Rh1DG118200

Type I inositol 1,4,5-trisphosphate 5-phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003538
Physical Location & Seq
Forward (+)
21544720 .. 21548425
3706 bp
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UTR
Exon/CDS
Intron
Rh1DG118200.1

Sequence Viewer

Length: 528 bp
ATGACTGTTAGGGATCAAGACCTGAAAAAGAAGTCTTTTATTCACAAGATTTTCACCATGAAAGACAGAGATGTCATATGGTTAGGAGACTTGAACTACCGCATTGCGTTGAGCTACTCTGAAACCCGGAAACTTTTGGTCGACAATGACTGGGATACACTTCTTGACAAAGATCAGCTCAAGATTGAAAGAGAAGCAGGGAGAGTATTCAAAGGATGGAAGGAAGGAAAAATTTACTTTGCACCTACTTACAAATACTTCTACAACTCCGACACTTATTTTGGCGAGATGAAAACATCAAAGAAGAAAAGGAGAACCCCAGCTTGGTGTGATAGAATACTGTGGCATGGAAATGGGATTAGACAACTGTCATACATACGTGGAGAGTCCCGTTTTTCTGACCACCGGCCAGTTTGTGCTACATTTTTTGTGGATGTCATGGTTAATGAGGATGGATTGAAGAAGGAAATACCCAGCTCTAATATGAAAGTTGAAATTGAAGAGCTTTTACCAACACGTAACAGATAG

Protein Analysis

175

Amino Acids

20.92

Weight (kDa)

9.41

Isoelectric Point (pI)

34.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos2 PF22669 20 - 140 4.3e-38 Endonuclease/Exonuclease/phosphatase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 71
AccI GTMKAC 1 cut(s) 141
AciI CCGC 1 cut(s) 100
AclWI GGATC 1 cut(s) 21
AcoI YGGCCR 1 cut(s) 407
AcsI RAATTY 1 cut(s) 231
AfiI CCNNNNNNNGG 1 cut(s) 324
AflIII ACRYGT 1 cut(s) 515
AgsI TTSAA 6 cut(s) 94, 188, 211, 460, 494, 500
AjuI GAANNNNNNNTTGG 2 cut(s) 307, 339
AluBI AGCT 5 cut(s) 114, 178, 323, 477, 505
AluI AGCT 5 cut(s) 114, 178, 323, 477, 505
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 1 cut(s) 21
AoxI GGCC 1 cut(s) 407
ApoI RAATTY 1 cut(s) 231
ArsI GACNNNNNNTTYG 2 cut(s) 263, 295
AsuC2I CCSGG 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 46
BarI GAAGNNNNNNTAC 2 cut(s) 492, 524
BccI CCATC 2 cut(s) 210, 446
BciVI GTATCC 1 cut(s) 148
BcnI CCSGG 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 81
BfuI GTATCC 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 127
BmrI ACTGGG 1 cut(s) 160
BmuI ACTGGG 1 cut(s) 160
BoxI GACNNNNGTC 1 cut(s) 367
BpuEI CTTGAG 1 cut(s) 164
BpuMI CCSGG 1 cut(s) 127
BsaAI YACGTR 2 cut(s) 380, 518
Bsc4I CCNNNNNNNGG 1 cut(s) 324
Bse118I RCCGGY 1 cut(s) 405
Bse1I ACTGG 2 cut(s) 155, 410
Bse3DI GCAATG 1 cut(s) 102
BseGI GGATG 3 cut(s) 221, 439, 457
BseLI CCNNNNNNNGG 1 cut(s) 324
BseMI GCAATG 1 cut(s) 102
BseNI ACTGG 2 cut(s) 155, 410
BseYI CCCAGC 2 cut(s) 319, 473
BshFI GGCC 1 cut(s) 409
BsiSI CCGG 2 cut(s) 127, 406
BslFI GGGAC 1 cut(s) 373
BslI CCNNNNNNNGG 1 cut(s) 324
BsmAI GTCTC 1 cut(s) 81
BsmFI GGGAC 1 cut(s) 373
BsnI GGCC 1 cut(s) 409
Bsp143I GATC 2 cut(s) 13, 172
BspACI CCGC 1 cut(s) 100
BspANI GGCC 1 cut(s) 409
BspPI GGATC 1 cut(s) 21
BspQI GCTCTTC 1 cut(s) 495
BsrDI GCAATG 1 cut(s) 102
BsrFI RCCGGY 1 cut(s) 405
BsrI ACTGG 2 cut(s) 155, 410
BssAI RCCGGY 1 cut(s) 405
BssMI GATC 2 cut(s) 13, 172
Bst4CI ACNGT 3 cut(s) 7, 342, 369
Bst6I CTCTTC 1 cut(s) 495
BstBAI YACGTR 2 cut(s) 380, 518
BstF5I GGATG 3 cut(s) 221, 439, 457
BstKTI GATC 2 cut(s) 16, 175
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 2 cut(s) 13, 172
BstPAI GACNNNNGTC 1 cut(s) 367
BstSCI CCNGG 1 cut(s) 125
BsuI GTATCC 1 cut(s) 148
BsuRI GGCC 1 cut(s) 409
BtsCI GGATG 3 cut(s) 221, 439, 457
Cfr10I RCCGGY 1 cut(s) 405
CviAII CATG 3 cut(s) 58, 347, 439
CviJI RGCY 6 cut(s) 114, 178, 323, 409, 477, 505
CviKI_1 RGCY 6 cut(s) 114, 178, 323, 409, 477, 505
DpnI GATC 2 cut(s) 15, 174
DpnII GATC 2 cut(s) 13, 172
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
EaeI YGGCCR 1 cut(s) 407
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
FaeI CATG 3 cut(s) 61, 350, 442
FaiI YATR 8 cut(s) 59, 77, 79, 348, 373, 377, 440, 485
FaqI GGGAC 1 cut(s) 373
FatI CATG 3 cut(s) 57, 346, 438
FauNDI CATATG 1 cut(s) 77
FblI GTMKAC 1 cut(s) 141
FokI GGATG 3 cut(s) 228, 446, 464
GsaI CCCAGC 2 cut(s) 323, 477
HaeIII GGCC 1 cut(s) 409
HapII CCGG 2 cut(s) 127, 406
Hin1II CATG 3 cut(s) 61, 350, 442
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 1 cut(s) 386
HpaII CCGG 2 cut(s) 127, 406
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 3 cut(s) 121, 271, 400
Hpy188III TCNNGA 3 cut(s) 17, 164, 181
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 3 cut(s) 214, 218, 457
HpyCH4III ACNGT 3 cut(s) 7, 342, 369
HpyCH4IV ACGT 2 cut(s) 379, 517
HpyCH4V TGCA 1 cut(s) 242
HpySE526I ACGT 2 cut(s) 379, 517
Hsp92II CATG 3 cut(s) 61, 350, 442
Kzo9I GATC 2 cut(s) 13, 172
LguI GCTCTTC 1 cut(s) 495
LpnPI CCDG 8 cut(s) 35, 136, 140, 183, 333, 419, 423, 487
MaeII ACGT 2 cut(s) 379, 517
MaeIII GTNAC 1 cut(s) 518
MalI GATC 2 cut(s) 15, 174
MboI GATC 2 cut(s) 13, 172
MboII GAAGA 3 cut(s) 316, 472, 512
MluCI AATT 2 cut(s) 231, 495
MlyI GAGTC 1 cut(s) 395
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 1 cut(s) 442
MseI TTAA 1 cut(s) 444
MslI CAYNNNNRTG 1 cut(s) 351
MspI CCGG 2 cut(s) 127, 406
MspR9I CCNGG 1 cut(s) 127
NciI CCSGG 1 cut(s) 127
NdeI CATATG 1 cut(s) 77
NdeII GATC 2 cut(s) 13, 172
NlaIII CATG 3 cut(s) 61, 350, 442
PciSI GCTCTTC 1 cut(s) 495
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
Ppu21I YACGTR 2 cut(s) 380, 518
PshAI GACNNNNGTC 1 cut(s) 367
PspFI CCCAGC 2 cut(s) 319, 473
RseI CAYNNNNRTG 1 cut(s) 351
SalI GTCGAC 1 cut(s) 140
SapI GCTCTTC 1 cut(s) 495
SaqAI TTAA 1 cut(s) 444
Sau3AI GATC 2 cut(s) 13, 172
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 1 cut(s) 127
SetI ASST 9 cut(s) 24, 116, 180, 247, 325, 382, 479, 507, 520
SmiMI CAYNNNNRTG 1 cut(s) 351
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 2 cut(s) 231, 495
SsiI CCGC 1 cut(s) 100
StyD4I CCNGG 1 cut(s) 125
TaaI ACNGT 3 cut(s) 7, 342, 369
TaiI ACGT 2 cut(s) 382, 520
TaqI TCGA 1 cut(s) 141
TasI AATT 2 cut(s) 231, 495
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TspDTI ATGAA 3 cut(s) 74, 305, 500
XapI RAATTY 1 cut(s) 231
XmiI GTMKAC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.