Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003538

Physical Location & Seq

Genomic Coordinates Forward (+)

14840811 .. 14842456

Gene Structure 1646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0091200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGATATTTGCTACTCCTAAGATTCTAAGGGAGGCAATAAGGGAGAGGGCAATCCAGAAGGGGTGGGAGCCACTTTTTGTGAAGAATGACAAAGTCAGATTGAGGTGTATATGTAAGGCAGAGAATTGTAATTTTGAGCGGTTTGCATCGAAGATGCAGCATGAAAATACCATGCAGATAAAGACCTACAATGGAGAGCACACATGTGCAAGGGTGCATGAAAATGGCAGTGTCAGAACACCTTATTTAGTTCAAAGGTTTGCTGAAATGATCAAGCTCAATCCAACCATTTCAACAGAGTCACTTCAACAGATCATGGCTGCTGGGATCAGAGCTAAAGTGTCATTTCAACAATCCTACAGGACTAAGAAAGCTGCTTTGGAGCTGCTAGAGAGGTCTATGAAGGAGCAGTATGCAAGGGTTCAAGACTATGCACATGAGCTAAGAAGAGTGGATCCAGCCACCACAGTAGACATCAAATGTGATTTCAACAACTCAGAGCAGCTTCCTGTGTTCCAGAGAATTTATGTATGTTTAGGGGCTTTAAAAATGGGGTTCAAGGCAGGATGCAGACCCATTTTGGGACTTGATGGATGCCACCTGAAGAGTGCCTATGGTGGACAACTACTTGCAGCTGTTGGACTTGATGCAAACAATACAACCTATGTGGTGGCATATGCTATGGTGGAGCAGGAGAGCAAGGACAGTTGGGACTGGTTTATGAGACTCTTGGTGAAGGATCTAGATATTACTGGTGAAGGGAATGGGTACACATTCATTTCAGACAAGCAAAAAGGTCTGTTGCCAGCTTGTGATGATGTGGTGCCCCTTGCAGAGCACAGGTTTTGTGTTAGGCACCTGTGGACCAACTTCAACAAGCTATTTCCTGGGAAAATGTTAAAGGACCAATTGTGGGCAGTTGCAAAGTCAACTACCATGGCTTATTATCAAAAAGAGATGGTATTAATGAACCAAATGGAGCCTGGAGCTTATAATTGGCTAACTGGGTCCAAGCTTGTGATCTCCTGTTTTGAGGATATTAGGATGAAACTGATGAAAAGGATTGCATTGAGGAGAGAGAAGATGAAAAAAGTTGTGGACACAATCTGTCCCAAGCCAAGAGAGCTTTTGGAGAAGAACAAGGTTAAGTCATCAACAGACTGCATCCCAAGGGGTACTGGCACACCAGTAATTGAGGTGGAAAGCATTGGAGGAAGCAAATATGTTGTTGATCTGACAAGAAGAGCATGTGCTTGTAGGAGGTGGGATCTCACTGGCATACCTTACAAGCATGCCATCATGCCATTTCTGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052866 GO:0071704 GO:0106019

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

438

Amino Acids

50.16

Weight (kDa)

9.31

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DBD_Tnp_Mut	PF03108	3 - 60	2.9e-06	MuDR family transposase
MULE	PF10551	194 - 289	1.2e-17	MULE transposase domain
Transposase_mut	PF00872	208 - 299	8.6e-06	Transposase, Mutator family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04980 AT5G04980 AT5G04980 AT5G04980
fragaria_vesca	FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890
malus_domestica	MD02G1266600.v1.1 MD03G1038300.v1.1 MD03G1038700.v1.1 MD07G1053100.v1.1
prunus_persica	Prupe.2G058000_v2.0.a1
pyrus_communis	pycom02g22810 pycom07g04110 pycom16g16630
rosa_chinensis	RchiOBHm_Chr1g0330941
rosa_laevigata	RLG00000029765
rosa_multiflora	Rmu_sc0002899.1_g000009
rosa_roxburghii	Rroxscaffold_4G00319600
rosa_rugosa	Rorug01G0091100 Rorug01G0091200 Rorug01G0091300 Rorug01G0091400
rosa_samantha	Rh1AG112700 Rh1BG086700 Rh1DG118200
rosa_wichuraiana	Rw1G009180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	993
AccB1I	GGYRCC	2 cut(s)	823, 855
AccBSI	CCGCTC	1 cut(s)	139
AccI	GTMKAC	1 cut(s)	471
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	5 cut(s)	335, 449, 462, 747, 1275
AcsI	RAATTY	1 cut(s)	522
AcuI	CTGAAG	1 cut(s)	623
AfaI	GTAC	2 cut(s)	770, 1177
AfiI	CCNNNNNNNGG	2 cut(s)	581, 913
AflIII	ACRYGT	1 cut(s)	203
AgsI	TTSAA	8 cut(s)	254, 294, 308, 350, 425, 490, 559, 874
AjnI	CCWGG	2 cut(s)	886, 982
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AleI	CACNNNNGTG	1 cut(s)	204
Alw21I	GWGCWC	2 cut(s)	201, 840
Alw26I	GTCTC	1 cut(s)	718
AlwI	GGATC	5 cut(s)	335, 449, 462, 747, 1275
ApeKI	GCWGC	6 cut(s)	157, 320, 374, 385, 502, 632
ApoI	RAATTY	1 cut(s)	522
AseI	ATTAAT	1 cut(s)	965
AspS9I	GGNCC	3 cut(s)	864, 904, 1008
AsuHPI	GGTGA	2 cut(s)	745, 767
AvaII	GGWCC	3 cut(s)	864, 904, 1008
BaeGI	GKGCMC	1 cut(s)	828
BamHI	GGATCC	1 cut(s)	454
BanI	GGYRCC	2 cut(s)	823, 855
Bbv12I	GWGCWC	2 cut(s)	201, 840
BbvI	GCAGC	6 cut(s)	169, 307, 361, 372, 514, 644
BccI	CCATC	3 cut(s)	584, 952, 1304
BciT130I	CCWGG	2 cut(s)	888, 984
BclI	TGATCA	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	718
BfaI	CTAG	2 cut(s)	389, 743
BfmI	CTRYAG	1 cut(s)	358
BisI	GCNGC	6 cut(s)	158, 321, 375, 386, 503, 633
BlsI	GCNGC	6 cut(s)	159, 322, 376, 387, 504, 634
Bme1390I	CCNGG	2 cut(s)	888, 984
Bme18I	GGWCC	3 cut(s)	864, 904, 1008
BmgT120I	GGNCC	3 cut(s)	864, 904, 1008
BmiI	GGNNCC	6 cut(s)	69, 456, 825, 857, 981, 1009
BmrFI	CCNGG	2 cut(s)	888, 984
BmrI	ACTGGG	1 cut(s)	1014
BmsI	GCATC	6 cut(s)	144, 155, 557, 584, 637, 1173
BmuI	ACTGGG	1 cut(s)	1014
BpmI	CTGGAG	1 cut(s)	1005
BsaJI	CCNNGG	3 cut(s)	887, 936, 1169
Bsc4I	CCNNNNNNNGG	2 cut(s)	581, 913
Bse1I	ACTGG	6 cut(s)	719, 757, 1009, 1183, 1187, 1279
BseBI	CCWGG	2 cut(s)	888, 984
BseDI	CCNNGG	3 cut(s)	887, 936, 1169
BseGI	GGATG	4 cut(s)	572, 599, 1050, 1164
BseLI	CCNNNNNNNGG	2 cut(s)	581, 913
BseMII	CTCAG	1 cut(s)	510
BseNI	ACTGG	6 cut(s)	719, 757, 1009, 1183, 1187, 1279
BseRI	GAGGAG	1 cut(s)	1087
BseSI	GKGCMC	1 cut(s)	828
BseXI	GCAGC	6 cut(s)	169, 307, 361, 372, 514, 644
BseYI	CCCAGC	1 cut(s)	323
BshNI	GGYRCC	2 cut(s)	823, 855
BsiHKAI	GWGCWC	2 cut(s)	201, 840
BslFI	GGGAC	3 cut(s)	597, 725, 1095
BslI	CCNNNNNNNGG	2 cut(s)	581, 913
BsmAI	GTCTC	1 cut(s)	718
BsmFI	GGGAC	3 cut(s)	597, 725, 1095
Bsp1286I	GDGCHC	3 cut(s)	201, 828, 840
Bsp143I	GATC	8 cut(s)	270, 312, 327, 454, 739, 1020, 1231, 1267
Bsp19I	CCATGG	1 cut(s)	936
BspACI	CCGC	1 cut(s)	139
BspCNI	CTCAG	1 cut(s)	509
BspLI	GGNNCC	6 cut(s)	69, 456, 825, 857, 981, 1009
BspPI	GGATC	5 cut(s)	335, 449, 462, 747, 1275
BspQI	GCTCTTC	1 cut(s)	1237
BspT107I	GGYRCC	2 cut(s)	823, 855
BsrBI	CCGCTC	1 cut(s)	139
BsrI	ACTGG	6 cut(s)	719, 757, 1009, 1183, 1187, 1279
BssECI	CCNNGG	3 cut(s)	887, 936, 1169
BssMI	GATC	8 cut(s)	270, 312, 327, 454, 739, 1020, 1231, 1267
BssT1I	CCWWGG	2 cut(s)	936, 1169
Bst2UI	CCWGG	2 cut(s)	888, 984
Bst4CI	ACNGT	2 cut(s)	469, 707
Bst6I	CTCTTC	3 cut(s)	442, 599, 1237
BstC8I	GCNNGC	2 cut(s)	807, 1293
BstDEI	CTNAG	5 cut(s)	18, 26, 366, 443, 496
BstDSI	CCRYGG	1 cut(s)	936
BstF5I	GGATG	4 cut(s)	572, 599, 1050, 1164
BstKTI	GATC	8 cut(s)	273, 315, 330, 457, 742, 1023, 1234, 1270
BstMAI	GTCTC	1 cut(s)	718
BstMBI	GATC	8 cut(s)	270, 312, 327, 454, 739, 1020, 1231, 1267
BstMWI	GCNNNNNNNGC	2 cut(s)	1123, 1309
BstNI	CCWGG	2 cut(s)	888, 984
BstNSI	RCATGY	3 cut(s)	207, 1251, 1295
BstSCI	CCNGG	2 cut(s)	886, 982
BstSFI	CTRYAG	1 cut(s)	358
BstSLI	GKGCMC	1 cut(s)	828
BstV1I	GCAGC	6 cut(s)	169, 307, 361, 372, 514, 644
BstX2I	RGATCY	3 cut(s)	454, 739, 1267
BstYI	RGATCY	3 cut(s)	454, 739, 1267
BtgI	CCRYGG	1 cut(s)	936
BtsCI	GGATG	4 cut(s)	572, 599, 1050, 1164
BtsI	GCAGTG	1 cut(s)	235
BtsIMutI	CAGTG	2 cut(s)	235, 1272
Cac8I	GCNNGC	2 cut(s)	807, 1293
Cfr13I	GGNCC	3 cut(s)	864, 904, 1008
Csp6I	GTAC	2 cut(s)	769, 1176
CspCI	CAANNNNNGTGG	2 cut(s)	648, 683
CviQI	GTAC	2 cut(s)	769, 1176
DdeI	CTNAG	5 cut(s)	18, 26, 366, 443, 496
DpnI	GATC	8 cut(s)	272, 314, 329, 456, 741, 1022, 1233, 1269
DpnII	GATC	8 cut(s)	270, 312, 327, 454, 739, 1020, 1231, 1267
DraI	TTTAAA	1 cut(s)	546
Eam1104I	CTCTTC	3 cut(s)	442, 599, 1237
EarI	CTCTTC	3 cut(s)	442, 599, 1237
Eco130I	CCWWGG	2 cut(s)	936, 1169
Eco47I	GGWCC	3 cut(s)	864, 904, 1008
Eco57I	CTGAAG	1 cut(s)	623
EcoRII	CCWGG	2 cut(s)	886, 982
EcoT14I	CCWWGG	2 cut(s)	936, 1169
ErhI	CCWWGG	2 cut(s)	936, 1169
FaqI	GGGAC	3 cut(s)	597, 725, 1095
FauNDI	CATATG	1 cut(s)	676
FbaI	TGATCA	1 cut(s)	270
FblI	GTMKAC	1 cut(s)	471
Fnu4HI	GCNGC	6 cut(s)	158, 321, 375, 386, 503, 633
FokI	GGATG	4 cut(s)	579, 606, 1057, 1151
Fsp4HI	GCNGC	6 cut(s)	158, 321, 375, 386, 503, 633
FspBI	CTAG	2 cut(s)	389, 743
GluI	GCNGC	6 cut(s)	158, 321, 375, 386, 503, 633
GsaI	CCCAGC	1 cut(s)	327
GsuI	CTGGAG	1 cut(s)	1005
HincII	GTYRAC	1 cut(s)	930
HindII	GTYRAC	1 cut(s)	930
HindIII	AAGCTT	1 cut(s)	1013
HinfI	GANTC	3 cut(s)	22, 299, 726
HphI	GGTGA	2 cut(s)	745, 767
Hpy166II	GTNNAC	6 cut(s)	472, 620, 771, 864, 930, 1099
Hpy188I	TCNGA	6 cut(s)	98, 236, 332, 499, 784, 1236
Hpy188III	TCNNGA	4 cut(s)	55, 425, 517, 743
Hpy8I	GTNNAC	6 cut(s)	472, 620, 771, 864, 930, 1099
HpyAV	CCTTC	4 cut(s)	52, 397, 730, 752
HpyCH4III	ACNGT	2 cut(s)	469, 707
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1123, 1309
HpyF3I	CTNAG	5 cut(s)	18, 26, 366, 443, 496
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	8 cut(s)	270, 312, 327, 454, 739, 1020, 1231, 1267
LguI	GCTCTTC	1 cut(s)	1237
LmnI	GCTCC	6 cut(s)	67, 382, 406, 688, 979, 986
Lsp1109I	GCAGC	6 cut(s)	169, 307, 361, 372, 514, 644
LweI	GCATC	6 cut(s)	144, 155, 557, 584, 637, 1173
MaeI	CTAG	2 cut(s)	389, 743
MaeIII	GTNAC	1 cut(s)	300
MalI	GATC	8 cut(s)	272, 314, 329, 456, 741, 1022, 1233, 1269
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	8 cut(s)	270, 312, 327, 454, 739, 1020, 1231, 1267
MboII	GAAGA	7 cut(s)	94, 163, 459, 616, 1093, 1147, 1254
MfeI	CAATTG	1 cut(s)	908
MflI	RGATCY	3 cut(s)	454, 739, 1267
MhlI	GDGCHC	3 cut(s)	201, 828, 840
MluCI	AATT	6 cut(s)	124, 130, 522, 908, 994, 1191
MlyI	GAGTC	2 cut(s)	308, 720
MmeI	TCCRAC	2 cut(s)	308, 619
MnlI	CCTC	9 cut(s)	25, 39, 96, 387, 1027, 1065, 1189, 1205, 1254
MseI	TTAA	4 cut(s)	545, 899, 965, 1146
MslI	CAYNNNNRTG	2 cut(s)	204, 222
MspA1I	CMGCKG	1 cut(s)	635
MspR9I	CCNGG	2 cut(s)	888, 984
MunI	CAATTG	1 cut(s)	908
MvaI	CCWGG	2 cut(s)	888, 984
MwoI	GCNNNNNNNGC	2 cut(s)	1123, 1309
NcoI	CCATGG	1 cut(s)	936
NdeI	CATATG	1 cut(s)	676
NdeII	GATC	8 cut(s)	270, 312, 327, 454, 739, 1020, 1231, 1267
NlaIV	GGNNCC	6 cut(s)	69, 456, 825, 857, 981, 1009
NmuCI	GTSAC	1 cut(s)	300
NspI	RCATGY	3 cut(s)	207, 1251, 1295
OliI	CACNNNNGTG	1 cut(s)	204
PaeI	GCATGC	1 cut(s)	1295
PciI	ACATGT	1 cut(s)	203
PciSI	GCTCTTC	1 cut(s)	1237
PfeI	GAWTC	1 cut(s)	22
PflFI	GACNNNGTC	1 cut(s)	92
PkrI	GCNGC	6 cut(s)	159, 322, 376, 387, 504, 634
PleI	GAGTC	2 cut(s)	307, 720
PpsI	GAGTC	2 cut(s)	307, 720
PscI	ACATGT	1 cut(s)	203
PshBI	ATTAAT	1 cut(s)	965
PsiI	TTATAA	1 cut(s)	993
Psp6I	CCWGG	2 cut(s)	886, 982
PspFI	CCCAGC	1 cut(s)	323
PspGI	CCWGG	2 cut(s)	886, 982
PspN4I	GGNNCC	6 cut(s)	69, 456, 825, 857, 981, 1009
PspPI	GGNCC	3 cut(s)	864, 904, 1008
PsuI	RGATCY	3 cut(s)	454, 739, 1267
PsyI	GACNNNGTC	1 cut(s)	92
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	2 cut(s)	770, 1177
RsaNI	GTAC	2 cut(s)	769, 1176
RseI	CAYNNNNRTG	2 cut(s)	204, 222
SapI	GCTCTTC	1 cut(s)	1237
SaqAI	TTAA	4 cut(s)	545, 899, 965, 1146
SatI	GCNGC	6 cut(s)	158, 321, 375, 386, 503, 633
Sau3AI	GATC	8 cut(s)	270, 312, 327, 454, 739, 1020, 1231, 1267
Sau96I	GGNCC	3 cut(s)	864, 904, 1008
SchI	GAGTC	2 cut(s)	308, 720
ScrFI	CCNGG	2 cut(s)	888, 984
SduI	GDGCHC	3 cut(s)	201, 828, 840
SfaNI	GCATC	6 cut(s)	144, 155, 557, 584, 637, 1173
SfcI	CTRYAG	1 cut(s)	358
SinI	GGWCC	3 cut(s)	864, 904, 1008
SmiMI	CAYNNNNRTG	2 cut(s)	204, 222
SphI	GCATGC	1 cut(s)	1295
Sse9I	AATT	6 cut(s)	124, 130, 522, 908, 994, 1191
SsiI	CCGC	1 cut(s)	139
SspMI	CTAG	2 cut(s)	389, 743
StyD4I	CCNGG	2 cut(s)	886, 982
StyI	CCWWGG	2 cut(s)	936, 1169
TaaI	ACNGT	2 cut(s)	469, 707
TaqI	TCGA	1 cut(s)	149
TasI	AATT	6 cut(s)	124, 130, 522, 908, 994, 1191
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	4 cut(s)	545, 899, 965, 1146
Tru9I	TTAA	4 cut(s)	545, 899, 965, 1146
TscAI	CASTG	2 cut(s)	235, 1279
TseFI	GTSAC	1 cut(s)	300
TseI	GCWGC	6 cut(s)	157, 320, 374, 385, 502, 632
Tsp45I	GTSAC	1 cut(s)	300
TspDTI	ATGAA	8 cut(s)	177, 234, 416, 766, 983, 1061, 1070, 1100
TspRI	CASTG	2 cut(s)	235, 1279
Tth111I	GACNNNGTC	1 cut(s)	92
VpaK11BI	GGWCC	3 cut(s)	864, 904, 1008
VspI	ATTAAT	1 cut(s)	965
XapI	RAATTY	1 cut(s)	522
XbaI	TCTAGA	1 cut(s)	742
XceI	RCATGY	3 cut(s)	207, 1251, 1295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	980
XmiI	GTMKAC	1 cut(s)	471
XspI	CTAG	2 cut(s)	389, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.