Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0003538

Physical Location & Seq

Genomic Coordinates Forward (+)

3037938 .. 3045448

Gene Structure 7511 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1038300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGACTGTCAGCAGTCAAGATGTGAAAAAGAAGTCTTTTATTCATAAAATCTTCACCACAAAGGAGAAAGAAGGAAGCAGCTCTTCGGATTGCTCAGCACCCCTTCAAGCTCTGGAAGTGTTTGCACAAATTGGAGCTCAAAAGCGTCAGATTTTATGGAACAAATGGTCTCAGAGAAGCAGATTACACTGCGCAGTAGCAGCACAGGACCCGGTGGGCCTGGGTTTGCCGCTTGAAGATGACGTGGTCCTGATAGTCGGTCACTTCCGCGACAGTTCCGAACAAAGGATTCGGTTCCCAAGCTCCAACGATTGTGTCTGTGGCAAAGAGAATTCAGGAAGAGTGGAAGATCCAAGAAGGATTTGCCAGGTGAATGCAAACGCTGCAAAATGGACGAAAGCCAGCATTTCGACTAGCTGCTGCAATACACAGTTGAGGAGTCAGATTGGTGGGAAGCAATTCAGAGGCACGTCATCTTCTAACTGGGTCATTGTCTTCTTTCTTCACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052866 GO:0071704 GO:0106019

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

171

Amino Acids

18.89

Weight (kDa)

9.34

Isoelectric Point (pI)

51.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04980 AT5G04980 AT5G04980 AT5G04980
fragaria_vesca	FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890 FvH4_7g04890
malus_domestica	MD02G1266600.v1.1 MD03G1038300.v1.1 MD03G1038700.v1.1 MD07G1053100.v1.1
prunus_persica	Prupe.2G058000_v2.0.a1
pyrus_communis	pycom02g22810 pycom07g04110 pycom16g16630
rosa_chinensis	RchiOBHm_Chr1g0330941
rosa_laevigata	RLG00000029765
rosa_multiflora	Rmu_sc0002899.1_g000009
rosa_roxburghii	Rroxscaffold_4G00319600
rosa_rugosa	Rorug01G0091100 Rorug01G0091200 Rorug01G0091300 Rorug01G0091400
rosa_samantha	Rh1AG112700 Rh1BG086700 Rh1DG118200
rosa_wichuraiana	Rw1G009180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	193
AccII	CGCG	1 cut(s)	270
AciI	CCGC	2 cut(s)	230, 268
AclWI	GGATC	1 cut(s)	344
AcsI	RAATTY	1 cut(s)	331
AfiI	CCNNNNNNNGG	1 cut(s)	285
AgsI	TTSAA	2 cut(s)	107, 236
AjiI	CACGTC	2 cut(s)	244, 471
AjnI	CCWGG	2 cut(s)	219, 366
AluBI	AGCT	5 cut(s)	81, 110, 137, 303, 417
AluI	AGCT	5 cut(s)	81, 110, 137, 303, 417
Alw21I	GWGCWC	1 cut(s)	139
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	1 cut(s)	344
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	5 cut(s)	78, 200, 383, 417, 420
ApoI	RAATTY	1 cut(s)	331
Asp700I	GAANNNNTTC	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	3 cut(s)	208, 217, 247
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	2 cut(s)	46, 382
AvaII	GGWCC	2 cut(s)	208, 247
BanII	GRGCYC	1 cut(s)	139
BbsI	GAAGAC	1 cut(s)	487
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	5 cut(s)	90, 212, 370, 404, 407
BciT130I	CCWGG	2 cut(s)	221, 368
BcnI	CCSGG	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	1 cut(s)	414
BisI	GCNGC	6 cut(s)	79, 201, 230, 384, 418, 421
BlpI	GCTNAGC	1 cut(s)	94
BlsI	GCNGC	6 cut(s)	80, 202, 231, 385, 419, 422
Bme1390I	CCNGG	3 cut(s)	212, 221, 368
Bme18I	GGWCC	2 cut(s)	208, 247
BmgBI	CACGTC	2 cut(s)	244, 471
BmgT120I	GGNCC	3 cut(s)	208, 217, 247
BmiI	GGNNCC	2 cut(s)	210, 296
BmrFI	CCNGG	3 cut(s)	212, 221, 368
BmrI	ACTGGG	1 cut(s)	493
BmuI	ACTGGG	1 cut(s)	493
BpiI	GAAGAC	1 cut(s)	487
Bpu1102I	GCTNAGC	1 cut(s)	94
BpuMI	CCSGG	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse1I	ACTGG	1 cut(s)	488
BseBI	CCWGG	2 cut(s)	221, 368
BseDI	CCNNGG	1 cut(s)	220
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseMII	CTCAG	2 cut(s)	108, 185
BseNI	ACTGG	1 cut(s)	488
BseRI	GAGGAG	1 cut(s)	451
BseXI	GCAGC	5 cut(s)	90, 212, 370, 404, 407
Bsh1236I	CGCG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmAI	GTCTC	1 cut(s)	174
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	1 cut(s)	219
Bso31I	GGTCTC	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	349
Bsp1720I	GCTNAGC	1 cut(s)	94
BspACI	CCGC	2 cut(s)	230, 268
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	2 cut(s)	107, 184
BspFNI	CGCG	1 cut(s)	270
BspLI	GGNNCC	2 cut(s)	210, 296
BspPI	GGATC	1 cut(s)	344
BspQI	GCTCTTC	1 cut(s)	88
BspTNI	GGTCTC	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	488
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	1 cut(s)	349
Bst2UI	CCWGG	2 cut(s)	221, 368
Bst4CI	ACNGT	3 cut(s)	7, 275, 432
Bst6I	CTCTTC	2 cut(s)	88, 334
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	2 cut(s)	94, 171
BstFNI	CGCG	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	1 cut(s)	352
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 383
BstNI	CCWGG	2 cut(s)	221, 368
BstSCI	CCNGG	3 cut(s)	210, 219, 366
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	5 cut(s)	90, 212, 370, 404, 407
BstV2I	GAAGAC	1 cut(s)	487
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	219
BtrI	CACGTC	2 cut(s)	244, 471
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	403
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	3 cut(s)	208, 217, 247
CseI	GACGC	1 cut(s)	134
CviJI	RGCY	7 cut(s)	81, 110, 137, 219, 303, 401, 417
CviKI_1	RGCY	7 cut(s)	81, 110, 137, 219, 303, 401, 417
DdeI	CTNAG	2 cut(s)	94, 171
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
Eam1104I	CTCTTC	2 cut(s)	88, 334
EarI	CTCTTC	2 cut(s)	88, 334
Ecl136II	GAGCTC	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	139
Eco31I	GGTCTC	1 cut(s)	174
Eco47I	GGWCC	2 cut(s)	208, 247
Eco53kI	GAGCTC	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRI	GAATTC	1 cut(s)	331
EcoRII	CCWGG	2 cut(s)	219, 366
EcoT38I	GRGCYC	1 cut(s)	139
FaiI	YATR	3 cut(s)	45, 157, 511
FalI	AAGNNNNNCTT	2 cut(s)	67, 99
Fnu4HI	GCNGC	6 cut(s)	79, 201, 230, 384, 418, 421
FriOI	GRGCYC	1 cut(s)	139
Fsp4HI	GCNGC	6 cut(s)	79, 201, 230, 384, 418, 421
FspBI	CTAG	1 cut(s)	414
FspI	TGCGCA	1 cut(s)	193
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	6 cut(s)	79, 201, 230, 384, 418, 421
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	1 cut(s)	212
HgaI	GACGC	1 cut(s)	134
HhaI	GCGC	1 cut(s)	194
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HinfI	GANTC	2 cut(s)	289, 439
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	2 cut(s)	46, 382
Hpy188I	TCNGA	6 cut(s)	88, 150, 174, 280, 444, 464
Hpy188III	TCNNGA	4 cut(s)	17, 113, 250, 336
HpyAV	CCTTC	3 cut(s)	65, 113, 351
HpyCH4III	ACNGT	3 cut(s)	7, 275, 432
HpyCH4IV	ACGT	2 cut(s)	243, 470
HpyCH4V	TGCA	4 cut(s)	125, 377, 386, 423
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 383
HpyF3I	CTNAG	2 cut(s)	94, 171
HpySE526I	ACGT	2 cut(s)	243, 470
HspAI	GCGC	1 cut(s)	192
Kzo9I	GATC	1 cut(s)	349
LguI	GCTCTTC	1 cut(s)	88
LmnI	GCTCC	2 cut(s)	134, 308
Lsp1109I	GCAGC	5 cut(s)	90, 212, 370, 404, 407
MaeI	CTAG	1 cut(s)	414
MaeII	ACGT	2 cut(s)	243, 470
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	8 cut(s)	43, 75, 248, 351, 359, 468, 487, 494
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	3 cut(s)	129, 331, 458
MlyI	GAGTC	1 cut(s)	448
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	2 cut(s)	429, 458
MroXI	GAANNNNTTC	1 cut(s)	458
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	3 cut(s)	212, 221, 368
Mva1269I	GAATGC	1 cut(s)	379
MvaI	CCWGG	2 cut(s)	221, 368
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	2 cut(s)	200, 383
NciI	CCSGG	1 cut(s)	212
NdeII	GATC	1 cut(s)	349
NlaIV	GGNNCC	2 cut(s)	210, 296
NmuCI	GTSAC	1 cut(s)	260
NsbI	TGCGCA	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	88
PctI	GAATGC	1 cut(s)	379
PdmI	GAANNNNTTC	1 cut(s)	458
PfeI	GAWTC	1 cut(s)	289
PflFI	GACNNNGTC	1 cut(s)	245
PkrI	GCNGC	6 cut(s)	80, 202, 231, 385, 419, 422
PleI	GAGTC	1 cut(s)	447
PpsI	GAGTC	1 cut(s)	447
PpuMI	RGGWCCY	1 cut(s)	208
Psp124BI	GAGCTC	1 cut(s)	139
Psp5II	RGGWCCY	1 cut(s)	208
Psp6I	CCWGG	2 cut(s)	219, 366
PspGI	CCWGG	2 cut(s)	219, 366
PspN4I	GGNNCC	2 cut(s)	210, 296
PspPI	GGNCC	3 cut(s)	208, 217, 247
PspPPI	RGGWCCY	1 cut(s)	208
PsuI	RGATCY	1 cut(s)	349
PsyI	GACNNNGTC	1 cut(s)	245
SacI	GAGCTC	1 cut(s)	139
SapI	GCTCTTC	1 cut(s)	88
SatI	GCNGC	6 cut(s)	79, 201, 230, 384, 418, 421
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	3 cut(s)	208, 217, 247
SchI	GAGTC	1 cut(s)	448
ScrFI	CCNGG	3 cut(s)	212, 221, 368
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	8 cut(s)	83, 112, 139, 246, 305, 372, 419, 473
SinI	GGWCC	2 cut(s)	208, 247
Sse9I	AATT	3 cut(s)	129, 331, 458
SsiI	CCGC	2 cut(s)	230, 268
SspMI	CTAG	1 cut(s)	414
SstI	GAGCTC	1 cut(s)	139
StyD4I	CCNGG	3 cut(s)	210, 219, 366
TaaI	ACNGT	3 cut(s)	7, 275, 432
TaiI	ACGT	2 cut(s)	246, 473
TaqI	TCGA	1 cut(s)	410
TaqII	GACCGA	1 cut(s)	248
TasI	AATT	3 cut(s)	129, 331, 458
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	1 cut(s)	289
TscAI	CASTG	1 cut(s)	194
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	5 cut(s)	78, 200, 383, 417, 420
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	194
Tth111I	GACNNNGTC	1 cut(s)	245
VpaK11BI	GGWCC	2 cut(s)	208, 247
XapI	RAATTY	1 cut(s)	331
XmnI	GAANNNNTTC	1 cut(s)	458
XspI	CTAG	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.