Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002899.1

Orthogroup ID

OG0003538

Physical Location & Seq

Genomic Coordinates Forward (+)

66581 .. 70504

Gene Structure 3924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002899.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

atgaaagacagagatgtaattggctcatctgattttcttgaagcacaatctgatccagtgcttgacagtcaatctataagtggcagaggggctcaaatgcctgtgggtcgagatgttcagtcctttcgagtttttgtagcaacctggaatgtaggagggaaatctccccatagtggccttaatctggacgattttcttcaggttaataatccgtcagacatatatgtcttgggttttcaggaaattgttcctttaaatgctggaaatgtattagttctagaggataatgaacctgcggcaaaatggcttgctttaatcaatcagtcactgaataaatcaacaaatggatcttcaagactcacagcgagccttggtggttcattgtttttctcgaagccgtcccttaaaaaggtcagcaagtcttttagaacagagagcaaaagaaagctgaagagttgcaactgcacttatgaactagaaaggaagcatagtaaagatttctgttttcgatgccaacaaccaaatataaatgaagatgacttgtcttctgaaccggatgaagagggatctaatggctttgatatctcagaaacttccgtttcctctactacgagccagatgaagtatagccttgtagcaagtaagcaaatggtaggaatttttgttactctttgggcaaggaaggagtgtgtacaatatgttagtcacttgagaatctcctgcattagtcgtggcatcatgggctgccttggaaacaagggttgtatttcagtgagctttctgttccatcagacaaccttttgtttcgtctgcagtcacttggcatctggtgagaaagagggggatgagcttaggagaaatatggatgtcttagagattcttaagaatacacagtttcctaagatttgcagaacagcttatagtagggttccagataaaattctagaccatgaccaggtcatatggttaggggacttgaactaccgcattgcgttgagctactctgaaacccagaaacttttagtcgacaatgactgggatactcttcttgacaaagatcagctcaagattgaaagagaagcagggagagtattcaaaggatggaaggaaggaaaaatttactttgcacctacttacaaatacttctacaactccgacacttattttggcgagatgaaaacatcaaagaagaaaaggagaaccccagcttggtgtgatagaatactgtggcatggaaatgggattagacaactgtcatacatacgtggagagtcccgtttttctgaccaccggccagtttgtgctacattttttgtggatgtcatggttaatgaggatggattgaagaaggaaatacccagctctaatatgaaagttgaaattgaagagcttttacccacacgtactaaacttgctaagcacggccatggaaaggttgaaacaatccccagttttgctgatgatatgagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052866 GO:0071704 GO:0106019

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

490

Amino Acids

55.51

Weight (kDa)

8.29

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04980 AT5G04980 AT5G04980 AT5G04980
fragaria_vesca	FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890
malus_domestica	MD02G1266600.v1.1 MD03G1038300.v1.1 MD03G1038700.v1.1 MD07G1053100.v1.1
prunus_persica	Prupe.2G058000_v2.0.a1
pyrus_communis	pycom02g22810 pycom07g04110 pycom16g16630
rosa_chinensis	RchiOBHm_Chr1g0330941
rosa_laevigata	RLG00000029765
rosa_multiflora	Rmu_sc0002899.1_g000009
rosa_roxburghii	Rroxscaffold_4G00319600
rosa_rugosa	Rorug01G0091100 Rorug01G0091200 Rorug01G0091300 Rorug01G0091400
rosa_samantha	Rh1AG112700 Rh1BG086700 Rh1DG118200
rosa_wichuraiana	Rw1G009180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
Acc36I	ACCTGC	1 cut(s)	301
AccI	GTMKAC	1 cut(s)	1026
AciI	CCGC	2 cut(s)	296, 985
AclWI	GGATC	3 cut(s)	47, 355, 574
AcoI	YGGCCR	2 cut(s)	1292, 1423
AcsI	RAATTY	3 cut(s)	657, 939, 1116
AcuI	CTGAAG	2 cut(s)	182, 470
AfaI	GTAC	2 cut(s)	693, 1405
AfiI	CCNNNNNNNGG	6 cut(s)	173, 184, 409, 955, 1209, 1432
AflII	CTTAAG	1 cut(s)	881
AflIII	ACRYGT	1 cut(s)	1400
AgsI	TTSAA	9 cut(s)	41, 354, 979, 1073, 1096, 1345, 1379, 1385, 1439
AjnI	CCWGG	2 cut(s)	143, 954
AjuI	GAANNNNNNNTTGG	2 cut(s)	1192, 1224
AluBI	AGCT	9 cut(s)	448, 777, 850, 917, 999, 1063, 1208, 1362, 1390
AluI	AGCT	9 cut(s)	448, 777, 850, 917, 999, 1063, 1208, 1362, 1390
AlwI	GGATC	3 cut(s)	47, 355, 574
AlwNI	CAGNNNCTG	1 cut(s)	328
AoxI	GGCC	3 cut(s)	175, 1292, 1423
ApeKI	GCWGC	1 cut(s)	744
ApoI	RAATTY	3 cut(s)	657, 939, 1116
ArsI	GACNNNNNNTTYG	2 cut(s)	1148, 1180
Asp700I	GAANNNNTTC	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	842
BanII	GRGCYC	1 cut(s)	94
BarI	GAAGNNNNNNTAC	2 cut(s)	1377, 1409
BbsI	GAAGAC	1 cut(s)	537
BbvI	GCAGC	1 cut(s)	731
BccI	CCATC	3 cut(s)	795, 1095, 1331
BceAI	ACGGC	2 cut(s)	382, 1438
BciT130I	CCWGG	2 cut(s)	145, 956
BciVI	GTATCC	1 cut(s)	1033
BfaI	CTAG	3 cut(s)	278, 476, 944
BfmI	CTRYAG	1 cut(s)	811
BfrI	CTTAAG	1 cut(s)	881
BfuAI	ACCTGC	1 cut(s)	301
BfuI	GTATCC	1 cut(s)	1033
BisI	GCNGC	2 cut(s)	297, 745
BlpI	GCTNAGC	1 cut(s)	1416
BlsI	GCNGC	2 cut(s)	298, 746
Bme1390I	CCNGG	2 cut(s)	145, 956
BmiI	GGNNCC	1 cut(s)	930
BmrFI	CCNGG	2 cut(s)	145, 956
BmrI	ACTGGG	2 cut(s)	1045, 1443
BmsI	GCATC	3 cut(s)	500, 744, 833
BmuI	ACTGGG	2 cut(s)	1045, 1443
BoxI	GACNNNNGTC	1 cut(s)	1252
BpiI	GAAGAC	1 cut(s)	537
Bpu10I	CCTNAGC	1 cut(s)	851
Bpu1102I	GCTNAGC	1 cut(s)	1416
BpuEI	CTTGAG	2 cut(s)	730, 1049
BsaAI	YACGTR	2 cut(s)	1265, 1403
BsaJI	CCNNGG	3 cut(s)	370, 748, 1426
BsaWI	WCCGGW	1 cut(s)	553
Bsc4I	CCNNNNNNNGG	6 cut(s)	173, 184, 409, 955, 1209, 1432
Bse118I	RCCGGY	1 cut(s)	1290
Bse1I	ACTGG	4 cut(s)	56, 1040, 1295, 1449
Bse3DI	GCAATG	1 cut(s)	987
BseBI	CCWGG	2 cut(s)	145, 956
BseDI	CCNNGG	3 cut(s)	370, 748, 1426
BseGI	GGATG	6 cut(s)	562, 850, 871, 1106, 1324, 1342
BseLI	CCNNNNNNNGG	6 cut(s)	173, 184, 409, 955, 1209, 1432
BseMI	GCAATG	1 cut(s)	987
BseMII	CTCAG	1 cut(s)	600
BseNI	ACTGG	4 cut(s)	56, 1040, 1295, 1449
BseXI	GCAGC	1 cut(s)	731
BseYI	CCCAGC	2 cut(s)	1204, 1358
BsgI	GTGCAG	1 cut(s)	448
BshFI	GGCC	3 cut(s)	177, 1294, 1425
BsiSI	CCGG	2 cut(s)	554, 1291
BslFI	GGGAC	3 cut(s)	385, 986, 1258
BslI	CCNNNNNNNGG	6 cut(s)	173, 184, 409, 955, 1209, 1432
BsmFI	GGGAC	3 cut(s)	385, 986, 1258
BsnI	GGCC	3 cut(s)	177, 1294, 1425
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp1407I	TGTACA	1 cut(s)	691
Bsp143I	GATC	4 cut(s)	52, 347, 566, 1057
Bsp1720I	GCTNAGC	1 cut(s)	1416
Bsp19I	CCATGG	1 cut(s)	1426
BspACI	CCGC	2 cut(s)	296, 985
BspANI	GGCC	3 cut(s)	177, 1294, 1425
BspCNI	CTCAG	1 cut(s)	599
BspLI	GGNNCC	1 cut(s)	930
BspMAI	CTGCAG	1 cut(s)	815
BspMI	ACCTGC	1 cut(s)	301
BspPI	GGATC	3 cut(s)	47, 355, 574
BspQI	GCTCTTC	1 cut(s)	1380
BspTI	CTTAAG	1 cut(s)	881
BsrDI	GCAATG	1 cut(s)	987
BsrFI	RCCGGY	1 cut(s)	1290
BsrGI	TGTACA	1 cut(s)	691
BsrI	ACTGG	4 cut(s)	56, 1040, 1295, 1449
BssAI	RCCGGY	1 cut(s)	1290
BssECI	CCNNGG	3 cut(s)	370, 748, 1426
BssMI	GATC	4 cut(s)	52, 347, 566, 1057
BssT1I	CCWWGG	3 cut(s)	370, 748, 1426
Bst2UI	CCWGG	2 cut(s)	145, 956
Bst4CI	ACNGT	4 cut(s)	68, 894, 1227, 1254
Bst6I	CTCTTC	4 cut(s)	446, 555, 1050, 1380
BstAFI	CTTAAG	1 cut(s)	881
BstAUI	TGTACA	1 cut(s)	691
BstBAI	YACGTR	2 cut(s)	1265, 1403
BstC8I	GCNNGC	2 cut(s)	309, 367
BstDEI	CTNAG	5 cut(s)	586, 851, 871, 900, 1416
BstDSI	CCRYGG	1 cut(s)	1426
BstENI	CCTNNNNNAGG	1 cut(s)	407
BstF5I	GGATG	6 cut(s)	562, 850, 871, 1106, 1324, 1342
BstKTI	GATC	4 cut(s)	55, 350, 569, 1060
BstMBI	GATC	4 cut(s)	52, 347, 566, 1057
BstMWI	GCNNNNNNNGC	1 cut(s)	741
BstNI	CCWGG	2 cut(s)	145, 956
BstPAI	GACNNNNGTC	1 cut(s)	1252
BstSCI	CCNGG	2 cut(s)	143, 954
BstSFI	CTRYAG	1 cut(s)	811
BstV1I	GCAGC	1 cut(s)	731
BstV2I	GAAGAC	1 cut(s)	537
BstX2I	RGATCY	2 cut(s)	347, 566
BstYI	RGATCY	2 cut(s)	347, 566
BsuI	GTATCC	1 cut(s)	1033
BsuRI	GGCC	3 cut(s)	177, 1294, 1425
BtgI	CCRYGG	1 cut(s)	1426
BtsCI	GGATG	6 cut(s)	562, 850, 871, 1106, 1324, 1342
BtsIMutI	CAGTG	3 cut(s)	63, 326, 777
BveI	ACCTGC	1 cut(s)	301
Cac8I	GCNNGC	2 cut(s)	309, 367
CaiI	CAGNNNCTG	1 cut(s)	328
Cfr10I	RCCGGY	1 cut(s)	1290
CsiI	ACCWGGT	1 cut(s)	954
Csp6I	GTAC	2 cut(s)	692, 1404
CviAII	CATG	5 cut(s)	739, 950, 1232, 1324, 1427
CviQI	GTAC	2 cut(s)	692, 1404
DdeI	CTNAG	5 cut(s)	586, 851, 871, 900, 1416
DpnI	GATC	4 cut(s)	54, 349, 568, 1059
DpnII	GATC	4 cut(s)	52, 347, 566, 1057
DraI	TTTAAA	1 cut(s)	255
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
EaeI	YGGCCR	2 cut(s)	1292, 1423
Eam1104I	CTCTTC	4 cut(s)	446, 555, 1050, 1380
EarI	CTCTTC	4 cut(s)	446, 555, 1050, 1380
Eco130I	CCWWGG	3 cut(s)	370, 748, 1426
Eco24I	GRGCYC	1 cut(s)	94
Eco32I	GATATC	1 cut(s)	583
Eco57I	CTGAAG	2 cut(s)	182, 470
EcoNI	CCTNNNNNAGG	1 cut(s)	407
EcoRII	CCWGG	2 cut(s)	143, 954
EcoRV	GATATC	1 cut(s)	583
EcoT14I	CCWWGG	3 cut(s)	370, 748, 1426
EcoT38I	GRGCYC	1 cut(s)	94
ErhI	CCWWGG	3 cut(s)	370, 748, 1426
FaeI	CATG	5 cut(s)	742, 953, 1235, 1327, 1430
FaqI	GGGAC	3 cut(s)	385, 986, 1258
FatI	CATG	5 cut(s)	738, 949, 1231, 1323, 1426
FauNDI	CATATG	1 cut(s)	962
FblI	GTMKAC	1 cut(s)	1026
Fnu4HI	GCNGC	2 cut(s)	297, 745
FokI	GGATG	6 cut(s)	569, 857, 878, 1113, 1331, 1349
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	2 cut(s)	297, 745
FspBI	CTAG	3 cut(s)	278, 476, 944
GluI	GCNGC	2 cut(s)	297, 745
GsaI	CCCAGC	2 cut(s)	1208, 1362
HaeIII	GGCC	3 cut(s)	177, 1294, 1425
HapII	CCGG	2 cut(s)	554, 1291
Hin1II	CATG	5 cut(s)	742, 953, 1235, 1327, 1430
HincII	GTYRAC	1 cut(s)	1027
HindII	GTYRAC	1 cut(s)	1027
HinfI	GANTC	4 cut(s)	357, 714, 877, 1271
HpaII	CCGG	2 cut(s)	554, 1291
HphI	GGTGA	1 cut(s)	842
Hpy166II	GTNNAC	2 cut(s)	692, 1027
Hpy188I	TCNGA	9 cut(s)	31, 52, 217, 550, 589, 792, 1006, 1156, 1285
Hpy8I	GTNNAC	2 cut(s)	692, 1027
HpyAV	CCTTC	4 cut(s)	676, 1099, 1103, 1342
HpyCH4III	ACNGT	4 cut(s)	68, 894, 1227, 1254
HpyCH4IV	ACGT	2 cut(s)	1264, 1402
HpyCH4V	TGCA	6 cut(s)	459, 465, 723, 813, 909, 1127
HpyF10VI	GCNNNNNNNGC	1 cut(s)	741
HpyF3I	CTNAG	5 cut(s)	586, 851, 871, 900, 1416
HpySE526I	ACGT	2 cut(s)	1264, 1402
Hsp92II	CATG	5 cut(s)	742, 953, 1235, 1327, 1430
Kzo9I	GATC	4 cut(s)	52, 347, 566, 1057
LguI	GCTCTTC	1 cut(s)	1380
Lsp1109I	GCAGC	1 cut(s)	731
LweI	GCATC	3 cut(s)	500, 744, 833
MabI	ACCWGGT	1 cut(s)	954
MaeI	CTAG	3 cut(s)	278, 476, 944
MaeII	ACGT	2 cut(s)	1264, 1402
MaeIII	GTNAC	4 cut(s)	324, 664, 704, 815
MalI	GATC	4 cut(s)	54, 349, 568, 1059
MboI	GATC	4 cut(s)	52, 347, 566, 1057
MflI	RGATCY	2 cut(s)	347, 566
MhlI	GDGCHC	1 cut(s)	94
MluCI	AATT	6 cut(s)	18, 243, 657, 939, 1116, 1380
MlyI	GAGTC	2 cut(s)	351, 1280
MmeI	TCCRAC	1 cut(s)	1179
MnlI	CCTC	7 cut(s)	80, 149, 274, 556, 613, 832, 1327
MroXI	GAANNNNTTC	1 cut(s)	246
MseI	TTAA	7 cut(s)	180, 204, 254, 314, 405, 882, 1329
MslI	CAYNNNNRTG	2 cut(s)	1236, 1425
MspCI	CTTAAG	1 cut(s)	881
MspI	CCGG	2 cut(s)	554, 1291
MspR9I	CCNGG	2 cut(s)	145, 956
MvaI	CCWGG	2 cut(s)	145, 956
MwoI	GCNNNNNNNGC	1 cut(s)	741
NcoI	CCATGG	1 cut(s)	1426
NdeI	CATATG	1 cut(s)	962
NdeII	GATC	4 cut(s)	52, 347, 566, 1057
NlaIII	CATG	5 cut(s)	742, 953, 1235, 1327, 1430
NlaIV	GGNNCC	1 cut(s)	930
NmuCI	GTSAC	3 cut(s)	324, 704, 815
PciSI	GCTCTTC	1 cut(s)	1380
PdmI	GAANNNNTTC	1 cut(s)	246
PfeI	GAWTC	2 cut(s)	714, 877
PflFI	GACNNNGTC	1 cut(s)	956
PkrI	GCNGC	2 cut(s)	298, 746
PleI	GAGTC	2 cut(s)	351, 1279
PpsI	GAGTC	2 cut(s)	351, 1279
Ppu21I	YACGTR	2 cut(s)	1265, 1403
PshAI	GACNNNNGTC	1 cut(s)	1252
Psp6I	CCWGG	2 cut(s)	143, 954
PspFI	CCCAGC	2 cut(s)	1204, 1358
PspGI	CCWGG	2 cut(s)	143, 954
PspN4I	GGNNCC	1 cut(s)	930
PstI	CTGCAG	1 cut(s)	815
PstNI	CAGNNNCTG	1 cut(s)	328
PsuI	RGATCY	2 cut(s)	347, 566
PsyI	GACNNNGTC	1 cut(s)	956
RsaI	GTAC	2 cut(s)	693, 1405
RsaNI	GTAC	2 cut(s)	692, 1404
RseI	CAYNNNNRTG	2 cut(s)	1236, 1425
SalI	GTCGAC	1 cut(s)	1025
SapI	GCTCTTC	1 cut(s)	1380
SaqAI	TTAA	7 cut(s)	180, 204, 254, 314, 405, 882, 1329
SatI	GCNGC	2 cut(s)	297, 745
Sau3AI	GATC	4 cut(s)	52, 347, 566, 1057
SchI	GAGTC	2 cut(s)	351, 1280
ScrFI	CCNGG	2 cut(s)	145, 956
SduI	GDGCHC	1 cut(s)	94
SexAI	ACCWGGT	1 cut(s)	954
SfaNI	GCATC	3 cut(s)	500, 744, 833
SfcI	CTRYAG	1 cut(s)	811
SmiMI	CAYNNNNRTG	2 cut(s)	1236, 1425
SmlI	CTYRAG	3 cut(s)	709, 881, 1064
SmoI	CTYRAG	3 cut(s)	709, 881, 1064
Sse9I	AATT	6 cut(s)	18, 243, 657, 939, 1116, 1380
SsiI	CCGC	2 cut(s)	296, 985
SspMI	CTAG	3 cut(s)	278, 476, 944
StyD4I	CCNGG	2 cut(s)	143, 954
StyI	CCWWGG	3 cut(s)	370, 748, 1426
TaaI	ACNGT	4 cut(s)	68, 894, 1227, 1254
TaiI	ACGT	2 cut(s)	1267, 1405
TaqI	TCGA	5 cut(s)	109, 127, 392, 508, 1026
TasI	AATT	6 cut(s)	18, 243, 657, 939, 1116, 1380
TatI	WGTACW	1 cut(s)	691
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	2 cut(s)	714, 877
Tru1I	TTAA	7 cut(s)	180, 204, 254, 314, 405, 882, 1329
Tru9I	TTAA	7 cut(s)	180, 204, 254, 314, 405, 882, 1329
TscAI	CASTG	3 cut(s)	63, 333, 777
TseFI	GTSAC	3 cut(s)	324, 704, 815
TseI	GCWGC	1 cut(s)	744
Tsp45I	GTSAC	3 cut(s)	324, 704, 815
TspDTI	ATGAA	9 cut(s)	17, 303, 369, 486, 546, 573, 635, 1190, 1385
TspGWI	ACGGA	2 cut(s)	201, 586
TspRI	CASTG	3 cut(s)	63, 333, 777
Tth111I	GACNNNGTC	1 cut(s)	956
Vha464I	CTTAAG	1 cut(s)	881
XagI	CCTNNNNNAGG	1 cut(s)	407
XapI	RAATTY	3 cut(s)	657, 939, 1116
XbaI	TCTAGA	2 cut(s)	277, 943
XmiI	GTMKAC	1 cut(s)	1026
XmnI	GAANNNNTTC	1 cut(s)	246
XspI	CTAG	3 cut(s)	278, 476, 944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.