AT5G04980

Inositol polyphosphate phosphatase, catalytic domain homologues

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
1468227 .. 1471071
2845 bp
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UTR
Exon/CDS
Intron
AT5G04980.3

Sequence Viewer

Length: 1314 bp
ATGCCTACTCAGCAAATCCAATCCTTAAGAGTCTTTGTGGCGACATGGAACGTGGGAGGAAAATCTCCACACTCTGGTCTTAATCTTGATGCTTTGCTTCACGTGCATAGTGAATTCGATGTATACGTTTTAGGTTTTCAGGAGATTGTTCCATTGAATGCTGGAAATGTCCTTGTTCTTGGAGACAACGAGCCTGCTGCGAAATGGTTAGCGATGATCAATCAATCCTTAAACAAATCATCATCATCTTCTGGAGGAAGACTTAGCCCAAAAACTCCATCTTTTGGCGCTGGATCGATGTTCTTTGCGAAACCTTCTTTGAAGAAGATTAGTGAGAGTTTCAGAACAGAGTGCAGGAGAAAGCTGAAGATCTGTAACTGCAGCACTTTCTCTGAAGATATTGTAAGAAAGTATGGGAGAGAATCTTGTTTCAGATGTCCTGAAGGTCTAGTTAACCAATCCGGTGTACTTTCTGATGACGAAGAAGATGAAGATGATGACGATGATGATGAAGACGAGGATGAAGGAGGAGGAAAAGTTGCTTCTCTTGTAAGCAACCAAATGACGATGAAGTATGGCTTAGTAGCATCAAAGCAAATGGTGGGTATATTCCTTACTGTGTGGATGAGAAAGGAACTTATTCAACACGTTTCTCATCTCAGAATCTCCTCCGTCACCCGCGGAATCATGGGTTGCTTAGGAAACAAGGGATGCATAGCTGTGAGTTTGCAGCTCTACAAGACGAGCTTCTGCTTCATCTGCAGTCATCTAGCTTCTGGTGAGAGAGAAGGAGACGAACGCCGCAGAAACTTAGATGTGATCGAGATTCTCAAGAACACAAGTTTCCCTAGAATATGCAGAACCTCTTTTACTCGTGTCCCTGATCGAATCACAAAGCACGATCGGGTCATATGGCTTGGAGATTTGAACTACAGAATAGCTTTGAGTTACTCAGAAACAAAGACCCTCTTGGATAAAAACGCTTGGGACACTCTTCTCAACAAAGATCAGCTCAAGATTGAAAGAGACGCAGGTCGAGTGTTCAAAGGATGGCATGAAGGAAAAATCTTCTTTGCACCAACTTATAAGTACTCTTATAACTCTGATGCTTACGCGGGAGACACTAGCAAAGAAAAGAAGAACAAGAGAAGAACTCCGGCCTGGTGCGATAGGATTCTTTGGCACGGTGATGGAATCCGGCAGCTCTCGTACGTGCGCGGCGAGTCACGTTTCTCCGATCATCGGCCGGTTTGCTCCGTGTTTGTCGTCGACGTTGAGGTTTGCGAGGGTAAAACCGGAACTAGGAGACAATAA

Protein Analysis

437

Amino Acids

49.32

Weight (kDa)

8.58

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos2 PF22669 15 - 83 8.7e-06 Endonuclease/Exonuclease/phosphatase family 2
Exo_endo_phos2 PF22669 181 - 418 2.4e-65 Endonuclease/Exonuclease/phosphatase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1086, 1098
Acc36I ACCTGC 1 cut(s) 1022
AccB7I CCANNNNNTGG 2 cut(s) 74, 284
AccI GTMKAC 2 cut(s) 123, 1269
AccII CGCG 3 cut(s) 681, 1115, 1218
AciI CCGC 5 cut(s) 679, 681, 802, 1115, 1218
AclWI GGATC 1 cut(s) 301
AcoI YGGCCR 1 cut(s) 1244
AcsI RAATTY 1 cut(s) 113
AcuI CTGAAG 3 cut(s) 386, 414, 462
AcvI CACGTG 1 cut(s) 103
AfaI GTAC 3 cut(s) 468, 1091, 1211
AfiI CCNNNNNNNGG 4 cut(s) 74, 284, 1242, 1302
AflII CTTAAG 1 cut(s) 25
AflIII ACRYGT 1 cut(s) 646
AgsI TTSAA 6 cut(s) 157, 322, 644, 928, 1022, 1045
AjnI CCWGG 1 cut(s) 1160
AluBI AGCT 8 cut(s) 364, 719, 733, 747, 773, 941, 1012, 1204
AluI AGCT 8 cut(s) 364, 719, 733, 747, 773, 941, 1012, 1204
Alw26I GTCTC 5 cut(s) 177, 786, 1020, 1113, 1300
AlwI GGATC 1 cut(s) 301
AoxI GGCC 2 cut(s) 1158, 1244
ApeKI GCWGC 4 cut(s) 197, 381, 730, 1201
ApoI RAATTY 1 cut(s) 113
Asp700I GAANNNNTTC 1 cut(s) 639
AspLEI GCGC 2 cut(s) 290, 1218
AsuHPI GGTGA 3 cut(s) 667, 791, 1199
BauI CACGAG 1 cut(s) 873
BbrPI CACGTG 1 cut(s) 103
BbsI GAAGAC 2 cut(s) 265, 519
BbvI GCAGC 4 cut(s) 184, 393, 742, 1213
BccI CCATC 3 cut(s) 286, 1044, 1184
BcgI CGANNNNNNTGC 2 cut(s) 179, 213
BciT130I CCWGG 1 cut(s) 1162
BclI TGATCA 1 cut(s) 216
BcoDI GTCTC 5 cut(s) 177, 786, 1020, 1113, 1300
BfaI CTAG 5 cut(s) 449, 770, 849, 1125, 1302
BfmI CTRYAG 3 cut(s) 379, 760, 931
BfoI RGCGCY 1 cut(s) 291
BfrI CTTAAG 1 cut(s) 25
BfuAI ACCTGC 1 cut(s) 1022
BglII AGATCT 1 cut(s) 369
BisI GCNGC 6 cut(s) 198, 382, 731, 802, 1202, 1219
BlsI GCNGC 6 cut(s) 199, 383, 732, 803, 1203, 1220
BmcAI AGTACT 1 cut(s) 1091
Bme1390I CCNGG 1 cut(s) 1162
BmrFI CCNGG 1 cut(s) 1162
BmsI GCATC 4 cut(s) 79, 596, 701, 1096
BoxI GACNNNNGTC 1 cut(s) 1032
BpiI GAAGAC 2 cut(s) 265, 519
BplI GAGNNNNNCTC 2 cut(s) 1138, 1170
BpmI CTGGAG 1 cut(s) 273
Bpu10I CCTNAGC 1 cut(s) 697
BpuEI CTTGAG 2 cut(s) 815, 998
Bsa29I ATCGAT 1 cut(s) 296
BsaAI YACGTR 2 cut(s) 103, 1213
BsaJI CCNNGG 1 cut(s) 679
BsaWI WCCGGW 2 cut(s) 461, 1295
BsaXI ACNNNNNCTCC 2 cut(s) 522, 552
Bsc4I CCNNNNNNNGG 4 cut(s) 74, 284, 1242, 1302
Bse118I RCCGGY 1 cut(s) 1246
BseBI CCWGG 1 cut(s) 1162
BseCI ATCGAT 1 cut(s) 296
BseDI CCNNGG 1 cut(s) 679
BseGI GGATG 4 cut(s) 526, 630, 716, 1055
BseLI CCNNNNNNNGG 4 cut(s) 74, 284, 1242, 1302
BseMII CTCAG 3 cut(s) 23, 673, 966
BseRI GAGGAG 2 cut(s) 543, 658
BseX3I CGGCCG 1 cut(s) 1244
BseXI GCAGC 4 cut(s) 184, 393, 742, 1213
BsgI GTGCAG 1 cut(s) 373
Bsh1236I CGCG 3 cut(s) 681, 1115, 1218
Bsh1285I CGRYCG 2 cut(s) 904, 1247
BshFI GGCC 2 cut(s) 1160, 1246
BshVI ATCGAT 1 cut(s) 296
BsiEI CGRYCG 2 cut(s) 904, 1247
BsiSI CCGG 5 cut(s) 462, 1157, 1198, 1247, 1296
BsiWI CGTACG 1 cut(s) 1209
BslFI GGGAC 2 cut(s) 863, 1001
BslI CCNNNNNNNGG 4 cut(s) 74, 284, 1242, 1302
BsmAI GTCTC 5 cut(s) 177, 786, 1020, 1113, 1300
BsmBI CGTCTC 2 cut(s) 786, 1020
BsmFI GGGAC 2 cut(s) 863, 1001
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 2 cut(s) 1160, 1246
Bsp143I GATC 8 cut(s) 216, 293, 369, 819, 883, 901, 1006, 1237
BspACI CCGC 5 cut(s) 679, 681, 802, 1115, 1218
BspANI GGCC 2 cut(s) 1160, 1246
BspCNI CTCAG 3 cut(s) 22, 672, 965
BspDI ATCGAT 1 cut(s) 296
BspFNI CGCG 3 cut(s) 681, 1115, 1218
BspMAI CTGCAG 2 cut(s) 383, 764
BspMI ACCTGC 1 cut(s) 1022
BspPI GGATC 1 cut(s) 301
BspTI CTTAAG 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 1246
BssAI RCCGGY 1 cut(s) 1246
BssECI CCNNGG 1 cut(s) 679
BssMI GATC 8 cut(s) 216, 293, 369, 819, 883, 901, 1006, 1237
BssNAI GTATAC 1 cut(s) 124
BssSI CACGAG 1 cut(s) 873
Bst1107I GTATAC 1 cut(s) 124
Bst2BI CACGAG 1 cut(s) 873
Bst2UI CCWGG 1 cut(s) 1162
Bst4CI ACNGT 2 cut(s) 619, 1187
Bst6I CTCTTC 1 cut(s) 999
BstAFI CTTAAG 1 cut(s) 25
BstBAI YACGTR 2 cut(s) 103, 1213
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 7 cut(s) 9, 263, 580, 659, 697, 811, 952
BstDSI CCRYGG 1 cut(s) 679
BstF5I GGATG 4 cut(s) 526, 630, 716, 1055
BstFNI CGCG 3 cut(s) 681, 1115, 1218
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 2 cut(s) 290, 1218
BstKTI GATC 8 cut(s) 219, 296, 372, 822, 886, 904, 1009, 1240
BstMAI GTCTC 5 cut(s) 177, 786, 1020, 1113, 1300
BstMBI GATC 8 cut(s) 216, 293, 369, 819, 883, 901, 1006, 1237
BstMCI CGRYCG 2 cut(s) 904, 1247
BstMWI GCNNNNNNNGC 3 cut(s) 10, 103, 759
BstNI CCWGG 1 cut(s) 1162
BstPAI GACNNNNGTC 1 cut(s) 1032
BstSCI CCNGG 1 cut(s) 1160
BstSFI CTRYAG 3 cut(s) 379, 760, 931
BstUI CGCG 3 cut(s) 681, 1115, 1218
BstV1I GCAGC 4 cut(s) 184, 393, 742, 1213
BstV2I GAAGAC 2 cut(s) 265, 519
BstX2I RGATCY 1 cut(s) 369
BstYI RGATCY 1 cut(s) 369
BstZ17I GTATAC 1 cut(s) 124
BstZI CGGCCG 1 cut(s) 1244
Bsu15I ATCGAT 1 cut(s) 296
BsuRI GGCC 2 cut(s) 1160, 1246
BsuTUI ATCGAT 1 cut(s) 296
BtgI CCRYGG 1 cut(s) 679
BtgZI GCGATG 1 cut(s) 227
BtsCI GGATG 4 cut(s) 526, 630, 716, 1055
BveI ACCTGC 1 cut(s) 1022
Cac8I GCNNGC 1 cut(s) 195
CfoI GCGC 2 cut(s) 290, 1218
Cfr10I RCCGGY 1 cut(s) 1246
Cfr42I CCGCGG 1 cut(s) 682
ClaI ATCGAT 1 cut(s) 296
CseI GACGC 1 cut(s) 1037
Csp6I GTAC 3 cut(s) 467, 1090, 1210
CviAII CATG 3 cut(s) 45, 688, 1055
CviQI GTAC 3 cut(s) 467, 1090, 1210
DdeI CTNAG 7 cut(s) 9, 263, 580, 659, 697, 811, 952
DpnI GATC 8 cut(s) 218, 295, 371, 821, 885, 903, 1008, 1239
DpnII GATC 8 cut(s) 216, 293, 369, 819, 883, 901, 1006, 1237
EaeI YGGCCR 1 cut(s) 1244
EagI CGGCCG 1 cut(s) 1244
Eam1104I CTCTTC 1 cut(s) 999
EarI CTCTTC 1 cut(s) 999
EclXI CGGCCG 1 cut(s) 1244
Eco52I CGGCCG 1 cut(s) 1244
Eco57I CTGAAG 3 cut(s) 386, 414, 462
Eco72I CACGTG 1 cut(s) 103
EcoRI GAATTC 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 1160
EcoT22I ATGCAT 1 cut(s) 716
Esp3I CGTCTC 2 cut(s) 786, 1020
FaeI CATG 3 cut(s) 48, 691, 1058
FalI AAGNNNNNCTT 6 cut(s) 563, 595, 731, 763, 953, 985
FaqI GGGAC 2 cut(s) 863, 1001
FatI CATG 3 cut(s) 44, 687, 1054
FauI CCCGC 2 cut(s) 686, 1108
FauNDI CATATG 1 cut(s) 911
FbaI TGATCA 1 cut(s) 216
FblI GTMKAC 2 cut(s) 123, 1269
Fnu4HI GCNGC 6 cut(s) 198, 382, 731, 802, 1202, 1219
FokI GGATG 4 cut(s) 533, 637, 723, 1062
Fsp4HI GCNGC 6 cut(s) 198, 382, 731, 802, 1202, 1219
FspBI CTAG 5 cut(s) 449, 770, 849, 1125, 1302
GlaI GCGC 2 cut(s) 289, 1217
GluI GCNGC 6 cut(s) 198, 382, 731, 802, 1202, 1219
GsuI CTGGAG 1 cut(s) 273
HaeII RGCGCY 1 cut(s) 291
HaeIII GGCC 2 cut(s) 1160, 1246
HapII CCGG 5 cut(s) 462, 1157, 1198, 1247, 1296
HgaI GACGC 1 cut(s) 1037
HhaI GCGC 2 cut(s) 290, 1218
Hin1II CATG 3 cut(s) 48, 691, 1058
Hin6I GCGC 2 cut(s) 288, 1216
HinP1I GCGC 2 cut(s) 288, 1216
HincII GTYRAC 2 cut(s) 454, 1270
HindII GTYRAC 2 cut(s) 454, 1270
HinfI GANTC 9 cut(s) 30, 422, 663, 684, 826, 888, 1174, 1194, 1223
HpaI GTTAAC 1 cut(s) 454
HpaII CCGG 5 cut(s) 462, 1157, 1198, 1247, 1296
HphI GGTGA 3 cut(s) 667, 791, 1199
Hpy166II GTNNAC 4 cut(s) 124, 454, 467, 1270
Hpy188I TCNGA 8 cut(s) 344, 394, 434, 475, 662, 955, 1105, 1237
Hpy188III TCNNGA 7 cut(s) 86, 140, 252, 440, 823, 832, 1015
Hpy8I GTNNAC 4 cut(s) 124, 454, 467, 1270
Hpy99I CGWCG 2 cut(s) 1271, 1274
HpyAV CCTTC 5 cut(s) 324, 437, 518, 782, 1052
HpyCH4III ACNGT 2 cut(s) 619, 1187
HpyCH4IV ACGT 7 cut(s) 51, 102, 126, 648, 1212, 1228, 1272
HpyCH4V TGCA 8 cut(s) 106, 354, 381, 714, 730, 762, 858, 1076
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 103, 759
HpyF3I CTNAG 7 cut(s) 9, 263, 580, 659, 697, 811, 952
HpySE526I ACGT 7 cut(s) 51, 102, 126, 648, 1212, 1228, 1272
Hsp92II CATG 3 cut(s) 48, 691, 1058
HspAI GCGC 2 cut(s) 288, 1216
Ksp22I TGATCA 1 cut(s) 216
KspAI GTTAAC 1 cut(s) 454
KspI CCGCGG 1 cut(s) 682
Kzo9I GATC 8 cut(s) 216, 293, 369, 819, 883, 901, 1006, 1237
LmnI GCTCC 1 cut(s) 1259
Lsp1109I GCAGC 4 cut(s) 184, 393, 742, 1213
LweI GCATC 4 cut(s) 79, 596, 701, 1096
MaeI CTAG 5 cut(s) 449, 770, 849, 1125, 1302
MaeII ACGT 7 cut(s) 51, 102, 126, 648, 1212, 1228, 1272
MaeIII GTNAC 4 cut(s) 374, 673, 947, 1224
MalI GATC 8 cut(s) 218, 295, 371, 821, 885, 903, 1008, 1239
MboI GATC 8 cut(s) 216, 293, 369, 819, 883, 901, 1006, 1237
MflI RGATCY 1 cut(s) 369
MluCI AATT 1 cut(s) 113
MlyI GAGTC 2 cut(s) 39, 1232
Mph1103I ATGCAT 1 cut(s) 716
MroXI GAANNNNTTC 1 cut(s) 639
MseI TTAA 4 cut(s) 26, 81, 230, 453
MslI CAYNNNNRTG 2 cut(s) 719, 1188
MspA1I CMGCKG 1 cut(s) 681
MspCI CTTAAG 1 cut(s) 25
MspI CCGG 5 cut(s) 462, 1157, 1198, 1247, 1296
MspR9I CCNGG 1 cut(s) 1162
Mva1269I GAATGC 1 cut(s) 163
MvaI CCWGG 1 cut(s) 1162
MvnI CGCG 3 cut(s) 681, 1115, 1218
MwoI GCNNNNNNNGC 3 cut(s) 10, 103, 759
NdeI CATATG 1 cut(s) 911
NdeII GATC 8 cut(s) 216, 293, 369, 819, 883, 901, 1006, 1237
NlaIII CATG 3 cut(s) 48, 691, 1058
NmuCI GTSAC 2 cut(s) 673, 1224
NsiI ATGCAT 1 cut(s) 716
PcsI WCGNNNNNNNCGW 2 cut(s) 123, 1218
PctI GAATGC 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 639
PfeI GAWTC 7 cut(s) 422, 663, 684, 826, 888, 1174, 1194
Pfl23II CGTACG 1 cut(s) 1209
PflMI CCANNNNNTGG 2 cut(s) 74, 284
PkrI GCNGC 6 cut(s) 199, 383, 732, 803, 1203, 1220
Ple19I CGATCG 1 cut(s) 904
PleI GAGTC 2 cut(s) 38, 1231
PmaCI CACGTG 1 cut(s) 103
PmlI CACGTG 1 cut(s) 103
PpsI GAGTC 2 cut(s) 38, 1231
Ppu21I YACGTR 2 cut(s) 103, 1213
PshAI GACNNNNGTC 1 cut(s) 1032
PsiI TTATAA 2 cut(s) 1086, 1098
Psp6I CCWGG 1 cut(s) 1160
PspCI CACGTG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 1160
PspLI CGTACG 1 cut(s) 1209
PsrI GAACNNNNNNTAC 2 cut(s) 853, 885
PstI CTGCAG 2 cut(s) 383, 764
PsuI RGATCY 1 cut(s) 369
PvuI CGATCG 1 cut(s) 904
RsaI GTAC 3 cut(s) 468, 1091, 1211
RsaNI GTAC 3 cut(s) 467, 1090, 1210
RseI CAYNNNNRTG 2 cut(s) 719, 1188
SacII CCGCGG 1 cut(s) 682
SalI GTCGAC 1 cut(s) 1268
SaqAI TTAA 4 cut(s) 26, 81, 230, 453
SatI GCNGC 6 cut(s) 198, 382, 731, 802, 1202, 1219
Sau3AI GATC 8 cut(s) 216, 293, 369, 819, 883, 901, 1006, 1237
ScaI AGTACT 1 cut(s) 1091
SchI GAGTC 2 cut(s) 39, 1232
ScrFI CCNGG 1 cut(s) 1162
SfaNI GCATC 4 cut(s) 79, 596, 701, 1096
SfcI CTRYAG 3 cut(s) 379, 760, 931
Sfr303I CCGCGG 1 cut(s) 682
SgrBI CCGCGG 1 cut(s) 682
SgrDI CGTCGACG 1 cut(s) 1268
SmiMI CAYNNNNRTG 2 cut(s) 719, 1188
SmlI CTYRAG 3 cut(s) 25, 830, 1013
SmoI CTYRAG 3 cut(s) 25, 830, 1013
Sse9I AATT 1 cut(s) 113
SsiI CCGC 5 cut(s) 679, 681, 802, 1115, 1218
SspMI CTAG 5 cut(s) 449, 770, 849, 1125, 1302
StyD4I CCNGG 1 cut(s) 1160
TaaI ACNGT 2 cut(s) 619, 1187
TaiI ACGT 7 cut(s) 54, 105, 129, 651, 1215, 1231, 1275
TaqI TCGA 6 cut(s) 117, 296, 822, 886, 1036, 1269
TasI AATT 1 cut(s) 113
TatI WGTACW 2 cut(s) 466, 1089
TauI GCSGC 2 cut(s) 804, 1221
TfiI GAWTC 7 cut(s) 422, 663, 684, 826, 888, 1174, 1194
Tru1I TTAA 4 cut(s) 26, 81, 230, 453
Tru9I TTAA 4 cut(s) 26, 81, 230, 453
TseFI GTSAC 2 cut(s) 673, 1224
TseI GCWGC 4 cut(s) 197, 381, 730, 1201
Tsp45I GTSAC 2 cut(s) 673, 1224
TspDTI ATGAA 6 cut(s) 504, 525, 537, 584, 745, 1071
TspGWI ACGGA 2 cut(s) 661, 1246
Van91I CCANNNNNTGG 2 cut(s) 74, 284
Vha464I CTTAAG 1 cut(s) 25
XapI RAATTY 1 cut(s) 113
XmiI GTMKAC 2 cut(s) 123, 1269
XmnI GAANNNNTTC 1 cut(s) 639
XspI CTAG 5 cut(s) 449, 770, 849, 1125, 1302
ZrmI AGTACT 1 cut(s) 1091
Zsp2I ATGCAT 1 cut(s) 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.