Rh1AG112700

Type I inositol 1,4,5-trisphosphate 5-phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003538
Physical Location & Seq
Forward (+)
19474987 .. 19478684
3698 bp
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UTR
Exon/CDS
Intron
Rh1AG112700.1

Sequence Viewer

Length: 645 bp
ATGACTGTTAGGGATCAAGACCTGAAAAAGAAGTCTTTTATTCACAAGATTTTCACCATGAAAGACAGAGATGTAATTGGCTCATCTGATTTTCTTGAAGCACAATCTGATCCAGTGCTTGACAGTCAATCTATAAGTGGCAGAGGGGCTCAAATGCCTGTGGGTCGAGATGTTCAGTCCTTTCGCCAGGTCATATGGTTAGGGGACTTGAACTACCGCATTGCGTTGAGCTACTCTGAAACCCGGAAACTTTTGGTCGACAATGACTGGGATACACTTCTTGACAAAGATCAGCTCAAGATTGAAAGAGAAGCAGGGAGAGTATTCAAAGGATGGAAGGAAGGAAAAATTTACTTTGCACCTACGTACAAATACTTCTACAACTCCGACACTTATTTTGGCGAGATGAAAACATCAAAGAAGAAAAGGAGAACCCCAGCTTGGTGTGATAGAATACTGTGGCATGGAAATGGGATTAGACAACTGTCATACATACGTGGAGAGTCCCGTTTTTCTGACCACCGGCCAGTTTGTGCTACATTTTTTGTGGATGTCATGGTTAATGAGGATGGATTGAAGAAGGAAATACCCAGCTCTAATATGAAAGTTGAAATTGAAGAGCTTTTACCAACACGTAACAGATAG

Protein Analysis

214

Amino Acids

25.07

Weight (kDa)

9.21

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos2 PF22669 53 - 179 8.8e-39 Endonuclease/Exonuclease/phosphatase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 258
AciI CCGC 1 cut(s) 217
AclWI GGATC 2 cut(s) 21, 104
AcoI YGGCCR 1 cut(s) 524
AcsI RAATTY 1 cut(s) 348
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 1 cut(s) 441
AflIII ACRYGT 1 cut(s) 632
AgsI TTSAA 7 cut(s) 98, 211, 305, 328, 577, 611, 617
AjnI CCWGG 1 cut(s) 186
AjuI GAANNNNNNNTTGG 2 cut(s) 424, 456
AluBI AGCT 5 cut(s) 231, 295, 440, 594, 622
AluI AGCT 5 cut(s) 231, 295, 440, 594, 622
AlwI GGATC 2 cut(s) 21, 104
AoxI GGCC 1 cut(s) 524
ApoI RAATTY 1 cut(s) 348
ArsI GACNNNNNNTTYG 2 cut(s) 380, 412
AsuC2I CCSGG 1 cut(s) 244
AsuHPI GGTGA 1 cut(s) 46
BanII GRGCYC 1 cut(s) 151
BarI GAAGNNNNNNTAC 4 cut(s) 359, 391, 609, 641
BccI CCATC 2 cut(s) 327, 563
BciT130I CCWGG 1 cut(s) 188
BciVI GTATCC 1 cut(s) 265
BcnI CCSGG 1 cut(s) 244
BfuI GTATCC 1 cut(s) 265
Bme1390I CCNGG 2 cut(s) 188, 244
BmrFI CCNGG 2 cut(s) 188, 244
BmrI ACTGGG 1 cut(s) 277
BmuI ACTGGG 1 cut(s) 277
BoxI GACNNNNGTC 1 cut(s) 484
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 244
BsaAI YACGTR 3 cut(s) 366, 497, 635
Bsc4I CCNNNNNNNGG 1 cut(s) 441
Bse118I RCCGGY 1 cut(s) 522
Bse1I ACTGG 3 cut(s) 113, 272, 527
Bse3DI GCAATG 1 cut(s) 219
BseBI CCWGG 1 cut(s) 188
BseGI GGATG 3 cut(s) 338, 556, 574
BseLI CCNNNNNNNGG 1 cut(s) 441
BseMI GCAATG 1 cut(s) 219
BseNI ACTGG 3 cut(s) 113, 272, 527
BseYI CCCAGC 2 cut(s) 436, 590
BshFI GGCC 1 cut(s) 526
BsiSI CCGG 2 cut(s) 244, 523
BslFI GGGAC 2 cut(s) 218, 490
BslI CCNNNNNNNGG 1 cut(s) 441
BsmFI GGGAC 2 cut(s) 218, 490
BsnI GGCC 1 cut(s) 526
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 3 cut(s) 13, 109, 289
BspACI CCGC 1 cut(s) 217
BspANI GGCC 1 cut(s) 526
BspPI GGATC 2 cut(s) 21, 104
BspQI GCTCTTC 1 cut(s) 612
BsrDI GCAATG 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 522
BsrI ACTGG 3 cut(s) 113, 272, 527
BssAI RCCGGY 1 cut(s) 522
BssMI GATC 3 cut(s) 13, 109, 289
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 4 cut(s) 7, 125, 459, 486
Bst6I CTCTTC 1 cut(s) 612
BstBAI YACGTR 3 cut(s) 366, 497, 635
BstF5I GGATG 3 cut(s) 338, 556, 574
BstKTI GATC 3 cut(s) 16, 112, 292
BstMBI GATC 3 cut(s) 13, 109, 289
BstNI CCWGG 1 cut(s) 188
BstPAI GACNNNNGTC 1 cut(s) 484
BstSCI CCNGG 2 cut(s) 186, 242
BstSNI TACGTA 1 cut(s) 366
BsuI GTATCC 1 cut(s) 265
BsuRI GGCC 1 cut(s) 526
BtsCI GGATG 3 cut(s) 338, 556, 574
BtsIMutI CAGTG 1 cut(s) 120
Cfr10I RCCGGY 1 cut(s) 522
Csp6I GTAC 1 cut(s) 367
CviAII CATG 3 cut(s) 58, 464, 556
CviJI RGCY 8 cut(s) 81, 149, 231, 295, 440, 526, 594, 622
CviKI_1 RGCY 8 cut(s) 81, 149, 231, 295, 440, 526, 594, 622
CviQI GTAC 1 cut(s) 367
DpnI GATC 3 cut(s) 15, 111, 291
DpnII GATC 3 cut(s) 13, 109, 289
EaeI YGGCCR 1 cut(s) 524
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
Eco105I TACGTA 1 cut(s) 366
Eco24I GRGCYC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 186
EcoT38I GRGCYC 1 cut(s) 151
FaeI CATG 3 cut(s) 61, 467, 559
FaiI YATR 9 cut(s) 59, 134, 194, 196, 465, 490, 494, 557, 602
FaqI GGGAC 2 cut(s) 218, 490
FatI CATG 3 cut(s) 57, 463, 555
FauNDI CATATG 1 cut(s) 194
FblI GTMKAC 1 cut(s) 258
FokI GGATG 3 cut(s) 345, 563, 581
FriOI GRGCYC 1 cut(s) 151
GsaI CCCAGC 2 cut(s) 440, 594
HaeIII GGCC 1 cut(s) 526
HapII CCGG 2 cut(s) 244, 523
Hin1II CATG 3 cut(s) 61, 467, 559
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 1 cut(s) 503
HpaII CCGG 2 cut(s) 244, 523
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 5 cut(s) 88, 109, 238, 388, 517
Hpy188III TCNNGA 5 cut(s) 17, 95, 167, 281, 298
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 3 cut(s) 331, 335, 574
HpyCH4III ACNGT 4 cut(s) 7, 125, 459, 486
HpyCH4IV ACGT 3 cut(s) 365, 496, 634
HpyCH4V TGCA 1 cut(s) 359
HpySE526I ACGT 3 cut(s) 365, 496, 634
Hsp92II CATG 3 cut(s) 61, 467, 559
Kzo9I GATC 3 cut(s) 13, 109, 289
LguI GCTCTTC 1 cut(s) 612
MaeII ACGT 3 cut(s) 365, 496, 634
MaeIII GTNAC 1 cut(s) 635
MalI GATC 3 cut(s) 15, 111, 291
MboI GATC 3 cut(s) 13, 109, 289
MboII GAAGA 3 cut(s) 433, 589, 629
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 3 cut(s) 75, 348, 612
MlyI GAGTC 1 cut(s) 512
MmeI TCCRAC 1 cut(s) 411
MnlI CCTC 2 cut(s) 137, 559
MseI TTAA 1 cut(s) 561
MslI CAYNNNNRTG 1 cut(s) 468
MspI CCGG 2 cut(s) 244, 523
MspR9I CCNGG 2 cut(s) 188, 244
MvaI CCWGG 1 cut(s) 188
NciI CCSGG 1 cut(s) 244
NdeI CATATG 1 cut(s) 194
NdeII GATC 3 cut(s) 13, 109, 289
NlaIII CATG 3 cut(s) 61, 467, 559
PciSI GCTCTTC 1 cut(s) 612
PleI GAGTC 1 cut(s) 511
PpsI GAGTC 1 cut(s) 511
Ppu21I YACGTR 3 cut(s) 366, 497, 635
PshAI GACNNNNGTC 1 cut(s) 484
Psp6I CCWGG 1 cut(s) 186
PspFI CCCAGC 2 cut(s) 436, 590
PspGI CCWGG 1 cut(s) 186
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
RseI CAYNNNNRTG 1 cut(s) 468
SalI GTCGAC 1 cut(s) 257
SapI GCTCTTC 1 cut(s) 612
SaqAI TTAA 1 cut(s) 561
Sau3AI GATC 3 cut(s) 13, 109, 289
SchI GAGTC 1 cut(s) 512
ScrFI CCNGG 2 cut(s) 188, 244
SduI GDGCHC 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 468
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
SnaBI TACGTA 1 cut(s) 366
Sse9I AATT 3 cut(s) 75, 348, 612
SsiI CCGC 1 cut(s) 217
StyD4I CCNGG 2 cut(s) 186, 242
TaaI ACNGT 4 cut(s) 7, 125, 459, 486
TaiI ACGT 3 cut(s) 368, 499, 637
TaqI TCGA 2 cut(s) 166, 258
TasI AATT 3 cut(s) 75, 348, 612
Tru1I TTAA 1 cut(s) 561
Tru9I TTAA 1 cut(s) 561
TscAI CASTG 1 cut(s) 120
TspDTI ATGAA 3 cut(s) 74, 422, 617
TspRI CASTG 1 cut(s) 120
XapI RAATTY 1 cut(s) 348
XmiI GTMKAC 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.