AT5G07840

ankyrin repeat family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005106
Physical Location & Seq
Reverse (-)
2506656 .. 2508373
1718 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G07840.1

Sequence Viewer

Length: 528 bp
ATGCTCCAAGAGCAGCCGGTTGCGTTGTCCTTTCGGCCTAACTCATTTAGGCGCCGGTCCATGGAAACGGGTGTTGACAGAGATGACAGGGGGTGGACTCAGCTTCACATCAAAGCTCGTGAAGGCGATCTCAAAGCTGTTAAAGAGCTCCTTGACCAAGGAGCAGACGTGAACGCTCTAGCTTGTGGACCTAAATCAAAAGGAATGACTCCTCTTCACCTTGCTGCCAAAGGAGGTCACATCGAAGTTATGGACTTGCTTCTTGAACGTGGAGCCAACATGGAAGCTAGAACCTCTGGTGCTTGTGGCTGGACTCCTCTCCATGCTGCAGCTAAAGAACGGAAAAGAGAAGCTGTCAAGTTTCTTGTGGGGAACGGTGCTTTCTTACCTGATGATATAACCGACAGTAGGTTCAACCCGCCGGTTCAGTACTGTCACGGCTTGGAATGGGCTTATGAAGAGAGGAAGAAACTCAGTGAAGATACTTCTTTATCTTGTGGAGACACTTCTTGCAGTTCTGCGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000278 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0001508 GO:0001932 GO:0001933 GO:0002028 GO:0003008 GO:0003254 GO:0003674 GO:0003824 GO:0004842 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005783 GO:0005794 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0006810 GO:0006888 GO:0006892 GO:0006893 GO:0006996 GO:0007009 GO:0007010 GO:0007016 GO:0007049 GO:0007154 GO:0007275 GO:0007399 GO:0007409 GO:0007528 GO:0008037 GO:0008092 GO:0008104 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009553 GO:0009566 GO:0009567 GO:0009628 GO:0009639 GO:0009642 GO:0009644 GO:0009653 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009962 GO:0009963 GO:0009986 GO:0009987 GO:0009988 GO:0010033 GO:0010035 GO:0010038 GO:0010218 GO:0010256 GO:0010313 GO:0010468 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0010647 GO:0010649 GO:0010650 GO:0010765 GO:0010959 GO:0010960 GO:0012505 GO:0014704 GO:0014731 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0016328 GO:0016528 GO:0016529 GO:0016567 GO:0016740 GO:0019220 GO:0019222 GO:0019226 GO:0019228 GO:0019538 GO:0019787 GO:0019899 GO:0019953 GO:0022008 GO:0022402 GO:0022407 GO:0022409 GO:0022412 GO:0022414 GO:0022607 GO:0022898 GO:0023052 GO:0030016 GO:0030017 GO:0030018 GO:0030030 GO:0030054 GO:0030154 GO:0030155 GO:0030182 GO:0030315 GO:0030424 GO:0030425 GO:0030507 GO:0030674 GO:0031175 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031537 GO:0031539 GO:0031540 GO:0031542 GO:0031594 GO:0031625 GO:0031674 GO:0032026 GO:0032268 GO:0032269 GO:0032386 GO:0032388 GO:0032409 GO:0032410 GO:0032411 GO:0032412 GO:0032413 GO:0032414 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032507 GO:0032879 GO:0032880 GO:0032989 GO:0032990 GO:0032991 GO:0033036 GO:0033157 GO:0033267 GO:0033268 GO:0034110 GO:0034112 GO:0034285 GO:0034613 GO:0034762 GO:0034763 GO:0034764 GO:0034765 GO:0034766 GO:0034767 GO:0035637 GO:0036211 GO:0036477 GO:0042221 GO:0042325 GO:0042326 GO:0042383 GO:0042391 GO:0042592 GO:0042886 GO:0042995 GO:0043001 GO:0043005 GO:0043034 GO:0043170 GO:0043194 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043266 GO:0043267 GO:0043269 GO:0043270 GO:0043271 GO:0043292 GO:0043412 GO:0044085 GO:0044091 GO:0044092 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044291 GO:0044304 GO:0044325 GO:0044389 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044456 GO:0044459 GO:0044463 GO:0044464 GO:0044703 GO:0045026 GO:0045184 GO:0045185 GO:0045202 GO:0045211 GO:0045296 GO:0045760 GO:0045785 GO:0045838 GO:0045936 GO:0046907 GO:0048193 GO:0048229 GO:0048468 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050808 GO:0050839 GO:0050877 GO:0050896 GO:0051049 GO:0051050 GO:0051051 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051235 GO:0051246 GO:0051248 GO:0051301 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051716 GO:0055065 GO:0055080 GO:0060090 GO:0060255 GO:0060341 GO:0061024 GO:0061025 GO:0061564 GO:0061640 GO:0061936 GO:0061951 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070647 GO:0070727 GO:0070887 GO:0071241 GO:0071248 GO:0071286 GO:0071702 GO:0071704 GO:0071705 GO:0071709 GO:0071840 GO:0071944 GO:0072507 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080090 GO:0080173 GO:0090087 GO:0090150 GO:0090313 GO:0090314 GO:0090316 GO:0097060 GO:0097447 GO:0097458 GO:0098590 GO:0098771 GO:0098794 GO:0098876 GO:0098900 GO:0098901 GO:0098902 GO:0099080 GO:0099081 GO:0099512 GO:0120025 GO:0120036 GO:0120038 GO:0120039 GO:0140096 GO:1900825 GO:1900827 GO:1901016 GO:1901017 GO:1901379 GO:1901380 GO:1901564 GO:1901700 GO:1902259 GO:1902260 GO:1902305 GO:1902307 GO:1902494 GO:1903047 GO:1903533 GO:1903817 GO:1903827 GO:1903829 GO:1904062 GO:1904063 GO:1904064 GO:1904181 GO:1904951 GO:1905475 GO:1905477 GO:1990234 GO:1990778 GO:2000649 GO:2000651 GO:2001257 GO:2001258 GO:2001259
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_3 Ank_4

Protein Analysis

175

Amino Acids

19.26

Weight (kDa)

6.52

Isoelectric Point (pI)

41.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_KRIT1 PF24521 33 - 128 1.7e-07 KRIT1 ankyrin-repeats domain
Ank_2 PF12796 35 - 127 5.6e-20 Ankyrin repeats (3 copies)
Ank_4 PF13637 35 - 88 3.5e-10 Ankyrin repeats (many copies)
Ank PF00023 68 - 98 1.4e-09 Ankyrin repeat
Ank_4 PF13637 75 - 123 2.5e-08 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 51
AciI CCGC 1 cut(s) 419
AcyI GRCGYC 1 cut(s) 52
AfaI GTAC 1 cut(s) 431
AfiI CCNNNNNNNGG 2 cut(s) 61, 408
AgsI TTSAA 2 cut(s) 266, 415
AjiI CACGTC 1 cut(s) 169
AluBI AGCT 8 cut(s) 103, 116, 137, 148, 182, 287, 332, 353
AluI AGCT 8 cut(s) 103, 116, 137, 148, 182, 287, 332, 353
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 1 cut(s) 495
AoxI GGCC 1 cut(s) 35
ApeKI GCWGC 4 cut(s) 13, 224, 326, 329
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 2 cut(s) 57, 188
AsuHPI GGTGA 1 cut(s) 209
AvaII GGWCC 2 cut(s) 57, 188
BanI GGYRCC 1 cut(s) 51
BanII GRGCYC 1 cut(s) 150
BauI CACGAG 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 4 cut(s) 25, 211, 313, 341
BceAI ACGGC 1 cut(s) 454
BcoDI GTCTC 1 cut(s) 495
BfaI CTAG 2 cut(s) 179, 288
BfmI CTRYAG 1 cut(s) 327
BfoI RGCGCY 1 cut(s) 55
BisI GCNGC 4 cut(s) 14, 225, 327, 330
BlsI GCNGC 4 cut(s) 15, 226, 328, 331
BmcAI AGTACT 1 cut(s) 431
Bme18I GGWCC 2 cut(s) 57, 188
BmgBI CACGTC 1 cut(s) 169
BmgT120I GGNCC 2 cut(s) 57, 188
BmiI GGNNCC 2 cut(s) 53, 274
BsaHI GRCGYC 1 cut(s) 52
BsaJI CCNNGG 2 cut(s) 60, 157
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 408
Bse118I RCCGGY 3 cut(s) 16, 54, 421
BseDI CCNNGG 2 cut(s) 60, 157
BseLI CCNNNNNNNGG 2 cut(s) 61, 408
BseMII CTCAG 2 cut(s) 113, 487
BseRI GAGGAG 2 cut(s) 201, 306
BseXI GCAGC 4 cut(s) 25, 211, 313, 341
BshFI GGCC 1 cut(s) 37
BshNI GGYRCC 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 3 cut(s) 17, 55, 422
BslI CCNNNNNNNGG 2 cut(s) 61, 408
BsmAI GTCTC 1 cut(s) 495
BsnI GGCC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 1 cut(s) 127
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 1 cut(s) 419
BspANI GGCC 1 cut(s) 37
BspCNI CTCAG 2 cut(s) 112, 486
BspLI GGNNCC 2 cut(s) 53, 274
BspMAI CTGCAG 1 cut(s) 331
BspT107I GGYRCC 1 cut(s) 51
BsrFI RCCGGY 3 cut(s) 16, 54, 421
BssAI RCCGGY 3 cut(s) 16, 54, 421
BssECI CCNNGG 2 cut(s) 60, 157
BssMI GATC 1 cut(s) 127
BssNI GRCGYC 1 cut(s) 52
BssSI CACGAG 1 cut(s) 117
BssT1I CCWWGG 2 cut(s) 60, 157
Bst2BI CACGAG 1 cut(s) 117
Bst4CI ACNGT 3 cut(s) 377, 407, 434
Bst6I CTCTTC 2 cut(s) 219, 453
BstACI GRCGYC 1 cut(s) 52
BstDEI CTNAG 2 cut(s) 99, 473
BstDSI CCRYGG 1 cut(s) 60
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 1 cut(s) 495
BstMBI GATC 1 cut(s) 127
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 327
BstV1I GCAGC 4 cut(s) 25, 211, 313, 341
BsuRI GGCC 1 cut(s) 37
BtgI CCRYGG 1 cut(s) 60
BtrI CACGTC 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 481
CfoI GCGC 1 cut(s) 54
Cfr10I RCCGGY 3 cut(s) 16, 54, 421
Cfr13I GGNCC 2 cut(s) 57, 188
Csp6I GTAC 1 cut(s) 430
CviAII CATG 3 cut(s) 61, 280, 323
CviQI GTAC 1 cut(s) 430
DdeI CTNAG 2 cut(s) 99, 473
DinI GGCGCC 1 cut(s) 53
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
Eam1104I CTCTTC 2 cut(s) 219, 453
EarI CTCTTC 2 cut(s) 219, 453
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 2 cut(s) 60, 157
Eco24I GRGCYC 1 cut(s) 150
Eco47I GGWCC 2 cut(s) 57, 188
Eco53kI GAGCTC 1 cut(s) 148
EcoICRI GAGCTC 1 cut(s) 148
EcoT14I CCWWGG 2 cut(s) 60, 157
EcoT38I GRGCYC 1 cut(s) 150
EgeI GGCGCC 1 cut(s) 53
EheI GGCGCC 1 cut(s) 53
ErhI CCWWGG 2 cut(s) 60, 157
FaeI CATG 3 cut(s) 64, 283, 326
FaiI YATR 6 cut(s) 62, 251, 281, 324, 398, 456
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FatI CATG 3 cut(s) 60, 279, 322
FauI CCCGC 1 cut(s) 426
Fnu4HI GCNGC 4 cut(s) 14, 225, 327, 330
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 4 cut(s) 14, 225, 327, 330
FspBI CTAG 2 cut(s) 179, 288
GlaI GCGC 1 cut(s) 53
GluI GCNGC 4 cut(s) 14, 225, 327, 330
HaeII RGCGCY 1 cut(s) 55
HaeIII GGCC 1 cut(s) 37
HapII CCGG 3 cut(s) 17, 55, 422
HhaI GCGC 1 cut(s) 54
Hin1I GRCGYC 1 cut(s) 52
Hin1II CATG 3 cut(s) 64, 283, 326
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 3 cut(s) 97, 208, 313
HpaII CCGG 3 cut(s) 17, 55, 422
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 4 cut(s) 76, 96, 172, 188
Hpy188III TCNNGA 2 cut(s) 119, 263
Hpy8I GTNNAC 4 cut(s) 76, 96, 172, 188
HpyAV CCTTC 1 cut(s) 116
HpyCH4III ACNGT 3 cut(s) 377, 407, 434
HpyCH4IV ACGT 2 cut(s) 168, 268
HpyCH4V TGCA 2 cut(s) 329, 513
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 99, 473
HpySE526I ACGT 2 cut(s) 168, 268
Hsp92I GRCGYC 1 cut(s) 52
Hsp92II CATG 3 cut(s) 64, 283, 326
HspAI GCGC 1 cut(s) 52
KasI GGCGCC 1 cut(s) 51
Kzo9I GATC 1 cut(s) 127
LmnI GCTCC 4 cut(s) 9, 153, 161, 272
LpnPI CCDG 7 cut(s) 30, 68, 73, 282, 295, 402, 435
Lsp1109I GCAGC 4 cut(s) 25, 211, 313, 341
MaeI CTAG 2 cut(s) 179, 288
MaeII ACGT 2 cut(s) 168, 268
MaeIII GTNAC 2 cut(s) 236, 434
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 4 cut(s) 206, 470, 478, 491
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 1 cut(s) 523
Mly113I GGCGCC 1 cut(s) 52
MlyI GAGTC 3 cut(s) 91, 202, 307
MnlI CCTC 5 cut(s) 222, 227, 304, 327, 456
MseI TTAA 1 cut(s) 141
MspI CCGG 3 cut(s) 17, 55, 422
MwoI GCNNNNNNNGC 1 cut(s) 10
NarI GGCGCC 1 cut(s) 52
NcoI CCATGG 1 cut(s) 60
NdeII GATC 1 cut(s) 127
NlaIII CATG 3 cut(s) 64, 283, 326
NlaIV GGNNCC 2 cut(s) 53, 274
NmuCI GTSAC 2 cut(s) 236, 434
PkrI GCNGC 4 cut(s) 15, 226, 328, 331
PleI GAGTC 3 cut(s) 91, 202, 307
PluTI GGCGCC 1 cut(s) 55
PpsI GAGTC 3 cut(s) 91, 202, 307
Psp124BI GAGCTC 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 53, 274
PspPI GGNCC 2 cut(s) 57, 188
PstI CTGCAG 1 cut(s) 331
RsaI GTAC 1 cut(s) 431
RsaNI GTAC 1 cut(s) 430
SacI GAGCTC 1 cut(s) 150
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 4 cut(s) 14, 225, 327, 330
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 2 cut(s) 57, 188
ScaI AGTACT 1 cut(s) 431
SchI GAGTC 3 cut(s) 91, 202, 307
SduI GDGCHC 1 cut(s) 150
SfcI CTRYAG 1 cut(s) 327
SfoI GGCGCC 1 cut(s) 53
SinI GGWCC 2 cut(s) 57, 188
Sse9I AATT 1 cut(s) 523
SsiI CCGC 1 cut(s) 419
SspDI GGCGCC 1 cut(s) 51
SspMI CTAG 2 cut(s) 179, 288
SstI GAGCTC 1 cut(s) 150
StyI CCWWGG 2 cut(s) 60, 157
TaaI ACNGT 3 cut(s) 377, 407, 434
TaiI ACGT 2 cut(s) 171, 271
TaqI TCGA 1 cut(s) 243
TasI AATT 1 cut(s) 523
TatI WGTACW 1 cut(s) 429
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 1 cut(s) 481
TseFI GTSAC 2 cut(s) 236, 434
TseI GCWGC 4 cut(s) 13, 224, 326, 329
Tsp45I GTSAC 2 cut(s) 236, 434
TspDTI ATGAA 1 cut(s) 471
TspGWI ACGGA 1 cut(s) 355
TspRI CASTG 1 cut(s) 481
VpaK11BI GGWCC 2 cut(s) 57, 188
XspI CTAG 2 cut(s) 179, 288
ZrmI AGTACT 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.