Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003538

Physical Location & Seq

Genomic Coordinates Forward (+)

3545159 .. 3548396

Gene Structure 3238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g04110.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGACTGTCAGCAAACAAGACGTGAAAAAGAAGCAGTCTACTCCGGCAGTTGACATTCAATCTACAAGTGAGACAGGGTCTCAAATGCCTGCTGGTCAATACGCTCAGTCCTTTCGGGTTTTTGTAGCGACATGGAATGTAGGAGGAAAATCTCCTCATATTGGCCTTAATCTGGATGATTTTCTTCAAGTTTATAATGAATCAGACATATATGTCTTGGGTTTTCAGGAAATTGTTCCGTTAAATGCTGGAAATGTGCTAGTTCTAGATAAAAATGAACCTGCAGCAAAATGGCTTGCTTTAATCAATCAGTCACTAAACAAATCACCTGAGGGGTGTTCAACAAGCAAATCCAGCCTAGGTGGTTCGCGATTTTCATCAAAGCCTTCCCTTAAAAAGGTCAGTAAGGCTTTTAGGACAGAGAGCAAACGGAGGTTGAAGAGTTGCAACTGCCCTTTTGAACTAGAGAGGAAATACAGTAAAGATTTTTGTTTTAGATGCCAACAACCAAACATAAGCGAAGACGACCTTTCTTCAGAACCAGATGAGGACGGATCTAATGTCCTTGATATATCAGAAATTTCCATGACCTCTACTACCAACCAAATGAAGTACAGCCTTATAGCAAGTAAGCAAATGGTAGGAATTTTCGTGACTATTTGGGCGAGGAAACAGTGTATACAATATGTTAGCCACTTGAGAATCTCTTGCATCAGTCGTGGGATCATGGGATGCCTTGGAAACAAGGGCTGTATATCTGTGAGCTTTTTATTCCATCAGACAAGCTTTTGCTTTGTCTGCAGTCATTTGGCATCTGGTGAGAAGGAGGGCGATGAGCTTAGGAGAAATTTGGATGTATTAGAGATACTTAAAAGCACTCAGTTTCAGAAGATCTGCAAAACGGCTCATAGTAGGATGCCGGATAAAATTCTAGGACATGATATGGTCATATGGTTAGGAGACTTGAATTACCGCATTGCTTTGAGCTACTCTGAAACCCGAAAGCTTTTGGTGGACAATGACTGGGATGCACTTCTTGACAAAGACCAGCTCAAAACTGAGAGAGAAGCAGGGCGAGTATTCAAAGGATGGAAGGAGGGAAAAATCTACTTTGCACCTACTTACAAATACTTTTATAACTCAGACACTTATTTCGGAGAGATAAAAACATCGAAAAAGAAAAGAAGAACACCAGCCTGGTGTGACAGAATACTATGGCATGGAAATGGGATTAGACAACTTACTTACATAAGGGGAGAGTCCCGGTTCTCTGACCATCGGCCAGTGTGTGCAACATTTTGTGTGGATGCTGTAGTTAATGAGAATGAAACGAAGAAGGGATCACCTAGCTCTAATATGAAAATCGAAATTGAAGAGCTCTTACCAACTGCGAGATACCTGAACAACATTACTAAGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052866 GO:0071704 GO:0106019

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

474

Amino Acids

53.59

Weight (kDa)

8.97

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04980 AT5G04980 AT5G04980 AT5G04980
fragaria_vesca	FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890
malus_domestica	MD02G1266600.v1.1 MD03G1038300.v1.1 MD03G1038700.v1.1 MD07G1053100.v1.1
prunus_persica	Prupe.2G058000_v2.0.a1
pyrus_communis	pycom02g22810 pycom07g04110 pycom16g16630
rosa_chinensis	RchiOBHm_Chr1g0330941
rosa_laevigata	RLG00000029765
rosa_multiflora	Rmu_sc0002899.1_g000009
rosa_roxburghii	Rroxscaffold_4G00319600
rosa_rugosa	Rorug01G0091100 Rorug01G0091200 Rorug01G0091300 Rorug01G0091400
rosa_samantha	Rh1AG112700 Rh1BG086700 Rh1DG118200
rosa_wichuraiana	Rw1G009180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	195, 1137
AasI	GACNNNNNNGTC	1 cut(s)	212
Acc36I	ACCTGC	1 cut(s)	289
AccI	GTMKAC	2 cut(s)	38, 679
AccII	CGCG	1 cut(s)	370
AciI	CCGC	1 cut(s)	973
AclWI	GGATC	3 cut(s)	562, 731, 1348
AcoI	YGGCCR	1 cut(s)	1280
AcsI	RAATTY	4 cut(s)	579, 645, 847, 927
AcuI	CTGAAG	1 cut(s)	519
AfaI	GTAC	1 cut(s)	614
AfiI	CCNNNNNNNGG	3 cut(s)	161, 172, 397
AgsI	TTSAA	8 cut(s)	59, 188, 342, 439, 461, 967, 1084, 1373
AjiI	CACGTC	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	1196
AluBI	AGCT	8 cut(s)	765, 786, 838, 987, 1006, 1051, 1350, 1378
AluI	AGCT	8 cut(s)	765, 786, 838, 987, 1006, 1051, 1350, 1378
Alw21I	GWGCWC	1 cut(s)	1380
Alw26I	GTCTC	3 cut(s)	65, 84, 954
AlwI	GGATC	3 cut(s)	562, 731, 1348
AoxI	GGCC	2 cut(s)	163, 1280
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	4 cut(s)	579, 645, 847, 927
ArsI	GACNNNNNNTTYG	2 cut(s)	1136, 1168
Asp700I	GAANNNNTTC	1 cut(s)	234
AspA2I	CCTAGG	1 cut(s)	358
AsuC2I	CCSGG	1 cut(s)	1264
AsuHPI	GGTGA	3 cut(s)	318, 830, 1335
AvrII	CCTAGG	1 cut(s)	358
AxyI	CCTNAGG	1 cut(s)	330
BanII	GRGCYC	1 cut(s)	1380
BarI	GAAGNNNNNNTAC	2 cut(s)	1365, 1397
BbsI	GAAGAC	1 cut(s)	528
Bbv12I	GWGCWC	1 cut(s)	1380
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	3 cut(s)	783, 1083, 1284
BceAI	ACGGC	1 cut(s)	918
BciT130I	CCWGG	1 cut(s)	1198
BcnI	CCSGG	1 cut(s)	1264
BcoDI	GTCTC	3 cut(s)	65, 84, 954
BfaI	CTAG	6 cut(s)	260, 266, 359, 464, 932, 1347
BfmI	CTRYAG	3 cut(s)	282, 799, 1311
BfuAI	ACCTGC	1 cut(s)	289
BglII	AGATCT	1 cut(s)	891
BisI	GCNGC	1 cut(s)	285
BlnI	CCTAGG	1 cut(s)	358
BlsI	GCNGC	1 cut(s)	286
Bme1390I	CCNGG	2 cut(s)	1198, 1264
BmgBI	CACGTC	1 cut(s)	22
BmrFI	CCNGG	2 cut(s)	1198, 1264
BmrI	ACTGGG	1 cut(s)	1033
BmsI	GCATC	7 cut(s)	488, 720, 722, 821, 906, 1018, 1297
BmuI	ACTGGG	1 cut(s)	1033
BpiI	GAAGAC	1 cut(s)	528
Bpu10I	CCTNAGC	1 cut(s)	839
BpuEI	CTTGAG	1 cut(s)	718
BpuMI	CCSGG	1 cut(s)	1264
BsaBI	GATNNNNATC	1 cut(s)	376
BsaI	GGTCTC	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	358, 736
Bsc4I	CCNNNNNNNGG	3 cut(s)	161, 172, 397
Bse1I	ACTGG	2 cut(s)	1028, 1283
Bse21I	CCTNAGG	1 cut(s)	330
Bse3DI	GCAATG	1 cut(s)	975
Bse8I	GATNNNNATC	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	1198
BseDI	CCNNGG	2 cut(s)	358, 736
BseGI	GGATG	7 cut(s)	181, 737, 859, 921, 1033, 1094, 1312
BseJI	GATNNNNATC	1 cut(s)	376
BseLI	CCNNNNNNNGG	3 cut(s)	161, 172, 397
BseMI	GCAATG	1 cut(s)	975
BseMII	CTCAG	5 cut(s)	119, 321, 893, 1050, 1155
BseNI	ACTGG	2 cut(s)	1028, 1283
BseRI	GAGGAG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	296
Bsh1236I	CGCG	1 cut(s)	370
BshFI	GGCC	2 cut(s)	165, 1282
BsiHKAI	GWGCWC	1 cut(s)	1380
BsiSI	CCGG	3 cut(s)	44, 920, 1264
BslFI	GGGAC	1 cut(s)	1246
BslI	CCNNNNNNNGG	3 cut(s)	161, 172, 397
BsmAI	GTCTC	3 cut(s)	65, 84, 954
BsmFI	GGGAC	1 cut(s)	1246
BsnI	GGCC	2 cut(s)	165, 1282
Bso31I	GGTCTC	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	1380
Bsp143I	GATC	4 cut(s)	554, 723, 891, 1340
Bsp68I	TCGCGA	1 cut(s)	370
BspACI	CCGC	1 cut(s)	973
BspANI	GGCC	2 cut(s)	165, 1282
BspCNI	CTCAG	5 cut(s)	118, 322, 892, 1051, 1154
BspFNI	CGCG	1 cut(s)	370
BspMAI	CTGCAG	2 cut(s)	286, 803
BspMI	ACCTGC	1 cut(s)	289
BspPI	GGATC	3 cut(s)	562, 731, 1348
BspQI	GCTCTTC	1 cut(s)	1368
BspTNI	GGTCTC	1 cut(s)	84
BsrDI	GCAATG	1 cut(s)	975
BsrI	ACTGG	2 cut(s)	1028, 1283
BssECI	CCNNGG	2 cut(s)	358, 736
BssMI	GATC	4 cut(s)	554, 723, 891, 1340
BssNAI	GTATAC	1 cut(s)	680
BssT1I	CCWWGG	2 cut(s)	358, 736
Bst1107I	GTATAC	1 cut(s)	680
Bst2UI	CCWGG	1 cut(s)	1198
Bst4CI	ACNGT	3 cut(s)	7, 479, 675
Bst6I	CTCTTC	2 cut(s)	434, 1368
BstC8I	GCNNGC	2 cut(s)	90, 297
BstDEI	CTNAG	7 cut(s)	105, 330, 839, 879, 1059, 1141, 1413
BstENI	CCTNNNNNAGG	1 cut(s)	395
BstF5I	GGATG	7 cut(s)	181, 737, 859, 921, 1033, 1094, 1312
BstFNI	CGCG	1 cut(s)	370
BstKTI	GATC	4 cut(s)	557, 726, 894, 1343
BstMAI	GTCTC	3 cut(s)	65, 84, 954
BstMBI	GATC	4 cut(s)	554, 723, 891, 1340
BstMWI	GCNNNNNNNGC	2 cut(s)	354, 798
BstNI	CCWGG	1 cut(s)	1198
BstSCI	CCNGG	2 cut(s)	1196, 1262
BstSFI	CTRYAG	3 cut(s)	282, 799, 1311
BstUI	CGCG	1 cut(s)	370
BstV1I	GCAGC	1 cut(s)	296
BstV2I	GAAGAC	1 cut(s)	528
BstX2I	RGATCY	2 cut(s)	554, 891
BstYI	RGATCY	2 cut(s)	554, 891
BstZ17I	GTATAC	1 cut(s)	680
Bsu36I	CCTNAGG	1 cut(s)	330
BsuRI	GGCC	2 cut(s)	165, 1282
BtgZI	GCGATG	1 cut(s)	846
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	7 cut(s)	181, 737, 859, 921, 1033, 1094, 1312
BtsIMutI	CAGTG	2 cut(s)	680, 1290
BtuMI	TCGCGA	1 cut(s)	370
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	2 cut(s)	90, 297
Csp6I	GTAC	1 cut(s)	613
CviAII	CATG	5 cut(s)	132, 586, 727, 938, 1220
CviQI	GTAC	1 cut(s)	613
DdeI	CTNAG	7 cut(s)	105, 330, 839, 879, 1059, 1141, 1413
DpnI	GATC	4 cut(s)	556, 725, 893, 1342
DpnII	GATC	4 cut(s)	554, 723, 891, 1340
DrdI	GACNNNNNNGTC	1 cut(s)	212
DseDI	GACNNNNNNGTC	1 cut(s)	212
EaeI	YGGCCR	1 cut(s)	1280
Eam1104I	CTCTTC	2 cut(s)	434, 1368
EarI	CTCTTC	2 cut(s)	434, 1368
Ecl136II	GAGCTC	1 cut(s)	1378
Eco130I	CCWWGG	2 cut(s)	358, 736
Eco24I	GRGCYC	1 cut(s)	1380
Eco31I	GGTCTC	1 cut(s)	84
Eco53kI	GAGCTC	1 cut(s)	1378
Eco57I	CTGAAG	1 cut(s)	519
Eco81I	CCTNAGG	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	1378
EcoNI	CCTNNNNNAGG	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	1196
EcoT14I	CCWWGG	2 cut(s)	358, 736
EcoT38I	GRGCYC	1 cut(s)	1380
ErhI	CCWWGG	2 cut(s)	358, 736
FaeI	CATG	5 cut(s)	135, 589, 730, 941, 1223
FalI	AAGNNNNNCTT	2 cut(s)	513, 545
FaqI	GGGAC	1 cut(s)	1246
FatI	CATG	5 cut(s)	131, 585, 726, 937, 1219
FauNDI	CATATG	1 cut(s)	950
FblI	GTMKAC	2 cut(s)	38, 679
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	7 cut(s)	188, 744, 866, 928, 1040, 1101, 1319
FriOI	GRGCYC	1 cut(s)	1380
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	6 cut(s)	260, 266, 359, 464, 932, 1347
GluI	GCNGC	1 cut(s)	285
HaeIII	GGCC	2 cut(s)	165, 1282
HapII	CCGG	3 cut(s)	44, 920, 1264
Hin1II	CATG	5 cut(s)	135, 589, 730, 941, 1223
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HindIII	AAGCTT	2 cut(s)	784, 1004
HinfI	GANTC	3 cut(s)	200, 702, 1259
HpaII	CCGG	3 cut(s)	44, 920, 1264
HphI	GGTGA	3 cut(s)	318, 830, 1335
Hpy166II	GTNNAC	4 cut(s)	39, 52, 680, 1015
Hpy188I	TCNGA	9 cut(s)	205, 538, 577, 780, 888, 994, 1144, 1157, 1273
Hpy188III	TCNNGA	6 cut(s)	173, 227, 266, 369, 652, 1037
Hpy8I	GTNNAC	4 cut(s)	39, 52, 680, 1015
HpyAV	CCTTC	4 cut(s)	396, 817, 1087, 1330
HpyCH4III	ACNGT	3 cut(s)	7, 479, 675
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	8 cut(s)	284, 447, 711, 801, 897, 1031, 1115, 1292
HpyF10VI	GCNNNNNNNGC	2 cut(s)	354, 798
HpyF3I	CTNAG	7 cut(s)	105, 330, 839, 879, 1059, 1141, 1413
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	5 cut(s)	135, 589, 730, 941, 1223
Kzo9I	GATC	4 cut(s)	554, 723, 891, 1340
LguI	GCTCTTC	1 cut(s)	1368
Lsp1109I	GCAGC	1 cut(s)	296
LweI	GCATC	7 cut(s)	488, 720, 722, 821, 906, 1018, 1297
MaeI	CTAG	6 cut(s)	260, 266, 359, 464, 932, 1347
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	3 cut(s)	312, 652, 1202
MalI	GATC	4 cut(s)	556, 725, 893, 1342
MboI	GATC	4 cut(s)	554, 723, 891, 1340
MboII	GAAGA	8 cut(s)	176, 451, 525, 533, 901, 1197, 1345, 1385
MflI	RGATCY	2 cut(s)	554, 891
MhlI	GDGCHC	1 cut(s)	1380
MluCI	AATT	7 cut(s)	231, 579, 645, 847, 927, 967, 1368
MlyI	GAGTC	1 cut(s)	1268
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	6 cut(s)	168, 242, 302, 393, 870, 1317
MslI	CAYNNNNRTG	1 cut(s)	1224
MspI	CCGG	3 cut(s)	44, 920, 1264
MspR9I	CCNGG	2 cut(s)	1198, 1264
MvaI	CCWGG	1 cut(s)	1198
MvnI	CGCG	1 cut(s)	370
MwoI	GCNNNNNNNGC	2 cut(s)	354, 798
NciI	CCSGG	1 cut(s)	1264
NdeI	CATATG	1 cut(s)	950
NdeII	GATC	4 cut(s)	554, 723, 891, 1340
NlaIII	CATG	5 cut(s)	135, 589, 730, 941, 1223
NmuCI	GTSAC	3 cut(s)	312, 652, 1202
NruI	TCGCGA	1 cut(s)	370
PciSI	GCTCTTC	1 cut(s)	1368
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	200, 702
PflFI	GACNNNGTC	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	286
PleI	GAGTC	1 cut(s)	1267
PpsI	GAGTC	1 cut(s)	1267
PsiI	TTATAA	2 cut(s)	195, 1137
Psp124BI	GAGCTC	1 cut(s)	1380
Psp6I	CCWGG	1 cut(s)	1196
PspGI	CCWGG	1 cut(s)	1196
PstI	CTGCAG	2 cut(s)	286, 803
PsuI	RGATCY	2 cut(s)	554, 891
PsyI	GACNNNGTC	1 cut(s)	76
RruI	TCGCGA	1 cut(s)	370
RsaI	GTAC	1 cut(s)	614
RsaNI	GTAC	1 cut(s)	613
RseI	CAYNNNNRTG	1 cut(s)	1224
SacI	GAGCTC	1 cut(s)	1380
SapI	GCTCTTC	1 cut(s)	1368
SaqAI	TTAA	6 cut(s)	168, 242, 302, 393, 870, 1317
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	4 cut(s)	554, 723, 891, 1340
SchI	GAGTC	1 cut(s)	1268
ScrFI	CCNGG	2 cut(s)	1198, 1264
SduI	GDGCHC	1 cut(s)	1380
SfaNI	GCATC	7 cut(s)	488, 720, 722, 821, 906, 1018, 1297
SfcI	CTRYAG	3 cut(s)	282, 799, 1311
SmiMI	CAYNNNNRTG	1 cut(s)	1224
SmlI	CTYRAG	1 cut(s)	697
SmoI	CTYRAG	1 cut(s)	697
Sse9I	AATT	7 cut(s)	231, 579, 645, 847, 927, 967, 1368
SsiI	CCGC	1 cut(s)	973
SspMI	CTAG	6 cut(s)	260, 266, 359, 464, 932, 1347
SstI	GAGCTC	1 cut(s)	1380
StyD4I	CCNGG	2 cut(s)	1196, 1262
StyI	CCWWGG	2 cut(s)	358, 736
TaaI	ACNGT	3 cut(s)	7, 479, 675
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	2 cut(s)	1172, 1365
TasI	AATT	7 cut(s)	231, 579, 645, 847, 927, 967, 1368
TatI	WGTACW	1 cut(s)	612
TfiI	GAWTC	2 cut(s)	200, 702
Tru1I	TTAA	6 cut(s)	168, 242, 302, 393, 870, 1317
Tru9I	TTAA	6 cut(s)	168, 242, 302, 393, 870, 1317
TscAI	CASTG	2 cut(s)	680, 1290
TseFI	GTSAC	3 cut(s)	312, 652, 1202
TseI	GCWGC	1 cut(s)	284
Tsp45I	GTSAC	3 cut(s)	312, 652, 1202
TspDTI	ATGAA	6 cut(s)	213, 291, 366, 623, 1341, 1373
TspGWI	ACGGA	3 cut(s)	228, 445, 567
TspRI	CASTG	2 cut(s)	680, 1290
Tth111I	GACNNNGTC	1 cut(s)	76
XagI	CCTNNNNNAGG	1 cut(s)	395
XapI	RAATTY	4 cut(s)	579, 645, 847, 927
XbaI	TCTAGA	1 cut(s)	265
XmaJI	CCTAGG	1 cut(s)	358
XmiI	GTMKAC	2 cut(s)	38, 679
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	6 cut(s)	260, 266, 359, 464, 932, 1347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.