Rh1BG086700

Type I inositol 1,4,5-trisphosphate 5-phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0003538
Physical Location & Seq
Forward (+)
13736431 .. 13739862
3432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG086700.1

Sequence Viewer

Length: 675 bp
ATGGGCTGCCTTGGAAACAAGGGTTGTATTTCAGTGAGCTTTCTGTTCCATCAGACAAGCTTTTGTTTCATCTGCAGTCACTTGGCATCTGGTGAGAAAGAGGGGGATGAGCTTAGGAGAAATATGGATGTCTTAGAGATTCTTAAGAATACACAGTTTCCTAAGATTTGCAGAACAGCTTATAGTAGGGTTCCAGATAAAATTCTAGACCATGACCAGGTCATATGGTTAGGGGACTTGAACTACCGCATTGCATTGAGCTACTCTGAAACCCGGAAACTTTTAGTCGACAATGACTGGGATACACTTCTCGACAAAGATCAGCTCAAGATTGAAAGAGAAGCAGGGAGAGTATTCAAAGGATGGAAGGAAGGAAAAATTTACTTTGCACCTACTTACAAATACTTCTACAACTCCGACACTTATTTTGGCGAGATGAAAACATCAAAGAAGAAAAGGAGAACCCCAGCTTGGTGTGATAGAATACTGTGGCATGGAAATGGGATTAGACAACTGTCATACATACGTGGAGAGTCCCGTTTTTCTGACCACCGGCCAGTTTGTGCTGCATTTTTTGTGGATGTCATGGTTAATGAGGATGGATTGAAGAAGGAAATACCCAGCTCTAATATGAAAGTTGAAATTGAAGAGCTTTTACCAACACGTAACAGATAG

Protein Analysis

224

Amino Acids

26.2

Weight (kDa)

8.75

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos2 PF22669 2 - 189 1.5e-53 Endonuclease/Exonuclease/phosphatase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 288
AciI CCGC 1 cut(s) 247
AcoI YGGCCR 1 cut(s) 554
AcsI RAATTY 2 cut(s) 201, 378
AfiI CCNNNNNNNGG 2 cut(s) 217, 471
AflII CTTAAG 1 cut(s) 143
AflIII ACRYGT 1 cut(s) 662
AgsI TTSAA 6 cut(s) 241, 335, 358, 607, 641, 647
AjnI CCWGG 1 cut(s) 216
AjuI GAANNNNNNNTTGG 2 cut(s) 454, 486
AluBI AGCT 9 cut(s) 39, 60, 112, 179, 261, 325, 470, 624, 652
AluI AGCT 9 cut(s) 39, 60, 112, 179, 261, 325, 470, 624, 652
AoxI GGCC 1 cut(s) 554
ApeKI GCWGC 2 cut(s) 6, 566
ApoI RAATTY 2 cut(s) 201, 378
ArsI GACNNNNNNTTYG 2 cut(s) 410, 442
AsuC2I CCSGG 1 cut(s) 274
AsuHPI GGTGA 1 cut(s) 104
BarI GAAGNNNNNNTAC 2 cut(s) 639, 671
BbvI GCAGC 1 cut(s) 553
BccI CCATC 3 cut(s) 57, 357, 593
BciT130I CCWGG 1 cut(s) 218
BciVI GTATCC 1 cut(s) 295
BcnI CCSGG 1 cut(s) 274
BfaI CTAG 1 cut(s) 206
BfmI CTRYAG 1 cut(s) 73
BfrI CTTAAG 1 cut(s) 143
BfuI GTATCC 1 cut(s) 295
BisI GCNGC 2 cut(s) 7, 567
BlsI GCNGC 2 cut(s) 8, 568
Bme1390I CCNGG 2 cut(s) 218, 274
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 2 cut(s) 218, 274
BmrI ACTGGG 1 cut(s) 307
BmsI GCATC 1 cut(s) 95
BmuI ACTGGG 1 cut(s) 307
BoxI GACNNNNGTC 1 cut(s) 514
Bpu10I CCTNAGC 1 cut(s) 113
BpuEI CTTGAG 1 cut(s) 311
BpuMI CCSGG 1 cut(s) 274
BsaAI YACGTR 2 cut(s) 527, 665
BsaJI CCNNGG 1 cut(s) 10
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 471
Bse118I RCCGGY 1 cut(s) 552
Bse1I ACTGG 2 cut(s) 302, 557
Bse3DI GCAATG 1 cut(s) 249
BseBI CCWGG 1 cut(s) 218
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 5 cut(s) 112, 133, 368, 586, 604
BseLI CCNNNNNNNGG 2 cut(s) 217, 471
BseMI GCAATG 1 cut(s) 249
BseNI ACTGG 2 cut(s) 302, 557
BseXI GCAGC 1 cut(s) 553
BseYI CCCAGC 2 cut(s) 466, 620
BshFI GGCC 1 cut(s) 556
BsiSI CCGG 2 cut(s) 274, 553
BslFI GGGAC 2 cut(s) 248, 520
BslI CCNNNNNNNGG 2 cut(s) 217, 471
BsmFI GGGAC 2 cut(s) 248, 520
BsnI GGCC 1 cut(s) 556
Bsp143I GATC 1 cut(s) 319
BspACI CCGC 1 cut(s) 247
BspANI GGCC 1 cut(s) 556
BspLI GGNNCC 1 cut(s) 192
BspMAI CTGCAG 1 cut(s) 77
BspQI GCTCTTC 1 cut(s) 642
BspTI CTTAAG 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 552
BsrI ACTGG 2 cut(s) 302, 557
BssAI RCCGGY 1 cut(s) 552
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 1 cut(s) 319
BssT1I CCWWGG 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 3 cut(s) 156, 489, 516
Bst6I CTCTTC 1 cut(s) 642
BstAFI CTTAAG 1 cut(s) 143
BstBAI YACGTR 2 cut(s) 527, 665
BstDEI CTNAG 3 cut(s) 113, 133, 162
BstF5I GGATG 5 cut(s) 112, 133, 368, 586, 604
BstKTI GATC 1 cut(s) 322
BstMBI GATC 1 cut(s) 319
BstNI CCWGG 1 cut(s) 218
BstPAI GACNNNNGTC 1 cut(s) 514
BstSCI CCNGG 2 cut(s) 216, 272
BstSFI CTRYAG 1 cut(s) 73
BstV1I GCAGC 1 cut(s) 553
BsuI GTATCC 1 cut(s) 295
BsuRI GGCC 1 cut(s) 556
BtsCI GGATG 5 cut(s) 112, 133, 368, 586, 604
BtsIMutI CAGTG 1 cut(s) 39
Cfr10I RCCGGY 1 cut(s) 552
CsiI ACCWGGT 1 cut(s) 216
CviAII CATG 3 cut(s) 212, 494, 586
DdeI CTNAG 3 cut(s) 113, 133, 162
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
EaeI YGGCCR 1 cut(s) 554
Eam1104I CTCTTC 1 cut(s) 642
EarI CTCTTC 1 cut(s) 642
Eco130I CCWWGG 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 3 cut(s) 215, 497, 589
FaqI GGGAC 2 cut(s) 248, 520
FatI CATG 3 cut(s) 211, 493, 585
FauNDI CATATG 1 cut(s) 224
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 2 cut(s) 7, 567
FokI GGATG 5 cut(s) 119, 140, 375, 593, 611
Fsp4HI GCNGC 2 cut(s) 7, 567
FspBI CTAG 1 cut(s) 206
GluI GCNGC 2 cut(s) 7, 567
GsaI CCCAGC 2 cut(s) 470, 624
HaeIII GGCC 1 cut(s) 556
HapII CCGG 2 cut(s) 274, 553
Hin1II CATG 3 cut(s) 215, 497, 589
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 2 cut(s) 139, 533
HpaII CCGG 2 cut(s) 274, 553
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 4 cut(s) 54, 268, 418, 547
Hpy188III TCNNGA 4 cut(s) 194, 206, 311, 328
Hpy8I GTNNAC 1 cut(s) 289
HpyAV CCTTC 3 cut(s) 361, 365, 604
HpyCH4III ACNGT 3 cut(s) 156, 489, 516
HpyCH4IV ACGT 2 cut(s) 526, 664
HpyCH4V TGCA 5 cut(s) 75, 171, 254, 389, 569
HpyF3I CTNAG 3 cut(s) 113, 133, 162
HpySE526I ACGT 2 cut(s) 526, 664
Hsp92II CATG 3 cut(s) 215, 497, 589
Kzo9I GATC 1 cut(s) 319
LguI GCTCTTC 1 cut(s) 642
Lsp1109I GCAGC 1 cut(s) 553
LweI GCATC 1 cut(s) 95
MabI ACCWGGT 1 cut(s) 216
MaeI CTAG 1 cut(s) 206
MaeII ACGT 2 cut(s) 526, 664
MaeIII GTNAC 2 cut(s) 77, 665
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MboII GAAGA 3 cut(s) 463, 619, 659
MluCI AATT 3 cut(s) 201, 378, 642
MlyI GAGTC 1 cut(s) 542
MmeI TCCRAC 1 cut(s) 441
MnlI CCTC 2 cut(s) 94, 589
MseI TTAA 2 cut(s) 144, 591
MslI CAYNNNNRTG 1 cut(s) 498
MspCI CTTAAG 1 cut(s) 143
MspI CCGG 2 cut(s) 274, 553
MspR9I CCNGG 2 cut(s) 218, 274
MvaI CCWGG 1 cut(s) 218
NciI CCSGG 1 cut(s) 274
NdeI CATATG 1 cut(s) 224
NdeII GATC 1 cut(s) 319
NlaIII CATG 3 cut(s) 215, 497, 589
NlaIV GGNNCC 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 77
PciSI GCTCTTC 1 cut(s) 642
PfeI GAWTC 1 cut(s) 139
PflFI GACNNNGTC 1 cut(s) 218
PkrI GCNGC 2 cut(s) 8, 568
PleI GAGTC 1 cut(s) 541
PpsI GAGTC 1 cut(s) 541
Ppu21I YACGTR 2 cut(s) 527, 665
PshAI GACNNNNGTC 1 cut(s) 514
Psp6I CCWGG 1 cut(s) 216
PspFI CCCAGC 2 cut(s) 466, 620
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 192
PstI CTGCAG 1 cut(s) 77
PsyI GACNNNGTC 1 cut(s) 218
RseI CAYNNNNRTG 1 cut(s) 498
SalI GTCGAC 1 cut(s) 287
SapI GCTCTTC 1 cut(s) 642
SaqAI TTAA 2 cut(s) 144, 591
SatI GCNGC 2 cut(s) 7, 567
Sau3AI GATC 1 cut(s) 319
SchI GAGTC 1 cut(s) 542
ScrFI CCNGG 2 cut(s) 218, 274
SexAI ACCWGGT 1 cut(s) 216
SfaNI GCATC 1 cut(s) 95
SfcI CTRYAG 1 cut(s) 73
SmiMI CAYNNNNRTG 1 cut(s) 498
SmlI CTYRAG 2 cut(s) 143, 326
SmoI CTYRAG 2 cut(s) 143, 326
Sse9I AATT 3 cut(s) 201, 378, 642
SsiI CCGC 1 cut(s) 247
SspMI CTAG 1 cut(s) 206
StyD4I CCNGG 2 cut(s) 216, 272
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 3 cut(s) 156, 489, 516
TaiI ACGT 2 cut(s) 529, 667
TaqI TCGA 2 cut(s) 288, 312
TasI AATT 3 cut(s) 201, 378, 642
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 2 cut(s) 144, 591
Tru9I TTAA 2 cut(s) 144, 591
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 2 cut(s) 6, 566
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 3 cut(s) 58, 452, 647
TspRI CASTG 1 cut(s) 39
Tth111I GACNNNGTC 1 cut(s) 218
Vha464I CTTAAG 1 cut(s) 143
XapI RAATTY 2 cut(s) 201, 378
XbaI TCTAGA 1 cut(s) 205
XmiI GTMKAC 1 cut(s) 288
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.