FvH4_7g04890

Type I inositol 1,4,5-trisphosphate 5-phosphatase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
5308721 .. 5314864
6144 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g04890.t5

Sequence Viewer

Length: 1719 bp
ATGATTTGTATCCTTGTCTGGTTTTCCGGGAAGAATTTATTAATTTCTTTCAGGAATTTGGCCCAGTTGACTTTCTCGGGAAAACCCAACTCCAGTCCTGCCAACCTGTTTCATATATATGGGCTGCCACTCTTTTCATATATTCCCAGTCTCACCCATCTCCTCCTTCCTCAACTGTTTCTCCTTTCTGGTCCGCCAAACCCAATTGTTGAAAGAATTGCACTGTCAGAGATGACTGTTGAGAATCAAGACCTGAAAAAGAAGTCTTTTATTCACAAGATTTTCACCATGAAAGACAGAGAAGTAATTGGCTCATCTGATTTTCCTGAAATACAATCTGATCCGGTGCTTGACAGTCAATCAATAAGTGGCACAGGTGGTCAAATGCCTGTTGGTCGAGATGTTCAGTCCTTTCGAGTGTTTGTAGCAACCTGGAATGTAGGAGGGAAATCTCCCCATAGTAGCCTTAACCTGGACGATTTTCTTCAGGTTAATAATCCGGCAGACATATATGTTTTGGGTTTTCAGGAAATTGTTCCTTTAAATGCTGGAAACGTGTTAGTTCTAGAAGATAATGAACCTGCTGCAAAATGGCTTGCTTTAATCAATCAGTCGCTGAATAAATCAACAAATGGATCTTCAAGACTTACAGCGAGCCTTGGTGGTTCATTGTTTTTCTCAAAACCGTCCCTCAAAAAGGTCAGCAAGTCTTTTCGAACAGAGAGCAAGAGAAAGCTGAAGAGTTGCAACTGCACTTATGAACTAGAAAGGAAGCATAGTAAAGATTTCTGTTTTCGATGCCAACAACCAAATATAAATGAAGATGATTTGTCTTCTGAACCAGATGAAGAGGGATCTAATGGCTTTGATATCTCAGAAATGTCCATTTCTTCTACTACCAGCCAGATGAAGTATAGCCTTGTAGCAAGTAAGCAAATGGTAGGCATTTTTGTTACTCTTTGGGCAAGGAAGGAGTGTGTACAATATGTTAGTCACTTGAGAATCTCCTGCATTAGTCGTGGCATCATGGGCTGTCTTGGAAACAAGGGTTGTATTTCGGTCAGCTTTCTATTCCATCAGACAACCTTTTGTTTCGTCTGCAGTCACTTGGCATCCGGAGAGAAAGAGGGGGATGAGCTTAGGAGAAATATGGATGTCTTAGAGATTCTTAAGAATACACAGTTTCCTAAGATTTGCAGAACAGCTTATAGTAGGGTTCCAGATAAAATCCTAGACCATGACCAGGTCATATGGTTAGGGGACTTGAACTACCGCATTGCATTGAGCTACTCTGAAACCCGGAAACTTTTAGTCGACAATGACTGGGATACGCTTCTTGATAAAGATCAGCTCAAGATTGAAAGAGAAGCAGGGAGAGTATTCAAAGGATGGAAAGAAGGAAAAATTTACTTTGCGCCGACTTACAAATACTTCTACAACTCGGACACTTATTTTGGCGAGATGAAAACATCAAAGAAGAAAAGGAGAACACCAGCTTGGTGTGATAGAATACTATGGCATGGAAATGGGATTAGACAACTATCATACATACGTGGAGAGTCCCGTTTTTCTGACCACCGGCCAGTTTGTGCTACATTTATTGTGGATGTCGTGGTTAATGAGTATGGATTGAAGAAGGAAATACCTAGCTCTAATATGAAAGTTGAGATTGAAGAGCTTTTACCAACAGATAATAGATACTTGAGAAACTTGTACTAA

Protein Analysis

573

Amino Acids

65.03

Weight (kDa)

8.66

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos2 PF22669 98 - 166 1.8e-06 Endonuclease/Exonuclease/phosphatase family 2
Exo_endo_phos2 PF22669 254 - 485 1.1e-62 Endonuclease/Exonuclease/phosphatase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 589
AccI GTMKAC 1 cut(s) 1314
AccIII TCCGGA 1 cut(s) 1115
AciI CCGC 2 cut(s) 194, 1273
AclWI GGATC 3 cut(s) 335, 643, 862
AcoI YGGCCR 1 cut(s) 1580
AcsI RAATTY 3 cut(s) 34, 55, 1404
AcuI CTGAAG 2 cut(s) 470, 758
AfaI GTAC 2 cut(s) 981, 1715
AfiI CCNNNNNNNGG 3 cut(s) 472, 697, 1243
AflII CTTAAG 1 cut(s) 1169
AflIII ACRYGT 1 cut(s) 555
AgsI TTSAA 7 cut(s) 212, 642, 1267, 1361, 1384, 1633, 1673
AjnI CCWGG 3 cut(s) 431, 471, 1242
AjuI GAANNNNNNNTTGG 2 cut(s) 1480, 1512
AluBI AGCT 9 cut(s) 736, 1065, 1138, 1205, 1287, 1351, 1496, 1650, 1678
AluI AGCT 9 cut(s) 736, 1065, 1138, 1205, 1287, 1351, 1496, 1650, 1678
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 3 cut(s) 335, 643, 862
AlwNI CAGNNNCTG 1 cut(s) 616
Ama87I CYCGRG 1 cut(s) 76
Aor13HI TCCGGA 1 cut(s) 1115
AoxI GGCC 2 cut(s) 60, 1580
ApeKI GCWGC 2 cut(s) 124, 584
ApoI RAATTY 3 cut(s) 34, 55, 1404
ArsI GACNNNNNNTTYG 2 cut(s) 1436, 1468
AseI ATTAAT 1 cut(s) 41
Asp700I GAANNNNTTC 1 cut(s) 534
AspLEI GCGC 1 cut(s) 1417
AspS9I GGNCC 2 cut(s) 61, 191
AsuC2I CCSGG 2 cut(s) 28, 1300
AsuHPI GGTGA 2 cut(s) 145, 277
AsuII TTCGAA 1 cut(s) 715
AvaI CYCGRG 1 cut(s) 76
AvaII GGWCC 1 cut(s) 191
BarI GAAGNNNNNNTAC 2 cut(s) 1665, 1697
BbsI GAAGAC 1 cut(s) 825
BbvI GCAGC 2 cut(s) 111, 571
BccI CCATC 3 cut(s) 165, 1083, 1383
BciT130I CCWGG 3 cut(s) 433, 473, 1244
BciVI GTATCC 2 cut(s) 20, 1321
BcnI CCSGG 2 cut(s) 28, 1300
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 4 cut(s) 566, 764, 1232, 1647
BfmI CTRYAG 1 cut(s) 1099
BfrI CTTAAG 1 cut(s) 1169
BfuAI ACCTGC 1 cut(s) 589
BfuI GTATCC 2 cut(s) 20, 1321
BisI GCNGC 2 cut(s) 125, 585
BlsI GCNGC 2 cut(s) 126, 586
Bme1390I CCNGG 5 cut(s) 28, 433, 473, 1244, 1300
Bme18I GGWCC 1 cut(s) 191
BmeT110I CYCGRG 1 cut(s) 76
BmgT120I GGNCC 2 cut(s) 61, 191
BmiI GGNNCC 1 cut(s) 1218
BmrFI CCNGG 5 cut(s) 28, 433, 473, 1244, 1300
BmrI ACTGGG 3 cut(s) 58, 141, 1333
BmsI GCATC 3 cut(s) 788, 1032, 1121
BmuI ACTGGG 3 cut(s) 58, 141, 1333
BpiI GAAGAC 1 cut(s) 825
BpmI CTGGAG 1 cut(s) 76
Bpu10I CCTNAGC 1 cut(s) 1139
Bpu14I TTCGAA 1 cut(s) 715
BpuEI CTTGAG 2 cut(s) 1018, 1337
BpuMI CCSGG 2 cut(s) 28, 1300
BsaAI YACGTR 1 cut(s) 1553
BsaBI GATNNNNATC 2 cut(s) 8, 1344
BsaJI CCNNGG 1 cut(s) 658
BsaWI WCCGGW 2 cut(s) 343, 1115
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 3 cut(s) 472, 697, 1243
Bse118I RCCGGY 1 cut(s) 1578
Bse1I ACTGG 5 cut(s) 64, 93, 147, 1328, 1583
Bse3DI GCAATG 1 cut(s) 1275
Bse8I GATNNNNATC 2 cut(s) 8, 1344
BseAI TCCGGA 1 cut(s) 1115
BseBI CCWGG 3 cut(s) 433, 473, 1244
BseDI CCNNGG 1 cut(s) 658
BseGI GGATG 5 cut(s) 1112, 1138, 1159, 1394, 1612
BseJI GATNNNNATC 2 cut(s) 8, 1344
BseLI CCNNNNNNNGG 3 cut(s) 472, 697, 1243
BseMI GCAATG 1 cut(s) 1275
BseMII CTCAG 1 cut(s) 888
BseNI ACTGG 5 cut(s) 64, 93, 147, 1328, 1583
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 111, 571
BsgI GTGCAG 1 cut(s) 736
BshFI GGCC 2 cut(s) 62, 1582
BsiHKCI CYCGRG 1 cut(s) 76
BsiSI CCGG 6 cut(s) 27, 344, 500, 1116, 1300, 1579
BslFI GGGAC 3 cut(s) 673, 1274, 1546
BslI CCNNNNNNNGG 3 cut(s) 472, 697, 1243
BsmAI GTCTC 1 cut(s) 155
BsmFI GGGAC 3 cut(s) 673, 1274, 1546
BsnI GGCC 2 cut(s) 62, 1582
BsoBI CYCGRG 1 cut(s) 76
Bsp119I TTCGAA 1 cut(s) 715
Bsp13I TCCGGA 1 cut(s) 1115
Bsp1407I TGTACA 1 cut(s) 979
Bsp143I GATC 4 cut(s) 340, 635, 854, 1345
BspACI CCGC 2 cut(s) 194, 1273
BspANI GGCC 2 cut(s) 62, 1582
BspCNI CTCAG 1 cut(s) 887
BspEI TCCGGA 1 cut(s) 1115
BspLI GGNNCC 1 cut(s) 1218
BspMAI CTGCAG 1 cut(s) 1103
BspMI ACCTGC 1 cut(s) 589
BspPI GGATC 3 cut(s) 335, 643, 862
BspQI GCTCTTC 1 cut(s) 1668
BspT104I TTCGAA 1 cut(s) 715
BspTI CTTAAG 1 cut(s) 1169
BsrDI GCAATG 1 cut(s) 1275
BsrFI RCCGGY 1 cut(s) 1578
BsrGI TGTACA 1 cut(s) 979
BsrI ACTGG 5 cut(s) 64, 93, 147, 1328, 1583
BssAI RCCGGY 1 cut(s) 1578
BssECI CCNNGG 1 cut(s) 658
BssMI GATC 4 cut(s) 340, 635, 854, 1345
BssT1I CCWWGG 1 cut(s) 658
Bst2UI CCWGG 3 cut(s) 433, 473, 1244
Bst4CI ACNGT 6 cut(s) 177, 225, 238, 356, 687, 1182
Bst6I CTCTTC 3 cut(s) 734, 843, 1668
BstAFI CTTAAG 1 cut(s) 1169
BstAUI TGTACA 1 cut(s) 979
BstBAI YACGTR 1 cut(s) 1553
BstBI TTCGAA 1 cut(s) 715
BstC8I GCNNGC 2 cut(s) 597, 655
BstDEI CTNAG 4 cut(s) 874, 1139, 1159, 1188
BstENI CCTNNNNNAGG 1 cut(s) 695
BstF5I GGATG 5 cut(s) 1112, 1138, 1159, 1394, 1612
BstHHI GCGC 1 cut(s) 1417
BstKTI GATC 4 cut(s) 343, 638, 857, 1348
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 4 cut(s) 340, 635, 854, 1345
BstMWI GCNNNNNNNGC 1 cut(s) 1029
BstNI CCWGG 3 cut(s) 433, 473, 1244
BstSCI CCNGG 5 cut(s) 26, 431, 471, 1242, 1298
BstSFI CTRYAG 1 cut(s) 1099
BstV1I GCAGC 2 cut(s) 111, 571
BstV2I GAAGAC 1 cut(s) 825
BstX2I RGATCY 2 cut(s) 635, 854
BstYI RGATCY 2 cut(s) 635, 854
BsuI GTATCC 2 cut(s) 20, 1321
BsuRI GGCC 2 cut(s) 62, 1582
BtsCI GGATG 5 cut(s) 1112, 1138, 1159, 1394, 1612
BtsIMutI CAGTG 1 cut(s) 221
BveI ACCTGC 1 cut(s) 589
Cac8I GCNNGC 2 cut(s) 597, 655
CaiI CAGNNNCTG 1 cut(s) 616
CfoI GCGC 1 cut(s) 1417
Cfr10I RCCGGY 1 cut(s) 1578
Cfr13I GGNCC 2 cut(s) 61, 191
CsiI ACCWGGT 1 cut(s) 1242
Csp6I GTAC 2 cut(s) 980, 1714
CviAII CATG 4 cut(s) 289, 1027, 1238, 1520
CviQI GTAC 2 cut(s) 980, 1714
DdeI CTNAG 4 cut(s) 874, 1139, 1159, 1188
DpnI GATC 4 cut(s) 342, 637, 856, 1347
DpnII GATC 4 cut(s) 340, 635, 854, 1345
DraI TTTAAA 1 cut(s) 543
EaeI YGGCCR 1 cut(s) 1580
Eam1104I CTCTTC 3 cut(s) 734, 843, 1668
EarI CTCTTC 3 cut(s) 734, 843, 1668
EciI GGCGGA 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 658
Eco32I GATATC 1 cut(s) 871
Eco47I GGWCC 1 cut(s) 191
Eco57I CTGAAG 2 cut(s) 470, 758
Eco88I CYCGRG 1 cut(s) 76
EcoNI CCTNNNNNAGG 1 cut(s) 695
EcoRII CCWGG 3 cut(s) 431, 471, 1242
EcoRV GATATC 1 cut(s) 871
EcoT14I CCWWGG 1 cut(s) 658
ErhI CCWWGG 1 cut(s) 658
FaeI CATG 4 cut(s) 292, 1030, 1241, 1523
FaqI GGGAC 3 cut(s) 673, 1274, 1546
FatI CATG 4 cut(s) 288, 1026, 1237, 1519
FauNDI CATATG 1 cut(s) 1250
FblI GTMKAC 1 cut(s) 1314
Fnu4HI GCNGC 2 cut(s) 125, 585
FokI GGATG 5 cut(s) 1099, 1145, 1166, 1401, 1619
Fsp4HI GCNGC 2 cut(s) 125, 585
FspBI CTAG 4 cut(s) 566, 764, 1232, 1647
GlaI GCGC 1 cut(s) 1416
GluI GCNGC 2 cut(s) 125, 585
GsuI CTGGAG 1 cut(s) 76
HaeIII GGCC 2 cut(s) 62, 1582
HapII CCGG 6 cut(s) 27, 344, 500, 1116, 1300, 1579
HhaI GCGC 1 cut(s) 1417
Hin1II CATG 4 cut(s) 292, 1030, 1241, 1523
Hin6I GCGC 1 cut(s) 1415
HinP1I GCGC 1 cut(s) 1415
HincII GTYRAC 2 cut(s) 69, 1315
HindII GTYRAC 2 cut(s) 69, 1315
HinfI GANTC 4 cut(s) 244, 1002, 1165, 1559
HpaII CCGG 6 cut(s) 27, 344, 500, 1116, 1300, 1579
HphI GGTGA 2 cut(s) 145, 277
Hpy166II GTNNAC 3 cut(s) 69, 980, 1315
Hpy188I TCNGA 9 cut(s) 229, 319, 340, 838, 877, 1080, 1294, 1444, 1573
Hpy8I GTNNAC 3 cut(s) 69, 980, 1315
HpyAV CCTTC 4 cut(s) 176, 964, 1391, 1630
HpyCH4III ACNGT 6 cut(s) 177, 225, 238, 356, 687, 1182
HpyCH4IV ACGT 2 cut(s) 555, 1552
HpyCH4V TGCA 8 cut(s) 221, 587, 747, 753, 1011, 1101, 1197, 1280
HpyF10VI GCNNNNNNNGC 1 cut(s) 1029
HpyF3I CTNAG 4 cut(s) 874, 1139, 1159, 1188
HpySE526I ACGT 2 cut(s) 555, 1552
Hsp92II CATG 4 cut(s) 292, 1030, 1241, 1523
HspAI GCGC 1 cut(s) 1415
Kpn2I TCCGGA 1 cut(s) 1115
Kzo9I GATC 4 cut(s) 340, 635, 854, 1345
LguI GCTCTTC 1 cut(s) 1668
Lsp1109I GCAGC 2 cut(s) 111, 571
LweI GCATC 3 cut(s) 788, 1032, 1121
MabI ACCWGGT 1 cut(s) 1242
MaeI CTAG 4 cut(s) 566, 764, 1232, 1647
MaeII ACGT 2 cut(s) 555, 1552
MaeIII GTNAC 3 cut(s) 952, 992, 1103
MalI GATC 4 cut(s) 342, 637, 856, 1347
MboI GATC 4 cut(s) 340, 635, 854, 1345
MfeI CAATTG 1 cut(s) 204
MflI RGATCY 2 cut(s) 635, 854
MluCI AATT 8 cut(s) 34, 42, 55, 204, 216, 306, 531, 1404
MlyI GAGTC 1 cut(s) 1568
MnlI CCTC 6 cut(s) 173, 180, 437, 701, 844, 1120
MroI TCCGGA 1 cut(s) 1115
MroXI GAANNNNTTC 1 cut(s) 534
MseI TTAA 7 cut(s) 41, 468, 492, 542, 602, 1170, 1617
MslI CAYNNNNRTG 2 cut(s) 117, 1524
MspCI CTTAAG 1 cut(s) 1169
MspI CCGG 6 cut(s) 27, 344, 500, 1116, 1300, 1579
MspR9I CCNGG 5 cut(s) 28, 433, 473, 1244, 1300
MunI CAATTG 1 cut(s) 204
MvaI CCWGG 3 cut(s) 433, 473, 1244
MwoI GCNNNNNNNGC 1 cut(s) 1029
NciI CCSGG 2 cut(s) 28, 1300
NdeI CATATG 1 cut(s) 1250
NdeII GATC 4 cut(s) 340, 635, 854, 1345
NlaIII CATG 4 cut(s) 292, 1030, 1241, 1523
NlaIV GGNNCC 1 cut(s) 1218
NmuCI GTSAC 2 cut(s) 992, 1103
NspV TTCGAA 1 cut(s) 715
PciSI GCTCTTC 1 cut(s) 1668
PdmI GAANNNNTTC 1 cut(s) 534
PfeI GAWTC 3 cut(s) 244, 1002, 1165
PflFI GACNNNGTC 1 cut(s) 1244
PfoI TCCNGGA 1 cut(s) 26
PkrI GCNGC 2 cut(s) 126, 586
PleI GAGTC 1 cut(s) 1567
PpsI GAGTC 1 cut(s) 1567
Ppu21I YACGTR 1 cut(s) 1553
PshBI ATTAAT 1 cut(s) 41
Psp6I CCWGG 3 cut(s) 431, 471, 1242
PspGI CCWGG 3 cut(s) 431, 471, 1242
PspN4I GGNNCC 1 cut(s) 1218
PspPI GGNCC 2 cut(s) 61, 191
PstI CTGCAG 1 cut(s) 1103
PstNI CAGNNNCTG 1 cut(s) 616
PsuI RGATCY 2 cut(s) 635, 854
PsyI GACNNNGTC 1 cut(s) 1244
RsaI GTAC 2 cut(s) 981, 1715
RsaNI GTAC 2 cut(s) 980, 1714
RseI CAYNNNNRTG 2 cut(s) 117, 1524
SalI GTCGAC 1 cut(s) 1313
SapI GCTCTTC 1 cut(s) 1668
SaqAI TTAA 7 cut(s) 41, 468, 492, 542, 602, 1170, 1617
SatI GCNGC 2 cut(s) 125, 585
Sau3AI GATC 4 cut(s) 340, 635, 854, 1345
Sau96I GGNCC 2 cut(s) 61, 191
SchI GAGTC 1 cut(s) 1568
ScrFI CCNGG 5 cut(s) 28, 433, 473, 1244, 1300
SexAI ACCWGGT 1 cut(s) 1242
SfaNI GCATC 3 cut(s) 788, 1032, 1121
SfcI CTRYAG 1 cut(s) 1099
SfuI TTCGAA 1 cut(s) 715
SinI GGWCC 1 cut(s) 191
SmiMI CAYNNNNRTG 2 cut(s) 117, 1524
SmlI CTYRAG 4 cut(s) 997, 1169, 1352, 1702
SmoI CTYRAG 4 cut(s) 997, 1169, 1352, 1702
Sse9I AATT 8 cut(s) 34, 42, 55, 204, 216, 306, 531, 1404
SsiI CCGC 2 cut(s) 194, 1273
SspMI CTAG 4 cut(s) 566, 764, 1232, 1647
StyD4I CCNGG 5 cut(s) 26, 431, 471, 1242, 1298
StyI CCWWGG 1 cut(s) 658
TaaI ACNGT 6 cut(s) 177, 225, 238, 356, 687, 1182
TaiI ACGT 2 cut(s) 558, 1555
TaqI TCGA 5 cut(s) 397, 415, 715, 796, 1314
TaqII GACCGA 1 cut(s) 1048
TasI AATT 8 cut(s) 34, 42, 55, 204, 216, 306, 531, 1404
TatI WGTACW 2 cut(s) 979, 1713
TfiI GAWTC 3 cut(s) 244, 1002, 1165
Tru1I TTAA 7 cut(s) 41, 468, 492, 542, 602, 1170, 1617
Tru9I TTAA 7 cut(s) 41, 468, 492, 542, 602, 1170, 1617
TscAI CASTG 1 cut(s) 228
TseFI GTSAC 2 cut(s) 992, 1103
TseI GCWGC 2 cut(s) 124, 584
Tsp45I GTSAC 2 cut(s) 992, 1103
TspRI CASTG 1 cut(s) 228
Tth111I GACNNNGTC 1 cut(s) 1244
Vha464I CTTAAG 1 cut(s) 1169
VpaK11BI GGWCC 1 cut(s) 191
VspI ATTAAT 1 cut(s) 41
XagI CCTNNNNNAGG 1 cut(s) 695
XapI RAATTY 3 cut(s) 34, 55, 1404
XbaI TCTAGA 1 cut(s) 565
XmiI GTMKAC 1 cut(s) 1314
XmnI GAANNNNTTC 1 cut(s) 534
XspI CTAG 4 cut(s) 566, 764, 1232, 1647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.