BsrBI	CCGCTC	1 cut(s)	189
BsrDI	GCAATG	5 cut(s)	57, 315, 461, 675, 1119
BsrI	ACTGG	5 cut(s)	42, 687, 1030, 1074, 1158
BssECI	CCNNGG	3 cut(s)	547, 1008, 1106
BssMI	GATC	4 cut(s)	267, 331, 367, 475
BssT1I	CCWWGG	1 cut(s)	547
Bst2UI	CCWGG	1 cut(s)	1107
Bst4CI	ACNGT	6 cut(s)	140, 639, 877, 920, 1143, 1184
BstAPI	GCANNNNNTGC	1 cut(s)	214
BstBAI	YACGTR	1 cut(s)	1150
BstC8I	GCNNGC	5 cut(s)	404, 680, 684, 697, 1165
BstDEI	CTNAG	8 cut(s)	63, 192, 218, 440, 534, 720, 743, 912
BstDSI	CCRYGG	1 cut(s)	547
BstENI	CCTNNNNNAGG	1 cut(s)	980
BstF5I	GGATG	4 cut(s)	34, 231, 753, 1107
BstFNI	CGCG	1 cut(s)	1212
BstHHI	GCGC	2 cut(s)	1169, 1212
BstKTI	GATC	4 cut(s)	270, 334, 370, 478
BstMAI	GTCTC	2 cut(s)	236, 619
BstMBI	GATC	4 cut(s)	267, 331, 367, 475
BstMWI	GCNNNNNNNGC	5 cut(s)	205, 214, 692, 764, 960
BstNI	CCWGG	1 cut(s)	1107
BstNSI	RCATGY	4 cut(s)	72, 402, 424, 506
BstSCI	CCNGG	1 cut(s)	1105
BstSLI	GKGCMC	1 cut(s)	1069
BstUI	CGCG	1 cut(s)	1212
BstV1I	GCAGC	1 cut(s)	779
BstX2I	RGATCY	1 cut(s)	475
BstXI	CCANNNNNNTGG	3 cut(s)	880, 1025, 1098
BstYI	RGATCY	1 cut(s)	475
BsuRI	GGCC	3 cut(s)	199, 643, 686
BtgI	CCRYGG	1 cut(s)	547
BtsCI	GGATG	4 cut(s)	34, 231, 753, 1107
BtsI	GCAGTG	2 cut(s)	13, 303
BtsIMutI	CAGTG	5 cut(s)	13, 136, 303, 558, 1067
BveI	ACCTGC	1 cut(s)	199
Cac8I	GCNNGC	5 cut(s)	404, 680, 684, 697, 1165
CciI	TCATGA	1 cut(s)	393
CfoI	GCGC	2 cut(s)	1169, 1212
CseI	GACGC	3 cut(s)	86, 253, 268
Csp6I	GTAC	3 cut(s)	133, 916, 1151
CviQI	GTAC	3 cut(s)	133, 916, 1151
DdeI	CTNAG	8 cut(s)	63, 192, 218, 440, 534, 720, 743, 912
DpnI	GATC	4 cut(s)	269, 333, 369, 477
DpnII	GATC	4 cut(s)	267, 331, 367, 475
DraIII	CACNNNGTG	1 cut(s)	639
EaeI	YGGCCR	3 cut(s)	197, 641, 684
Eco130I	CCWWGG	1 cut(s)	547
Eco31I	GGTCTC	1 cut(s)	619
Eco88I	CYCGRG	1 cut(s)	1007
EcoNI	CCTNNNNNAGG	1 cut(s)	980
EcoRII	CCWGG	1 cut(s)	1105
EcoT14I	CCWWGG	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	547
Esp3I	CGTCTC	1 cut(s)	236
FalI	AAGNNNNNCTT	4 cut(s)	197, 229, 974, 1006
FaqI	GGGAC	1 cut(s)	173
FblI	GTMKAC	1 cut(s)	801
Fnu4HI	GCNGC	1 cut(s)	768
FokI	GGATG	4 cut(s)	41, 218, 760, 1114
Fsp4HI	GCNGC	1 cut(s)	768
GlaI	GCGC	2 cut(s)	1168, 1211
GluI	GCNGC	1 cut(s)	768
HaeIII	GGCC	3 cut(s)	199, 643, 686
HgaI	GACGC	3 cut(s)	86, 253, 268
HhaI	GCGC	2 cut(s)	1169, 1212
Hin6I	GCGC	2 cut(s)	1167, 1210
HinP1I	GCGC	2 cut(s)	1167, 1210
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	2 cut(s)	1036, 1087
HphI	GGTGA	2 cut(s)	124, 220
Hpy166II	GTNNAC	3 cut(s)	228, 802, 1198
Hpy188I	TCNGA	6 cut(s)	193, 432, 519, 537, 721, 1000
Hpy188III	TCNNGA	4 cut(s)	320, 394, 745, 1091
Hpy8I	GTNNAC	3 cut(s)	228, 802, 1198
HpyAV	CCTTC	7 cut(s)	77, 103, 307, 477, 580, 820, 1214
HpyCH4III	ACNGT	6 cut(s)	140, 639, 877, 920, 1143, 1184
HpyCH4IV	ACGT	2 cut(s)	252, 1149
HpyF10VI	GCNNNNNNNGC	5 cut(s)	205, 214, 692, 764, 960
HpyF3I	CTNAG	8 cut(s)	63, 192, 218, 440, 534, 720, 743, 912
HpySE526I	ACGT	2 cut(s)	252, 1149
HspAI	GCGC	2 cut(s)	1167, 1210
Kzo9I	GATC	4 cut(s)	267, 331, 367, 475
LmnI	GCTCC	1 cut(s)	665
Lsp1109I	GCAGC	1 cut(s)	779
LweI	GCATC	5 cut(s)	19, 37, 83, 941, 1092
MaeII	ACGT	2 cut(s)	252, 1149
MaeIII	GTNAC	1 cut(s)	713
MalI	GATC	4 cut(s)	269, 333, 369, 477
MbiI	CCGCTC	1 cut(s)	189
MboI	GATC	4 cut(s)	267, 331, 367, 475
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	1 cut(s)	1069
MlsI	TGGCCA	3 cut(s)	199, 643, 686
MluCI	AATT	4 cut(s)	523, 762, 867, 1112
MluNI	TGGCCA	3 cut(s)	199, 643, 686
Mox20I	TGGCCA	3 cut(s)	199, 643, 686
MscI	TGGCCA	3 cut(s)	199, 643, 686
MseI	TTAA	2 cut(s)	155, 452
MslI	CAYNNNNRTG	3 cut(s)	308, 561, 1182
Msp20I	TGGCCA	3 cut(s)	199, 643, 686
MspA1I	CMGCKG	1 cut(s)	124
MspR9I	CCNGG	1 cut(s)	1107
Mva1269I	GAATGC	1 cut(s)	963
MvaI	CCWGG	1 cut(s)	1107
MvnI	CGCG	1 cut(s)	1212
MwoI	GCNNNNNNNGC	5 cut(s)	205, 214, 692, 764, 960
NcoI	CCATGG	1 cut(s)	547
NdeII	GATC	4 cut(s)	267, 331, 367, 475
NlaIV	GGNNCC	1 cut(s)	318
NmuCI	GTSAC	1 cut(s)	713
NspI	RCATGY	4 cut(s)	72, 402, 424, 506
PagI	TCATGA	1 cut(s)	393
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PctI	GAATGC	1 cut(s)	963
PfeI	GAWTC	2 cut(s)	1036, 1087
PkrI	GCNGC	1 cut(s)	769
Ppu21I	YACGTR	1 cut(s)	1150
Psp1406I	AACGTT	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	1105
PspGI	CCWGG	1 cut(s)	1105
PspN4I	GGNNCC	1 cut(s)	318
PsuI	RGATCY	1 cut(s)	475
PvuII	CAGCTG	1 cut(s)	124
RsaI	GTAC	3 cut(s)	134, 917, 1152
RsaNI	GTAC	3 cut(s)	133, 916, 1151
RseI	CAYNNNNRTG	3 cut(s)	308, 561, 1182
SaqAI	TTAA	2 cut(s)	155, 452
SatI	GCNGC	1 cut(s)	768
Sau3AI	GATC	4 cut(s)	267, 331, 367, 475
ScrFI	CCNGG	1 cut(s)	1107
SduI	GDGCHC	1 cut(s)	1069
SfaNI	GCATC	5 cut(s)	19, 37, 83, 941, 1092
SmiMI	CAYNNNNRTG	3 cut(s)	308, 561, 1182
Sse9I	AATT	4 cut(s)	523, 762, 867, 1112
SsiI	CCGC	1 cut(s)	187
StyD4I	CCNGG	1 cut(s)	1105
StyI	CCWWGG	1 cut(s)	547
TaaI	ACNGT	6 cut(s)	140, 639, 877, 920, 1143, 1184
TaiI	ACGT	2 cut(s)	255, 1152
TaqI	TCGA	1 cut(s)	1116
TasI	AATT	4 cut(s)	523, 762, 867, 1112
TfiI	GAWTC	2 cut(s)	1036, 1087
Tru1I	TTAA	2 cut(s)	155, 452
Tru9I	TTAA	2 cut(s)	155, 452
TscAI	CASTG	5 cut(s)	13, 143, 310, 565, 1074
TseFI	GTSAC	1 cut(s)	713
TseI	GCWGC	1 cut(s)	767
Tsp45I	GTSAC	1 cut(s)	713
TspDTI	ATGAA	7 cut(s)	326, 326, 399, 450, 599, 802, 841
TspGWI	ACGGA	1 cut(s)	917
TspRI	CASTG	5 cut(s)	13, 143, 310, 565, 1074
XagI	CCTNNNNNAGG	1 cut(s)	980
XapI	RAATTY	1 cut(s)	1112
XceI	RCATGY	4 cut(s)	72, 402, 424, 506
XmiI	GTMKAC	1 cut(s)	801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.