Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003538

Physical Location & Seq

Genomic Coordinates Reverse (-)

12493036 .. 12494238

Gene Structure 1203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g16630.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTCCTACGGCGGATCTGCATCCAATGATGGATACAGAATGCCGGGGCATTCGAGGTATAACTTAGTTGCAAGCAAGCAAATGGTTGGCATATTTCTCACAGTATGGGTAAGGAGTGAACTGAGGGATTCTGTGAAAGACATGAAAGTATCATGTGTTGGAAGAGGATTAATGGGTTATCTTGGAAATAAGGGATCCATTTCAGTGAGCATGTCTTTGCACGATACGACCTTTTGCTTTGTTTGTACTCATTTAACCTCTGGACAAAAGGAGGGTGATGAACTAAGAAGGAATTCTGATGTCATGGAGATCCTTCGGAAGACTAGATTTCCAAAAGTTAAGGGCTCTGGCGCGCTGAAATCCCCAGAAACAATCTTGGAGCATGATCGAGTTATTTGGCTTGGGGATTTAAATTATCGAATTTCCCTCTCTTACCGCTCTGCTAAAGCGTTAGTTGAGATGCAAAACTGGAGGGCCTTGTTAGAGAATGACCAGTTACGGATAGAGCAGAAACGAGGTCGTGTTTTTGGGGGCTGGAATGAGGGGAAGATTTATTTTCCACCAACTTACAAGTATTCAACAAATTCAGACAGATATGCAGGGGATGATATGCACCCAAAGGAGAAACGTCGAACACCTGCTTGGTGTGATCGAATATTGTGGTATGGTGAAGGTCTCCAGCAATTATCGTATGTCCGTGGGGAATCTAGGTTCTCGATCACAGACCAGTTTATGCCGTATTTTGGGCTGAGGTTGAATCAAGCCATAACCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004439 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005975 GO:0006066 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009056 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010051 GO:0010065 GO:0010067 GO:0010154 GO:0010305 GO:0010588 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019637 GO:0019751 GO:0019932 GO:0022414 GO:0023052 GO:0030258 GO:0031323 GO:0032501 GO:0032502 GO:0032957 GO:0033554 GO:0033993 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0035556 GO:0042221 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044255 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0046030 GO:0046164 GO:0046174 GO:0046434 GO:0046486 GO:0046488 GO:0046838 GO:0046839 GO:0046855 GO:0046856 GO:0048016 GO:0048316 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052745 GO:0052866 GO:0061458 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071545 GO:0071704 GO:0071944 GO:0090698 GO:0097305 GO:0099402 GO:0104004 GO:0106019 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1905392 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

259

Amino Acids

29.57

Weight (kDa)

9.51

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04980 AT5G04980 AT5G04980 AT5G04980
fragaria_vesca	FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890
malus_domestica	MD02G1266600.v1.1 MD03G1038300.v1.1 MD03G1038700.v1.1 MD07G1053100.v1.1
prunus_persica	Prupe.2G058000_v2.0.a1
pyrus_communis	pycom02g22810 pycom07g04110 pycom16g16630
rosa_chinensis	RchiOBHm_Chr1g0330941
rosa_laevigata	RLG00000029765
rosa_multiflora	Rmu_sc0002899.1_g000009
rosa_roxburghii	Rroxscaffold_4G00319600
rosa_rugosa	Rorug01G0091100 Rorug01G0091200 Rorug01G0091300 Rorug01G0091400
rosa_samantha	Rh1AG112700 Rh1BG086700 Rh1DG118200
rosa_wichuraiana	Rw1G009180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	646
Acc36I	ACCTGC	1 cut(s)	646
AccBSI	CCGCTC	1 cut(s)	438
AccII	CGCG	1 cut(s)	353
AciI	CCGC	2 cut(s)	12, 436
AclWI	GGATC	4 cut(s)	22, 189, 202, 304
AcsI	RAATTY	3 cut(s)	292, 420, 583
AfaI	GTAC	1 cut(s)	247
AfiI	CCNNNNNNNGG	1 cut(s)	743
AgeI	ACCGGT	1 cut(s)	770
AgsI	TTSAA	2 cut(s)	579, 757
AjuI	GAANNNNNNNTTGG	2 cut(s)	625, 657
AloI	GAACNNNNNNTCC	2 cut(s)	695, 727
Alw26I	GTCTC	1 cut(s)	680
AlwI	GGATC	4 cut(s)	22, 189, 202, 304
AoxI	GGCC	1 cut(s)	474
ApoI	RAATTY	3 cut(s)	292, 420, 583
AseI	ATTAAT	1 cut(s)	170
AsiGI	ACCGGT	1 cut(s)	770
Asp700I	GAANNNNTTC	1 cut(s)	292
AspLEI	GCGC	2 cut(s)	353, 355
AspS9I	GGNCC	1 cut(s)	474
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	2 cut(s)	287, 680
BamHI	GGATCC	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	347
BbsI	GAAGAC	1 cut(s)	326
BbvCI	CCTCAGC	1 cut(s)	749
BccI	CCATC	1 cut(s)	23
BceAI	ACGGC	2 cut(s)	25, 721
BciVI	GTATCC	1 cut(s)	26
BcnI	CCSGG	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	680
BfaI	CTAG	2 cut(s)	324, 708
BfuAI	ACCTGC	1 cut(s)	646
BfuI	GTATCC	1 cut(s)	26
Bme1390I	CCNGG	1 cut(s)	45
BmgT120I	GGNCC	1 cut(s)	474
BmiI	GGNNCC	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	45
BmsI	GCATC	2 cut(s)	29, 450
BpiI	GAAGAC	1 cut(s)	326
BpmI	CTGGAG	2 cut(s)	490, 662
Bpu10I	CCTNAGC	1 cut(s)	749
BpuMI	CCSGG	1 cut(s)	45
BsaBI	GATNNNNATC	1 cut(s)	19
BsaI	GGTCTC	1 cut(s)	680
BsaJI	CCNNGG	2 cut(s)	44, 697
BsaWI	WCCGGW	1 cut(s)	770
Bsc4I	CCNNNNNNNGG	1 cut(s)	743
Bse118I	RCCGGY	1 cut(s)	770
Bse1I	ACTGG	3 cut(s)	473, 493, 727
Bse8I	GATNNNNATC	1 cut(s)	19
BseDI	CCNNGG	2 cut(s)	44, 697
BseGI	GGATG	2 cut(s)	20, 610
BseJI	GATNNNNATC	1 cut(s)	19
BseLI	CCNNNNNNNGG	1 cut(s)	743
BseMII	CTCAG	2 cut(s)	113, 740
BseNI	ACTGG	3 cut(s)	473, 493, 727
BsePI	GCGCGC	1 cut(s)	351
Bsh1236I	CGCG	1 cut(s)	353
BshFI	GGCC	1 cut(s)	476
BshTI	ACCGGT	1 cut(s)	770
BsiSI	CCGG	2 cut(s)	44, 771
BslI	CCNNNNNNNGG	1 cut(s)	743
BsmAI	GTCTC	1 cut(s)	680
BsmI	GAATGC	2 cut(s)	45, 49
BsnI	GGCC	1 cut(s)	476
Bso31I	GGTCTC	1 cut(s)	680
Bsp1286I	GDGCHC	1 cut(s)	347
Bsp143I	GATC	6 cut(s)	14, 194, 309, 385, 649, 717
BspACI	CCGC	2 cut(s)	12, 436
BspANI	GGCC	1 cut(s)	476
BspCNI	CTCAG	2 cut(s)	114, 741
BspFNI	CGCG	1 cut(s)	353
BspLI	GGNNCC	1 cut(s)	196
BspMI	ACCTGC	1 cut(s)	646
BspPI	GGATC	4 cut(s)	22, 189, 202, 304
BspTNI	GGTCTC	1 cut(s)	680
BsrBI	CCGCTC	1 cut(s)	438
BsrFI	RCCGGY	1 cut(s)	770
BsrI	ACTGG	3 cut(s)	473, 493, 727
BssAI	RCCGGY	1 cut(s)	770
BssECI	CCNNGG	2 cut(s)	44, 697
BssHII	GCGCGC	1 cut(s)	351
BssMI	GATC	6 cut(s)	14, 194, 309, 385, 649, 717
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	157
BstC8I	GCNNGC	3 cut(s)	73, 77, 353
BstDEI	CTNAG	4 cut(s)	64, 122, 284, 749
BstDSI	CCRYGG	1 cut(s)	697
BstF5I	GGATG	2 cut(s)	20, 610
BstFNI	CGCG	1 cut(s)	353
BstHHI	GCGC	2 cut(s)	353, 355
BstKTI	GATC	6 cut(s)	17, 197, 312, 388, 652, 720
BstMAI	GTCTC	1 cut(s)	680
BstMBI	GATC	6 cut(s)	14, 194, 309, 385, 649, 717
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	43
BstUI	CGCG	1 cut(s)	353
BstV2I	GAAGAC	1 cut(s)	326
BstX2I	RGATCY	3 cut(s)	14, 194, 309
BstYI	RGATCY	3 cut(s)	14, 194, 309
BsuI	GTATCC	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	476
BtgI	CCRYGG	1 cut(s)	697
BtsCI	GGATG	2 cut(s)	20, 610
BtsIMutI	CAGTG	1 cut(s)	210
BveI	ACCTGC	1 cut(s)	646
Cac8I	GCNNGC	3 cut(s)	73, 77, 353
CfoI	GCGC	2 cut(s)	353, 355
Cfr10I	RCCGGY	1 cut(s)	770
Cfr13I	GGNCC	1 cut(s)	474
Csp6I	GTAC	1 cut(s)	246
CspAI	ACCGGT	1 cut(s)	770
CviAII	CATG	5 cut(s)	142, 153, 211, 304, 383
CviJI	RGCY	6 cut(s)	345, 400, 476, 534, 748, 764
CviKI_1	RGCY	6 cut(s)	345, 400, 476, 534, 748, 764
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	4 cut(s)	64, 122, 284, 749
DpnI	GATC	6 cut(s)	16, 196, 311, 387, 651, 719
DpnII	GATC	6 cut(s)	14, 194, 309, 385, 649, 717
DraI	TTTAAA	1 cut(s)	411
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
EciI	GGCGGA	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	347
Eco31I	GGTCTC	1 cut(s)	680
EcoO109I	RGGNCCY	1 cut(s)	474
EcoRI	GAATTC	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	347
FaeI	CATG	5 cut(s)	145, 156, 214, 307, 386
FatI	CATG	5 cut(s)	141, 152, 210, 303, 382
FokI	GGATG	2 cut(s)	7, 617
FriOI	GRGCYC	1 cut(s)	347
FspBI	CTAG	2 cut(s)	324, 708
GlaI	GCGC	2 cut(s)	352, 354
GsuI	CTGGAG	2 cut(s)	490, 662
HaeIII	GGCC	1 cut(s)	476
HapII	CCGG	2 cut(s)	44, 771
HhaI	GCGC	2 cut(s)	353, 355
Hin1II	CATG	5 cut(s)	145, 156, 214, 307, 386
Hin6I	GCGC	2 cut(s)	351, 353
HinP1I	GCGC	2 cut(s)	351, 353
HinfI	GANTC	3 cut(s)	128, 704, 757
HpaII	CCGG	2 cut(s)	44, 771
HphI	GGTGA	2 cut(s)	287, 680
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	3 cut(s)	298, 318, 589
Hpy188III	TCNNGA	2 cut(s)	261, 715
Hpy8I	GTNNAC	1 cut(s)	119
Hpy99I	CGWCG	1 cut(s)	633
HpyAV	CCTTC	3 cut(s)	282, 323, 665
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	628
HpyCH4V	TGCA	6 cut(s)	20, 71, 220, 463, 599, 613
HpyF3I	CTNAG	4 cut(s)	64, 122, 284, 749
HpySE526I	ACGT	1 cut(s)	628
Hsp92II	CATG	5 cut(s)	145, 156, 214, 307, 386
HspAI	GCGC	2 cut(s)	351, 353
Kzo9I	GATC	6 cut(s)	14, 194, 309, 385, 649, 717
LmnI	GCTCC	1 cut(s)	379
LweI	GCATC	2 cut(s)	29, 450
MaeI	CTAG	2 cut(s)	324, 708
MaeII	ACGT	1 cut(s)	628
MaeIII	GTNAC	1 cut(s)	495
MalI	GATC	6 cut(s)	16, 196, 311, 387, 651, 719
MbiI	CCGCTC	1 cut(s)	438
MboI	GATC	6 cut(s)	14, 194, 309, 385, 649, 717
MboII	GAAGA	3 cut(s)	174, 331, 559
MflI	RGATCY	3 cut(s)	14, 194, 309
MhlI	GDGCHC	1 cut(s)	347
MluCI	AATT	5 cut(s)	292, 412, 420, 583, 683
MmeI	TCCRAC	1 cut(s)	139
MroXI	GAANNNNTTC	1 cut(s)	292
MseI	TTAA	4 cut(s)	170, 254, 339, 410
MslI	CAYNNNNRTG	1 cut(s)	203
MspI	CCGG	2 cut(s)	44, 771
MspR9I	CCNGG	1 cut(s)	45
Mva1269I	GAATGC	2 cut(s)	45, 49
MvnI	CGCG	1 cut(s)	353
NciI	CCSGG	1 cut(s)	45
NdeII	GATC	6 cut(s)	14, 194, 309, 385, 649, 717
NlaIII	CATG	5 cut(s)	145, 156, 214, 307, 386
NlaIV	GGNNCC	1 cut(s)	196
NspI	RCATGY	1 cut(s)	214
PaqCI	CACCTGC	1 cut(s)	646
PauI	GCGCGC	1 cut(s)	351
PctI	GAATGC	2 cut(s)	45, 49
PdmI	GAANNNNTTC	1 cut(s)	292
PfeI	GAWTC	3 cut(s)	128, 704, 757
PinAI	ACCGGT	1 cut(s)	770
PshBI	ATTAAT	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	474
PsuI	RGATCY	3 cut(s)	14, 194, 309
PteI	GCGCGC	1 cut(s)	351
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
RseI	CAYNNNNRTG	1 cut(s)	203
SaqAI	TTAA	4 cut(s)	170, 254, 339, 410
Sau3AI	GATC	6 cut(s)	14, 194, 309, 385, 649, 717
Sau96I	GGNCC	1 cut(s)	474
ScrFI	CCNGG	1 cut(s)	45
SduI	GDGCHC	1 cut(s)	347
SetI	ASST	9 cut(s)	59, 233, 260, 520, 631, 640, 676, 713, 755
SfaNI	GCATC	2 cut(s)	29, 450
SmiI	ATTTAAAT	1 cut(s)	411
SmiMI	CAYNNNNRTG	1 cut(s)	203
Sse9I	AATT	5 cut(s)	292, 412, 420, 583, 683
SsiI	CCGC	2 cut(s)	12, 436
SspI	AATATT	1 cut(s)	657
SspMI	CTAG	2 cut(s)	324, 708
StyD4I	CCNGG	1 cut(s)	43
SwaI	ATTTAAAT	1 cut(s)	411
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	1 cut(s)	631
TaqI	TCGA	6 cut(s)	53, 388, 418, 631, 652, 716
TasI	AATT	5 cut(s)	292, 412, 420, 583, 683
TatI	WGTACW	1 cut(s)	245
TfiI	GAWTC	3 cut(s)	128, 704, 757
Tru1I	TTAA	4 cut(s)	170, 254, 339, 410
Tru9I	TTAA	4 cut(s)	170, 254, 339, 410
TscAI	CASTG	1 cut(s)	210
TspDTI	ATGAA	2 cut(s)	158, 294
TspGWI	ACGGA	2 cut(s)	514, 686
TspRI	CASTG	1 cut(s)	210
VspI	ATTAAT	1 cut(s)	170
XapI	RAATTY	3 cut(s)	292, 420, 583
XceI	RCATGY	1 cut(s)	214
XmnI	GAANNNNTTC	1 cut(s)	292
XspI	CTAG	2 cut(s)	324, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.