Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003538

Physical Location & Seq

Genomic Coordinates Forward (+)

14842462 .. 14843279

Gene Structure 818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0091300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAGGGAGAAGCCTGAAGACTATGTGGTTGCATGCTACCTCAAAGCCACCTACATGGACGTCTACTCACATACAGTGAAGCCAGTGAATGGGATGGACCTATGGATCCCTACTGAGGAAACTCCTATCCTCCCACCTCAGTACAATAGGCAGCCTGGCATCTTCCACCCAAGCCAGGAGCAGCTTAGAGCAAAAGGTACCAAACTGCCTCAAAAGACAAAGAATGAACTTAGAGCTAAAGCAGCAAAGAGAGCTGAAGATGCAAAGAAAAAGAGGGATCAAAAGAAGGCTGTAGCAAAGGCAGCAGGTACAGCTGCTCCTAGCAGGGGAAGGCCACCAAAAGTTGCTTCAAACAATGGCAAAGCAGCTTCTAGCAAGGGAAAAGCTCCTTCTGCACCACAAGCTTCCCAAGGTTCATCAAGGTCATCAGTGAGGATCAGGAATAATGCAAGGAGTGCTGGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052866 GO:0071704 GO:0106019

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

155

Amino Acids

16.87

Weight (kDa)

10.37

Isoelectric Point (pI)

58.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04980 AT5G04980 AT5G04980 AT5G04980
fragaria_vesca	FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890
malus_domestica	MD02G1266600.v1.1 MD03G1038300.v1.1 MD03G1038700.v1.1 MD07G1053100.v1.1
prunus_persica	Prupe.2G058000_v2.0.a1
pyrus_communis	pycom02g22810 pycom07g04110 pycom16g16630
rosa_chinensis	RchiOBHm_Chr1g0330941
rosa_laevigata	RLG00000029765
rosa_multiflora	Rmu_sc0002899.1_g000009
rosa_roxburghii	Rroxscaffold_4G00319600
rosa_rugosa	Rorug01G0091100 Rorug01G0091200 Rorug01G0091300 Rorug01G0091400
rosa_samantha	Rh1AG112700 Rh1BG086700 Rh1DG118200
rosa_wichuraiana	Rw1G009180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	63
Acc36I	ACCTGC	1 cut(s)	296
Acc65I	GGTACC	1 cut(s)	197
AccB1I	GGYRCC	1 cut(s)	197
AccB7I	CCANNNNNTGG	1 cut(s)	89
AccI	GTMKAC	1 cut(s)	63
AclWI	GGATC	4 cut(s)	100, 113, 285, 443
AcuI	CTGAAG	2 cut(s)	36, 276
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	3 cut(s)	143, 199, 310
AfiI	CCNNNNNNNGG	4 cut(s)	89, 115, 175, 326
AgsI	TTSAA	1 cut(s)	351
AjnI	CCWGG	2 cut(s)	154, 174
AjuI	GAANNNNNNNTTGG	2 cut(s)	331, 363
AluBI	AGCT	7 cut(s)	184, 236, 254, 314, 368, 386, 404
AluI	AGCT	7 cut(s)	184, 236, 254, 314, 368, 386, 404
AlwI	GGATC	4 cut(s)	100, 113, 285, 443
AoxI	GGCC	1 cut(s)	332
ApeKI	GCWGC	6 cut(s)	151, 181, 242, 302, 314, 365
Asp718I	GGTACC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	97
BamHI	GGATCC	1 cut(s)	105
BanI	GGYRCC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	6 cut(s)	163, 193, 254, 301, 314, 377
BccI	CCATC	1 cut(s)	88
BciT130I	CCWGG	2 cut(s)	156, 176
BfaI	CTAG	2 cut(s)	321, 372
BfmI	CTRYAG	1 cut(s)	291
BfuAI	ACCTGC	1 cut(s)	296
BisI	GCNGC	6 cut(s)	152, 182, 243, 303, 315, 366
BlsI	GCNGC	6 cut(s)	153, 183, 244, 304, 316, 367
Bme1390I	CCNGG	2 cut(s)	156, 176
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	2 cut(s)	107, 199
BmrFI	CCNGG	2 cut(s)	156, 176
BmsI	GCATC	2 cut(s)	168, 250
BpiI	GAAGAC	1 cut(s)	24
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	409
BsaXI	ACNNNNNCTCC	2 cut(s)	301, 331
Bsc4I	CCNNNNNNNGG	4 cut(s)	89, 115, 175, 326
Bse1I	ACTGG	1 cut(s)	83
BseBI	CCWGG	2 cut(s)	156, 176
BseDI	CCNNGG	1 cut(s)	409
BseGI	GGATG	1 cut(s)	99
BseLI	CCNNNNNNNGG	4 cut(s)	89, 115, 175, 326
BseMII	CTCAG	2 cut(s)	105, 152
BseNI	ACTGG	1 cut(s)	83
BseXI	GCAGC	6 cut(s)	163, 193, 254, 301, 314, 377
BsgI	GTGCAG	1 cut(s)	378
BshFI	GGCC	1 cut(s)	334
BshNI	GGYRCC	1 cut(s)	197
BslI	CCNNNNNNNGG	4 cut(s)	89, 115, 175, 326
BsnI	GGCC	1 cut(s)	334
Bsp143I	GATC	3 cut(s)	105, 277, 435
BspANI	GGCC	1 cut(s)	334
BspCNI	CTCAG	2 cut(s)	106, 151
BspLI	GGNNCC	2 cut(s)	107, 199
BspMI	ACCTGC	1 cut(s)	296
BspPI	GGATC	4 cut(s)	100, 113, 285, 443
BspT107I	GGYRCC	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	409
BssMI	GATC	3 cut(s)	105, 277, 435
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	2 cut(s)	156, 176
Bst4CI	ACNGT	1 cut(s)	76
BstACI	GRCGYC	1 cut(s)	60
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	4 cut(s)	114, 138, 185, 230
BstF5I	GGATG	1 cut(s)	99
BstKTI	GATC	3 cut(s)	108, 280, 438
BstMBI	GATC	3 cut(s)	105, 277, 435
BstMWI	GCNNNNNNNGC	8 cut(s)	242, 251, 260, 302, 311, 392, 401, 455
BstNI	CCWGG	2 cut(s)	156, 176
BstNSI	RCATGY	1 cut(s)	36
BstSCI	CCNGG	2 cut(s)	154, 174
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	6 cut(s)	163, 193, 254, 301, 314, 377
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	105
BstXI	CCANNNNNNTGG	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	334
BtsCI	GGATG	1 cut(s)	99
BtsIMutI	CAGTG	3 cut(s)	81, 90, 435
BveI	ACCTGC	1 cut(s)	296
Cac8I	GCNNGC	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	97
Csp6I	GTAC	3 cut(s)	142, 198, 309
CviAII	CATG	2 cut(s)	33, 55
CviQI	GTAC	3 cut(s)	142, 198, 309
DdeI	CTNAG	4 cut(s)	114, 138, 185, 230
DpnI	GATC	3 cut(s)	107, 279, 437
DpnII	GATC	3 cut(s)	105, 277, 435
Eco130I	CCWWGG	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	2 cut(s)	36, 276
EcoRII	CCWGG	2 cut(s)	154, 174
EcoT14I	CCWWGG	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	2 cut(s)	36, 58
FaiI	YATR	5 cut(s)	24, 34, 56, 72, 103
FatI	CATG	2 cut(s)	32, 54
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	6 cut(s)	152, 182, 243, 303, 315, 366
FokI	GGATG	1 cut(s)	106
Fsp4HI	GCNGC	6 cut(s)	152, 182, 243, 303, 315, 366
FspBI	CTAG	2 cut(s)	321, 372
GluI	GCNGC	6 cut(s)	152, 182, 243, 303, 315, 366
HaeIII	GGCC	1 cut(s)	334
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	2 cut(s)	36, 58
HindIII	AAGCTT	1 cut(s)	402
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	439
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	3 cut(s)	280, 324, 399
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	4 cut(s)	32, 263, 395, 449
HpyF10VI	GCNNNNNNNGC	8 cut(s)	242, 251, 260, 302, 311, 392, 401, 455
HpyF3I	CTNAG	4 cut(s)	114, 138, 185, 230
HpySE526I	ACGT	1 cut(s)	60
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	36, 58
KpnI	GGTACC	1 cut(s)	201
Kzo9I	GATC	3 cut(s)	105, 277, 435
LmnI	GCTCC	3 cut(s)	178, 322, 391
Lsp1109I	GCAGC	6 cut(s)	163, 193, 254, 301, 314, 377
LweI	GCATC	2 cut(s)	168, 250
MaeI	CTAG	2 cut(s)	321, 372
MaeII	ACGT	1 cut(s)	60
MalI	GATC	3 cut(s)	107, 279, 437
MboI	GATC	3 cut(s)	105, 277, 435
MboII	GAAGA	3 cut(s)	29, 154, 269
MflI	RGATCY	1 cut(s)	105
MluCI	AATT	1 cut(s)	463
MnlI	CCTC	7 cut(s)	50, 109, 140, 147, 219, 267, 426
MslI	CAYNNNNRTG	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	314
MspR9I	CCNGG	2 cut(s)	156, 176
MvaI	CCWGG	2 cut(s)	156, 176
MwoI	GCNNNNNNNGC	8 cut(s)	242, 251, 260, 302, 311, 392, 401, 455
NdeII	GATC	3 cut(s)	105, 277, 435
NlaIII	CATG	2 cut(s)	36, 58
NlaIV	GGNNCC	2 cut(s)	107, 199
NspI	RCATGY	1 cut(s)	36
PaeI	GCATGC	1 cut(s)	36
PflMI	CCANNNNNTGG	1 cut(s)	89
PkrI	GCNGC	6 cut(s)	153, 183, 244, 304, 316, 367
Psp6I	CCWGG	2 cut(s)	154, 174
PspGI	CCWGG	2 cut(s)	154, 174
PspN4I	GGNNCC	2 cut(s)	107, 199
PspPI	GGNCC	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	105
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	3 cut(s)	143, 199, 310
RsaNI	GTAC	3 cut(s)	142, 198, 309
RseI	CAYNNNNRTG	1 cut(s)	53
SatI	GCNGC	6 cut(s)	152, 182, 243, 303, 315, 366
Sau3AI	GATC	3 cut(s)	105, 277, 435
Sau96I	GGNCC	1 cut(s)	97
ScrFI	CCNGG	2 cut(s)	156, 176
SfaNI	GCATC	2 cut(s)	168, 250
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	53
SphI	GCATGC	1 cut(s)	36
Sse9I	AATT	1 cut(s)	463
SspMI	CTAG	2 cut(s)	321, 372
StyD4I	CCNGG	2 cut(s)	154, 174
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	1 cut(s)	76
TaiI	ACGT	1 cut(s)	63
TasI	AATT	1 cut(s)	463
TatI	WGTACW	1 cut(s)	141
TscAI	CASTG	3 cut(s)	81, 90, 435
TseI	GCWGC	6 cut(s)	151, 181, 242, 302, 314, 365
TspDTI	ATGAA	2 cut(s)	240, 405
TspRI	CASTG	3 cut(s)	81, 90, 435
Van91I	CCANNNNNTGG	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	97
XceI	RCATGY	1 cut(s)	36
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	2 cut(s)	321, 372
ZraI	GACGTC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.