Rorug02G0476700

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
60801126 .. 60807684
6559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0476700.1

Sequence Viewer

Length: 1212 bp
ATGGAGTTTGCAAGCGACGAAGATGATGTTGCTGTAGCAGATGTGGCAGCTCCTTACTGGGAACGGCCAGTAGGACCCACTTGGTGGTGTCACGTAGCTGCTGGTCATCCATGCGTCAATTCATGGCTGAGTACTGCTCAATGGCTGCATCCTGCTGTCAGTATTGCTTTGCGAGATGAAAGTAGGCTGATAAGTGATCGAATGAGGCACCTTCTGTATGAGGTTCCTGTAAGGGTTGCTAGTGGACTATTATTTGAGCTCCTCGGCCAGTCAGCAGGTGATCCATATGCTGATGAAGATGACATTCCCATTGTTCTTCGATCATGGCAGGCACAGAATTTTCTAGTATCAGCATTGCATGTTAAAAGTTCTGCCCAAAACATTAATGTGTTGGGAATAGTAGAAGTCCAGGAGCTGCTTGCTGCTGAGGGCATTACGATGCCACAAACTATTCATGAAGTCATAGCACATTTAGCCTGCCGGCTTGCATGTTGGGATGATAGGTTATTTCGCAAATCCATATTTGGGGAGGCAGATGAACTTGAACTGAAGTTTATGAACAGGAGAACCCATGAAGATATGCATCTGTTCAGTATAATATTGAACCAAGAAATCCGAAGGTTATCAACCCAGGTTATAAGAGTGAAGTGGTCGTTACATGCAAGAGAAGAAATTGTGTTTGAGCTTCTTCAGCACTTGAGAGGGGATGCCACAAGGCAGTTGCTAGAACGAATAAGAAAGAGTACAAGAGAGATGATAGAAGAGCAAGAAGCAGTTCGTGGTCGCTTGTTTACTATTCAAGATGTGATGCAGAGCACTGTTCGTGCATGGTTACAGGACAGAAGCCTAACAGTGCAACATAATTTGGGAGTTTTTGGAGGTTGTGGCCTTGTCCTTTCTATCATTACTGGACTTTTTGGGATCAATGTTGATGGAATACCTGGAGCTTCAGGAACACCATTCGCATTTGGTCTATTTTCTGCCGCTCTGGTCTTCTTGGGGGTTGTACTAATTGGAATTGGATTCGTTTACCTCGGGTTAAAGAAACCTATTGTTGAAGAGGATGTTGAAGTTAGAAAACTAGAGCTCCAAGAGCTGGTTAAGTTGTTTCAGCAGGACGCAGAGTCTCATGCACAAGTACGAAAAACTGTTCCCAGAACCAACCCAACTGCTCGACTCCCCAATGGTGCAGGTTATGTTCTCATCAGTTGA

Protein Analysis

403

Amino Acids

45.24

Weight (kDa)

5.66

Isoelectric Point (pI)

38.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CorA PF01544 203 - 336 9.5e-09 CorA-like Mg2+ transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 638
AarI CACCTGC 1 cut(s) 266
Acc36I ACCTGC 2 cut(s) 266, 1181
AccB1I GGYRCC 1 cut(s) 207
AccB7I CCANNNNNTGG 2 cut(s) 84, 1096
AccBSI CCGCTC 1 cut(s) 986
AciI CCGC 1 cut(s) 984
AclWI GGATC 2 cut(s) 275, 929
AcoI YGGCCR 2 cut(s) 65, 265
AcsI RAATTY 1 cut(s) 337
AcuI CTGAAG 3 cut(s) 569, 674, 933
AdeI CACNNNGTG 1 cut(s) 84
AfaI GTAC 4 cut(s) 133, 745, 1008, 1140
AfiI CCNNNNNNNGG 3 cut(s) 84, 525, 1096
AgsI TTSAA 5 cut(s) 545, 604, 800, 1058, 1070
AhdI GACNNNNNGTC 1 cut(s) 1123
AjnI CCWGG 3 cut(s) 408, 630, 940
AluBI AGCT 8 cut(s) 50, 98, 259, 415, 685, 947, 1087, 1096
AluI AGCT 8 cut(s) 50, 98, 259, 415, 685, 947, 1087, 1096
Alw21I GWGCWC 3 cut(s) 261, 818, 1089
Alw26I GTCTC 1 cut(s) 1131
AlwI GGATC 2 cut(s) 275, 929
AlwNI CAGNNNCTG 1 cut(s) 415
Ama87I CYCGRG 1 cut(s) 1034
AoxI GGCC 3 cut(s) 65, 265, 886
ApeKI GCWGC 5 cut(s) 47, 98, 145, 415, 422
ApoI RAATTY 1 cut(s) 337
AseI ATTAAT 1 cut(s) 384
Asp700I GAANNNNTTC 1 cut(s) 774
AspS9I GGNCC 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 290
AvaI CYCGRG 1 cut(s) 1034
AvaII GGWCC 1 cut(s) 74
BanI GGYRCC 1 cut(s) 207
BanII GRGCYC 2 cut(s) 261, 1089
BbsI GAAGAC 1 cut(s) 985
Bbv12I GWGCWC 3 cut(s) 261, 818, 1089
BbvCI CCTCAGC 1 cut(s) 426
BbvI GCAGC 5 cut(s) 59, 85, 132, 402, 409
BccI CCATC 1 cut(s) 926
BceAI ACGGC 1 cut(s) 80
BciT130I CCWGG 3 cut(s) 410, 632, 942
BcoDI GTCTC 1 cut(s) 1131
BfaI CTAG 4 cut(s) 240, 344, 725, 1082
BfmI CTRYAG 1 cut(s) 33
BfuAI ACCTGC 2 cut(s) 266, 1181
BisI GCNGC 6 cut(s) 48, 99, 146, 416, 423, 984
BlsI GCNGC 6 cut(s) 49, 100, 147, 417, 424, 985
BmcAI AGTACT 1 cut(s) 133
Bme1390I CCNGG 3 cut(s) 410, 632, 942
Bme18I GGWCC 1 cut(s) 74
BmeRI GACNNNNNGTC 1 cut(s) 1123
BmeT110I CYCGRG 1 cut(s) 1034
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 3 cut(s) 76, 209, 225
BmrFI CCNGG 3 cut(s) 410, 632, 942
BmrI ACTGGG 1 cut(s) 67
BmsI GCATC 5 cut(s) 157, 429, 592, 697, 798
BmuI ACTGGG 1 cut(s) 67
BpiI GAAGAC 1 cut(s) 985
BplI GAGNNNNNCTC 2 cut(s) 121, 153
BpmI CTGGAG 1 cut(s) 963
Bpu10I CCTNAGC 1 cut(s) 426
BpuEI CTTGAG 1 cut(s) 718
BsaAI YACGTR 1 cut(s) 94
BsaBI GATNNNNATC 1 cut(s) 582
BsaJI CCNNGG 3 cut(s) 262, 630, 1033
BsaXI ACNNNNNCTCC 2 cut(s) 1071, 1101
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 525, 1096
Bse118I RCCGGY 1 cut(s) 480
Bse1I ACTGG 4 cut(s) 62, 68, 268, 913
Bse3DI GCAATG 1 cut(s) 353
Bse8I GATNNNNATC 1 cut(s) 582
BseBI CCWGG 3 cut(s) 410, 632, 942
BseDI CCNNGG 3 cut(s) 262, 630, 1033
BseGI GGATG 5 cut(s) 106, 148, 502, 712, 1069
BseJI GATNNNNATC 1 cut(s) 582
BseLI CCNNNNNNNGG 3 cut(s) 84, 525, 1096
BseMI GCAATG 1 cut(s) 353
BseMII CTCAG 2 cut(s) 119, 417
BseNI ACTGG 4 cut(s) 62, 68, 268, 913
BseRI GAGGAG 1 cut(s) 251
BseXI GCAGC 5 cut(s) 59, 85, 132, 402, 409
BsgI GTGCAG 1 cut(s) 1209
BshFI GGCC 3 cut(s) 67, 267, 888
BshNI GGYRCC 1 cut(s) 207
BsiHKAI GWGCWC 3 cut(s) 261, 818, 1089
BsiHKCI CYCGRG 1 cut(s) 1034
BsiSI CCGG 1 cut(s) 481
BslI CCNNNNNNNGG 3 cut(s) 84, 525, 1096
BsmAI GTCTC 1 cut(s) 1131
BsnI GGCC 3 cut(s) 67, 267, 888
BsoBI CYCGRG 1 cut(s) 1034
Bsp1286I GDGCHC 3 cut(s) 261, 818, 1089
Bsp143I GATC 4 cut(s) 196, 280, 320, 921
BspACI CCGC 1 cut(s) 984
BspANI GGCC 3 cut(s) 67, 267, 888
BspCNI CTCAG 2 cut(s) 120, 418
BspHI TCATGA 1 cut(s) 454
BspLI GGNNCC 3 cut(s) 76, 209, 225
BspMI ACCTGC 2 cut(s) 266, 1181
BspPI GGATC 2 cut(s) 275, 929
BspQI GCTCTTC 1 cut(s) 756
BspT107I GGYRCC 1 cut(s) 207
BsrBI CCGCTC 1 cut(s) 986
BsrDI GCAATG 1 cut(s) 353
BsrFI RCCGGY 1 cut(s) 480
BsrI ACTGG 4 cut(s) 62, 68, 268, 913
BssAI RCCGGY 1 cut(s) 480
BssECI CCNNGG 3 cut(s) 262, 630, 1033
BssMI GATC 4 cut(s) 196, 280, 320, 921
Bst2UI CCWGG 3 cut(s) 410, 632, 942
Bst4CI ACNGT 3 cut(s) 820, 853, 1150
Bst6I CTCTTC 2 cut(s) 756, 1053
BstBAI YACGTR 1 cut(s) 94
BstC8I GCNNGC 6 cut(s) 13, 330, 420, 478, 482, 486
BstDEI CTNAG 2 cut(s) 128, 426
BstF5I GGATG 5 cut(s) 106, 148, 502, 712, 1069
BstKTI GATC 4 cut(s) 199, 283, 323, 924
BstMAI GTCTC 1 cut(s) 1131
BstMBI GATC 4 cut(s) 196, 280, 320, 921
BstMWI GCNNNNNNNGC 4 cut(s) 44, 473, 691, 1093
BstNI CCWGG 3 cut(s) 410, 632, 942
BstNSI RCATGY 3 cut(s) 362, 492, 662
BstSCI CCNGG 3 cut(s) 408, 630, 940
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 5 cut(s) 59, 85, 132, 402, 409
BstV2I GAAGAC 1 cut(s) 985
BsuRI GGCC 3 cut(s) 67, 267, 888
BtsCI GGATG 5 cut(s) 106, 148, 502, 712, 1069
BtsIMutI CAGTG 2 cut(s) 816, 858
BveI ACCTGC 2 cut(s) 266, 1181
Cac8I GCNNGC 6 cut(s) 13, 330, 420, 478, 482, 486
CaiI CAGNNNCTG 1 cut(s) 415
CciI TCATGA 1 cut(s) 454
Cfr10I RCCGGY 1 cut(s) 480
Cfr13I GGNCC 1 cut(s) 74
CseI GACGC 2 cut(s) 103, 1127
Csp6I GTAC 4 cut(s) 132, 744, 1007, 1139
CviQI GTAC 4 cut(s) 132, 744, 1007, 1139
DdeI CTNAG 2 cut(s) 128, 426
DpnI GATC 4 cut(s) 198, 282, 322, 923
DpnII GATC 4 cut(s) 196, 280, 320, 921
DraIII CACNNNGTG 1 cut(s) 84
DriI GACNNNNNGTC 1 cut(s) 1123
EaeI YGGCCR 2 cut(s) 65, 265
Eam1104I CTCTTC 2 cut(s) 756, 1053
Eam1105I GACNNNNNGTC 1 cut(s) 1123
EarI CTCTTC 2 cut(s) 756, 1053
Ecl136II GAGCTC 2 cut(s) 259, 1087
Eco24I GRGCYC 2 cut(s) 261, 1089
Eco47I GGWCC 1 cut(s) 74
Eco53kI GAGCTC 2 cut(s) 259, 1087
Eco57I CTGAAG 3 cut(s) 569, 674, 933
Eco88I CYCGRG 1 cut(s) 1034
EcoICRI GAGCTC 2 cut(s) 259, 1087
EcoO109I RGGNCCY 1 cut(s) 74
EcoRII CCWGG 3 cut(s) 408, 630, 940
EcoT22I ATGCAT 1 cut(s) 585
EcoT38I GRGCYC 2 cut(s) 261, 1089
FauNDI CATATG 1 cut(s) 286
Fnu4HI GCNGC 6 cut(s) 48, 99, 146, 416, 423, 984
FokI GGATG 5 cut(s) 93, 135, 509, 719, 1076
FriOI GRGCYC 2 cut(s) 261, 1089
Fsp4HI GCNGC 6 cut(s) 48, 99, 146, 416, 423, 984
FspBI CTAG 4 cut(s) 240, 344, 725, 1082
GluI GCNGC 6 cut(s) 48, 99, 146, 416, 423, 984
GsuI CTGGAG 1 cut(s) 963
HaeIII GGCC 3 cut(s) 67, 267, 888
HapII CCGG 1 cut(s) 481
HgaI GACGC 2 cut(s) 103, 1127
HinfI GANTC 3 cut(s) 1023, 1124, 1176
HpaII CCGG 1 cut(s) 481
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 3 cut(s) 245, 792, 1030
Hpy188I TCNGA 1 cut(s) 617
Hpy188III TCNNGA 3 cut(s) 455, 800, 951
Hpy8I GTNNAC 3 cut(s) 245, 792, 1030
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 221, 612
HpyCH4III ACNGT 3 cut(s) 820, 853, 1150
HpyCH4IV ACGT 1 cut(s) 93
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 473, 691, 1093
HpyF3I CTNAG 2 cut(s) 128, 426
HpySE526I ACGT 1 cut(s) 93
KroI GCCGGC 1 cut(s) 480
KroNI GCCGGC 1 cut(s) 482
Kzo9I GATC 4 cut(s) 196, 280, 320, 921
LguI GCTCTTC 1 cut(s) 756
LmnI GCTCC 5 cut(s) 55, 264, 412, 944, 1092
Lsp1109I GCAGC 5 cut(s) 59, 85, 132, 402, 409
LweI GCATC 5 cut(s) 157, 429, 592, 697, 798
MaeI CTAG 4 cut(s) 240, 344, 725, 1082
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 3 cut(s) 89, 654, 831
MalI GATC 4 cut(s) 198, 282, 322, 923
MbiI CCGCTC 1 cut(s) 986
MboI GATC 4 cut(s) 196, 280, 320, 921
MboII GAAGA 9 cut(s) 32, 308, 308, 587, 680, 680, 773, 985, 1070
MhlI GDGCHC 3 cut(s) 261, 818, 1089
MluCI AATT 6 cut(s) 118, 337, 672, 862, 1011, 1017
MlyI GAGTC 2 cut(s) 1133, 1170
MnlI CCTC 9 cut(s) 198, 214, 272, 421, 523, 695, 872, 1043, 1054
Mph1103I ATGCAT 1 cut(s) 585
MroNI GCCGGC 1 cut(s) 480
MroXI GAANNNNTTC 1 cut(s) 774
MseI TTAA 4 cut(s) 363, 384, 1040, 1101
MslI CAYNNNNRTG 2 cut(s) 386, 437
MspI CCGG 1 cut(s) 481
MspR9I CCNGG 3 cut(s) 410, 632, 942
MvaI CCWGG 3 cut(s) 410, 632, 942
MwoI GCNNNNNNNGC 4 cut(s) 44, 473, 691, 1093
NaeI GCCGGC 1 cut(s) 482
NdeI CATATG 1 cut(s) 286
NdeII GATC 4 cut(s) 196, 280, 320, 921
NgoMIV GCCGGC 1 cut(s) 480
NlaIV GGNNCC 3 cut(s) 76, 209, 225
NmeAIII GCCGAG 1 cut(s) 243
NmuCI GTSAC 1 cut(s) 89
NsiI ATGCAT 1 cut(s) 585
NspI RCATGY 3 cut(s) 362, 492, 662
PagI TCATGA 1 cut(s) 454
PaqCI CACCTGC 1 cut(s) 266
PciSI GCTCTTC 1 cut(s) 756
PdiI GCCGGC 1 cut(s) 482
PdmI GAANNNNTTC 1 cut(s) 774
PfeI GAWTC 1 cut(s) 1023
PflMI CCANNNNNTGG 2 cut(s) 84, 1096
PfoI TCCNGGA 1 cut(s) 408
PkrI GCNGC 6 cut(s) 49, 100, 147, 417, 424, 985
PleI GAGTC 2 cut(s) 1132, 1170
PpsI GAGTC 2 cut(s) 1132, 1170
Ppu21I YACGTR 1 cut(s) 94
PpuMI RGGWCCY 1 cut(s) 74
PshBI ATTAAT 1 cut(s) 384
PsiI TTATAA 1 cut(s) 638
Psp124BI GAGCTC 2 cut(s) 261, 1089
Psp5II RGGWCCY 1 cut(s) 74
Psp6I CCWGG 3 cut(s) 408, 630, 940
PspGI CCWGG 3 cut(s) 408, 630, 940
PspN4I GGNNCC 3 cut(s) 76, 209, 225
PspPI GGNCC 1 cut(s) 74
PspPPI RGGWCCY 1 cut(s) 74
PstNI CAGNNNCTG 1 cut(s) 415
RsaI GTAC 4 cut(s) 133, 745, 1008, 1140
RsaNI GTAC 4 cut(s) 132, 744, 1007, 1139
RseI CAYNNNNRTG 2 cut(s) 386, 437
SacI GAGCTC 2 cut(s) 261, 1089
SapI GCTCTTC 1 cut(s) 756
SaqAI TTAA 4 cut(s) 363, 384, 1040, 1101
SatI GCNGC 6 cut(s) 48, 99, 146, 416, 423, 984
Sau3AI GATC 4 cut(s) 196, 280, 320, 921
Sau96I GGNCC 1 cut(s) 74
ScaI AGTACT 1 cut(s) 133
SchI GAGTC 2 cut(s) 1133, 1170
ScrFI CCNGG 3 cut(s) 410, 632, 942
SduI GDGCHC 3 cut(s) 261, 818, 1089
SfaNI GCATC 5 cut(s) 157, 429, 592, 697, 798
SfcI CTRYAG 1 cut(s) 33
SinI GGWCC 1 cut(s) 74
SmiMI CAYNNNNRTG 2 cut(s) 386, 437
SmlI CTYRAG 1 cut(s) 697
SmoI CTYRAG 1 cut(s) 697
Sse9I AATT 6 cut(s) 118, 337, 672, 862, 1011, 1017
SsiI CCGC 1 cut(s) 984
SspI AATATT 1 cut(s) 600
SspMI CTAG 4 cut(s) 240, 344, 725, 1082
SstI GAGCTC 2 cut(s) 261, 1089
StyD4I CCNGG 3 cut(s) 408, 630, 940
TaaI ACNGT 3 cut(s) 820, 853, 1150
TaiI ACGT 1 cut(s) 96
TaqI TCGA 3 cut(s) 199, 319, 1174
TasI AATT 6 cut(s) 118, 337, 672, 862, 1011, 1017
TatI WGTACW 3 cut(s) 131, 743, 1006
TauI GCSGC 1 cut(s) 986
TfiI GAWTC 1 cut(s) 1023
Tru1I TTAA 4 cut(s) 363, 384, 1040, 1101
Tru9I TTAA 4 cut(s) 363, 384, 1040, 1101
TscAI CASTG 2 cut(s) 823, 858
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 5 cut(s) 47, 98, 145, 415, 422
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 8 cut(s) 111, 192, 309, 443, 471, 552, 572, 588
TspRI CASTG 2 cut(s) 823, 858
Van91I CCANNNNNTGG 2 cut(s) 84, 1096
VpaK11BI GGWCC 1 cut(s) 74
VspI ATTAAT 1 cut(s) 384
XapI RAATTY 1 cut(s) 337
XceI RCATGY 3 cut(s) 362, 492, 662
XmnI GAANNNNTTC 1 cut(s) 774
XspI CTAG 4 cut(s) 240, 344, 725, 1082
ZrmI AGTACT 1 cut(s) 133
Zsp2I ATGCAT 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.