Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001481

Physical Location & Seq

Genomic Coordinates Forward (+)

21960716 .. 21964750

Gene Structure 4035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G217600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

ATGGCTTCTTCGCCAAATGACATCCACCAGCCTCTGCTACAATCCTATCCACCACCTCCCACCCTAACCACAAAACATGATGATCTTCCTGATCTTCATCTTCATCATGATCTCCACTCAAGCAACGAGCTTGAAAGAGTGCTTTCTGACACAAACAGGCCATTTTTGGAGCGTCTCAAACCGGCTCTATGGATTGAGTCCAAGCTCCTTTTCTACCTCGCTGCGCCGGCCGTCATCGTTTACATGATCAACTATGTCATGAGCATGTCCACCCAAATTTTCGCAGGCCACCTTGGTAATCTTGAGCTGGCCGCTGCCTCCCTCGGCAACAATGGCATCCTAATTTTCTCCTATGGACTCTTATTAGGCATGGGGAGCGCGGTGGAGACACTTTGTGGGCAAGCCTATGGTGCCCACAAGTATGAAATGCTAGGGATATATCTACAAAGGTCAACCATACTCTTAACTTTGGGTGGTGTGCTCCTCACCATCGTCTACATCTTCTCCAGACCAATCTTGATCCTTCTAGGTCAATCTCCAAGCATTGCATCTGCGGCGGCAATCTACGTGTACGGCTTGATCCCTCAAATCTTTTCCTTTGCTGTCAACTTCCCGATCCAAAAGTTTCTGCAAGCTCAAAGCATAGTGGCCCCAAGCGCCTATATCTCTGCATCAACCCTAGTTTTGCACCTTGTGCTCAGCTGGGTTGTGGTGTACAAGATGGGGCTTGGCTTGCTGGGTGCTGCATTGGTGCTCAGCCTTTCATGGTGGATCACTGTGTTGGCGCAGTTTGTGTACATTGTCAAGAGTGAGAGGTGCAAGAACACATGGCGTGGGTTTAGTTGGCAGGCCTTTAGTGGGTTGCTAGGGTTTTTCAAATTATCTGTGGCTTCTGCGGTGATGCTTTGCCTTGAAACTTGGTACTTTCAGATTCTTGTTTTGCTTGCTGGGTTGCTGCCAAACCCTGAGTTGGCTTTGGACTCTCTCTCAATCTGCACAACAATATCTGGTTGGGTCTTCATGATCTCAGTTGGGTTAAATGCAGCTGCAAGTGTGAGAGTGAGCAATGAGCTTGGAGCTGGAAATCCCAAGTCCACAGCATTTTCTGTGGTGGTGGTGACAACAGTCTCTTTCCTCATCTCAATTGTGGCAGCAATAATTGTTCTTATATGGCGGGATACCATAAGCTATGCCTTCACAGAGGGTGAAGCTGTGGCTGCTGCTGTATCTGATCTCTGCCCATTTCTTGCCCTCACCCTCCTCCTTAATGGCATCCAGCCAGTATTGTCTGGTGTTGCTGTTGGGTGTGGATGGCAAGCTTTTGTTGCGTATGTGAATGTGGGGTGTTATTACTTGGTTGGAGTACCATTTGGTGCGCTTCTAGGATTTTACTTCAAATGTGGTGCTAAGGGAATATGGTTGGGGATGATGGCTGGCACCTTGATGCAAACAATCATTCTGATATGGGTGACCTATCGGACCGATTGGAAGAAAGAGGTGGTAGAAGCAGCTAAAAGGTTGAATAAGTGGGGGGAGGTGAAGGAGACACTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0016020 GO:0022857 GO:0031090 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

519

Amino Acids

56.44

Weight (kDa)

8.02

Isoelectric Point (pI)

29.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21690
fragaria_vesca	FvH4_3g02250 FvH4_3g02250 FvH4_6g43220 FvH4_6g43220
malus_domestica	MD05G1344500.v1.1 MD05G1344900.v1.1 MD09G1108500.v1.1 MD17G1096400.v1.1
prunus_persica	Prupe.3G217600_v2.0.a1 Prupe.3G217600_v2.0.a1 Prupe.3G217600_v2.0.a1 Prupe.4G021900_v2.0.a1
pyrus_communis	pycom05g31380 pycom09g03100 pycom17g09250
rosa_chinensis	RchiOBHm_Chr2g0159351 RchiOBHm_Chr2g0159471 RchiOBHm_Chr5g0003321 RchiOBHm_Chr5g0003371
rosa_laevigata	RLG00000021157 RLG00000021161 RLG00000031126 RLG00000031130
rosa_multiflora	Rmu_sc0004800.1_g000007 Rmu_sc0006842.1_g000002 Rmu_sc0007710.1_g000003 Rmu_sc0010917.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072650
rosa_rugosa	Rorug02G0475900 Rorug02G0476200 Rorug02G0476300 Rorug02G0476500 Rorug02G0476600 Rorug02G0476700 Rorug04G0402700.1 Rorug04G0402800
rosa_samantha	Rh2AG542800 Rh2AG543100 Rh2BG555300 Rh2BG555800 Rh2DG564900 Rh2DG565200 Rh5AG028800 Rh5BG028900 Rh5DG029400
rosa_wichuraiana	Rw2G044870 Rw2G044920 Rw5G002370 Rw5G002680 Rw5G002730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	410, 1436
AccI	GTMKAC	1 cut(s)	495
AccII	CGCG	1 cut(s)	380
AciI	CCGC	6 cut(s)	312, 380, 554, 557, 896, 1174
AclWI	GGATC	4 cut(s)	514, 574, 610, 779
AcoI	YGGCCR	2 cut(s)	228, 309
AcsI	RAATTY	1 cut(s)	276
AdeI	CACNNNGTG	2 cut(s)	395, 694
AfaI	GTAC	5 cut(s)	572, 716, 797, 923, 1365
AfiI	CCNNNNNNNGG	2 cut(s)	858, 970
AflIII	ACRYGT	1 cut(s)	567
AgsI	TTSAA	5 cut(s)	134, 877, 914, 1396, 1522
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
Alw21I	GWGCWC	3 cut(s)	483, 699, 756
Alw26I	GTCTC	4 cut(s)	179, 380, 1132, 1538
AlwI	GGATC	4 cut(s)	514, 574, 610, 779
AlwNI	CAGNNNCTG	1 cut(s)	34
AoxI	GGCC	6 cut(s)	158, 228, 286, 309, 648, 849
ApoI	RAATTY	1 cut(s)	276
AspLEI	GCGC	5 cut(s)	226, 380, 659, 787, 1378
AspS9I	GGNCC	2 cut(s)	649, 1479
AsuHPI	GGTGA	7 cut(s)	478, 910, 1129, 1217, 1246, 1480, 1549
AvaII	GGWCC	1 cut(s)	1479
BaeGI	GKGCMC	1 cut(s)	415
BanI	GGYRCC	2 cut(s)	410, 1436
BbsI	GAAGAC	1 cut(s)	1009
Bbv12I	GWGCWC	3 cut(s)	483, 699, 756
BccI	CCATC	4 cut(s)	497, 715, 1305, 1423
BceAI	ACGGC	2 cut(s)	215, 589
BciVI	GTATCC	1 cut(s)	1171
BclI	TGATCA	1 cut(s)	246
BcoDI	GTCTC	4 cut(s)	179, 380, 1132, 1538
BfaI	CTAG	5 cut(s)	431, 527, 680, 866, 1382
BfoI	RGCGCY	1 cut(s)	660
BfuI	GTATCC	1 cut(s)	1171
BlpI	GCTNAGC	2 cut(s)	698, 755
Bme18I	GGWCC	1 cut(s)	1479
BmgT120I	GGNCC	2 cut(s)	649, 1479
BmiI	GGNNCC	3 cut(s)	412, 651, 1438
BmsI	GCATC	6 cut(s)	345, 557, 680, 891, 1281, 1434
BoxI	GACNNNNGTC	1 cut(s)	1124
BpiI	GAAGAC	1 cut(s)	1009
BpmI	CTGGAG	1 cut(s)	490
Bpu10I	CCTNAGC	1 cut(s)	1407
Bpu1102I	GCTNAGC	2 cut(s)	698, 755
BpuEI	CTTGAG	3 cut(s)	103, 323, 1535
BsaAI	YACGTR	1 cut(s)	568
BsaBI	GATNNNNATC	1 cut(s)	96
BsaJI	CCNNGG	2 cut(s)	292, 322
BsaXI	ACNNNNNCTCC	2 cut(s)	488, 518
Bsc4I	CCNNNNNNNGG	2 cut(s)	858, 970
Bse118I	RCCGGY	2 cut(s)	181, 226
Bse1I	ACTGG	1 cut(s)	1280
Bse3DI	GCAATG	2 cut(s)	543, 1072
Bse8I	GATNNNNATC	1 cut(s)	96
BseDI	CCNNGG	2 cut(s)	292, 322
BseGI	GGATG	5 cut(s)	21, 336, 1272, 1316, 1431
BseJI	GATNNNNATC	1 cut(s)	96
BseLI	CCNNNNNNNGG	2 cut(s)	858, 970
BseMI	GCAATG	2 cut(s)	543, 1072
BseMII	CTCAG	4 cut(s)	712, 769, 957, 1041
BseNI	ACTGG	1 cut(s)	1280
BseRI	GAGGAG	2 cut(s)	473, 1250
BseSI	GKGCMC	1 cut(s)	415
BseX3I	CGGCCG	1 cut(s)	228
BseYI	CCCAGC	3 cut(s)	702, 736, 947
BsgI	GTGCAG	1 cut(s)	979
Bsh1236I	CGCG	1 cut(s)	380
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	6 cut(s)	160, 230, 288, 311, 650, 851
BshNI	GGYRCC	2 cut(s)	410, 1436
BsiEI	CGRYCG	1 cut(s)	231
BsiHKAI	GWGCWC	3 cut(s)	483, 699, 756
BsiSI	CCGG	2 cut(s)	182, 227
BslI	CCNNNNNNNGG	2 cut(s)	858, 970
BsmAI	GTCTC	4 cut(s)	179, 380, 1132, 1538
BsmBI	CGTCTC	1 cut(s)	179
BsnI	GGCC	6 cut(s)	160, 230, 288, 311, 650, 851
Bsp1286I	GDGCHC	4 cut(s)	415, 483, 699, 756
Bsp1407I	TGTACA	2 cut(s)	714, 795
Bsp1720I	GCTNAGC	2 cut(s)	698, 755
BspACI	CCGC	6 cut(s)	312, 380, 554, 557, 896, 1174
BspANI	GGCC	6 cut(s)	160, 230, 288, 311, 650, 851
BspCNI	CTCAG	4 cut(s)	711, 768, 958, 1040
BspFNI	CGCG	1 cut(s)	380
BspHI	TCATGA	3 cut(s)	106, 258, 1020
BspLI	GGNNCC	3 cut(s)	412, 651, 1438
BspPI	GGATC	4 cut(s)	514, 574, 610, 779
BspT107I	GGYRCC	2 cut(s)	410, 1436
BsrDI	GCAATG	2 cut(s)	543, 1072
BsrFI	RCCGGY	2 cut(s)	181, 226
BsrGI	TGTACA	2 cut(s)	714, 795
BsrI	ACTGG	1 cut(s)	1280
BssAI	RCCGGY	2 cut(s)	181, 226
BssECI	CCNNGG	2 cut(s)	292, 322
BssT1I	CCWWGG	1 cut(s)	292
Bst4CI	ACNGT	2 cut(s)	778, 1126
BstAPI	GCANNNNNTGC	1 cut(s)	694
BstAUI	TGTACA	2 cut(s)	714, 795
BstBAI	YACGTR	1 cut(s)	568
BstDEI	CTNAG	5 cut(s)	698, 755, 966, 1027, 1407
BstEII	GGTNACC	1 cut(s)	1468
BstF5I	GGATG	5 cut(s)	21, 336, 1272, 1316, 1431
BstFNI	CGCG	1 cut(s)	380
BstH2I	RGCGCY	1 cut(s)	660
BstHHI	GCGC	5 cut(s)	226, 380, 659, 787, 1378
BstMAI	GTCTC	4 cut(s)	179, 380, 1132, 1538
BstMCI	CGRYCG	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	268
BstPAI	GACNNNNGTC	1 cut(s)	1124
BstPI	GGTNACC	1 cut(s)	1468
BstSLI	GKGCMC	1 cut(s)	415
BstUI	CGCG	1 cut(s)	380
BstV2I	GAAGAC	1 cut(s)	1009
BstZI	CGGCCG	1 cut(s)	228
BsuI	GTATCC	1 cut(s)	1171
BsuRI	GGCC	6 cut(s)	160, 230, 288, 311, 650, 851
BtsCI	GGATG	5 cut(s)	21, 336, 1272, 1316, 1431
BtsIMutI	CAGTG	1 cut(s)	774
CaiI	CAGNNNCTG	1 cut(s)	34
CciI	TCATGA	3 cut(s)	106, 258, 1020
CfoI	GCGC	5 cut(s)	226, 380, 659, 787, 1378
Cfr10I	RCCGGY	2 cut(s)	181, 226
Cfr13I	GGNCC	2 cut(s)	649, 1479
CpoI	CGGWCCG	1 cut(s)	1479
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	5 cut(s)	571, 715, 796, 922, 1364
CspI	CGGWCCG	1 cut(s)	1479
CviAII	CATG	9 cut(s)	77, 107, 244, 259, 265, 370, 765, 828, 1021
CviQI	GTAC	5 cut(s)	571, 715, 796, 922, 1364
DdeI	CTNAG	5 cut(s)	698, 755, 966, 1027, 1407
DraIII	CACNNNGTG	2 cut(s)	395, 694
EaeI	YGGCCR	2 cut(s)	228, 309
EagI	CGGCCG	1 cut(s)	228
EclXI	CGGCCG	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	292
Eco147I	AGGCCT	1 cut(s)	851
Eco47I	GGWCC	1 cut(s)	1479
Eco52I	CGGCCG	1 cut(s)	228
Eco91I	GGTNACC	1 cut(s)	1468
EcoO65I	GGTNACC	1 cut(s)	1468
EcoT14I	CCWWGG	1 cut(s)	292
ErhI	CCWWGG	1 cut(s)	292
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	9 cut(s)	80, 110, 247, 262, 268, 373, 768, 831, 1024
FatI	CATG	9 cut(s)	76, 106, 243, 258, 264, 369, 764, 827, 1020
FauI	CCCGC	1 cut(s)	1167
FbaI	TGATCA	1 cut(s)	246
FblI	GTMKAC	1 cut(s)	495
FokI	GGATG	5 cut(s)	8, 323, 1259, 1323, 1438
FspBI	CTAG	5 cut(s)	431, 527, 680, 866, 1382
GlaI	GCGC	5 cut(s)	225, 379, 658, 786, 1377
GsaI	CCCAGC	3 cut(s)	706, 740, 951
GsuI	CTGGAG	1 cut(s)	490
HaeII	RGCGCY	1 cut(s)	660
HaeIII	GGCC	6 cut(s)	160, 230, 288, 311, 650, 851
HapII	CCGG	2 cut(s)	182, 227
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	5 cut(s)	226, 380, 659, 787, 1378
Hin1II	CATG	9 cut(s)	80, 110, 247, 262, 268, 373, 768, 831, 1024
Hin6I	GCGC	5 cut(s)	224, 378, 657, 785, 1376
HinP1I	GCGC	5 cut(s)	224, 378, 657, 785, 1376
HincII	GTYRAC	2 cut(s)	453, 607
HindII	GTYRAC	2 cut(s)	453, 607
HindIII	AAGCTT	1 cut(s)	1317
HinfI	GANTC	4 cut(s)	197, 357, 931, 980
HpaII	CCGG	2 cut(s)	182, 227
HphI	GGTGA	7 cut(s)	478, 910, 1129, 1217, 1246, 1480, 1549
Hpy166II	GTNNAC	9 cut(s)	241, 270, 453, 496, 571, 607, 715, 796, 1095
Hpy188I	TCNGA	5 cut(s)	148, 930, 1231, 1461, 1479
Hpy188III	TCNNGA	9 cut(s)	89, 107, 259, 302, 507, 517, 613, 805, 1021
Hpy8I	GTNNAC	9 cut(s)	241, 270, 453, 496, 571, 607, 715, 796, 1095
HpyAV	CCTTC	3 cut(s)	533, 1204, 1534
HpyCH4III	ACNGT	2 cut(s)	778, 1126
HpyCH4IV	ACGT	1 cut(s)	567
HpyF3I	CTNAG	5 cut(s)	698, 755, 966, 1027, 1407
HpySE526I	ACGT	1 cut(s)	567
Hsp92II	CATG	9 cut(s)	80, 110, 247, 262, 268, 373, 768, 831, 1024
HspAI	GCGC	5 cut(s)	224, 378, 657, 785, 1376
KroI	GCCGGC	1 cut(s)	226
KroNI	GCCGGC	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	246
LmnI	GCTCC	5 cut(s)	169, 210, 375, 486, 1076
LweI	GCATC	6 cut(s)	345, 557, 680, 891, 1281, 1434
MaeI	CTAG	5 cut(s)	431, 527, 680, 866, 1382
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	2 cut(s)	1117, 1468
MboII	GAAGA	6 cut(s)	77, 86, 92, 493, 1009, 1501
MfeI	CAATTG	1 cut(s)	1143
MhlI	GDGCHC	4 cut(s)	415, 483, 699, 756
MluCI	AATT	5 cut(s)	276, 342, 878, 1143, 1158
MlyI	GAGTC	3 cut(s)	206, 351, 974
MmeI	TCCRAC	1 cut(s)	1339
MroNI	GCCGGC	1 cut(s)	226
MseI	TTAA	3 cut(s)	464, 1037, 1266
MslI	CAYNNNNRTG	3 cut(s)	263, 420, 1442
MspA1I	CMGCKG	3 cut(s)	314, 702, 1046
MspI	CCGG	2 cut(s)	182, 227
MunI	CAATTG	1 cut(s)	1143
MvnI	CGCG	1 cut(s)	380
NaeI	GCCGGC	1 cut(s)	228
NgoMIV	GCCGGC	1 cut(s)	226
NlaIII	CATG	9 cut(s)	80, 110, 247, 262, 268, 373, 768, 831, 1024
NlaIV	GGNNCC	3 cut(s)	412, 651, 1438
NmeAIII	GCCGAG	1 cut(s)	303
NmuCI	GTSAC	2 cut(s)	1117, 1468
NspI	RCATGY	1 cut(s)	268
PagI	TCATGA	3 cut(s)	106, 258, 1020
PceI	AGGCCT	1 cut(s)	851
PdiI	GCCGGC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	931
PleI	GAGTC	3 cut(s)	205, 351, 974
PpsI	GAGTC	3 cut(s)	205, 351, 974
Ppu21I	YACGTR	1 cut(s)	568
PshAI	GACNNNNGTC	1 cut(s)	1124
PspEI	GGTNACC	1 cut(s)	1468
PspFI	CCCAGC	3 cut(s)	702, 736, 947
PspN4I	GGNNCC	3 cut(s)	412, 651, 1438
PspPI	GGNCC	2 cut(s)	649, 1479
PstNI	CAGNNNCTG	1 cut(s)	34
PvuII	CAGCTG	2 cut(s)	702, 1046
RsaI	GTAC	5 cut(s)	572, 716, 797, 923, 1365
RsaNI	GTAC	5 cut(s)	571, 715, 796, 922, 1364
RseI	CAYNNNNRTG	3 cut(s)	263, 420, 1442
Rsr2I	CGGWCCG	1 cut(s)	1479
RsrII	CGGWCCG	1 cut(s)	1479
SaqAI	TTAA	3 cut(s)	464, 1037, 1266
Sau96I	GGNCC	2 cut(s)	649, 1479
SchI	GAGTC	3 cut(s)	206, 351, 974
SduI	GDGCHC	4 cut(s)	415, 483, 699, 756
SfaNI	GCATC	6 cut(s)	345, 557, 680, 891, 1281, 1434
SinI	GGWCC	1 cut(s)	1479
SmiMI	CAYNNNNRTG	3 cut(s)	263, 420, 1442
SmlI	CTYRAG	3 cut(s)	118, 302, 1550
SmoI	CTYRAG	3 cut(s)	118, 302, 1550
Sse9I	AATT	5 cut(s)	276, 342, 878, 1143, 1158
SseBI	AGGCCT	1 cut(s)	851
SsiI	CCGC	6 cut(s)	312, 380, 554, 557, 896, 1174
SspMI	CTAG	5 cut(s)	431, 527, 680, 866, 1382
StuI	AGGCCT	1 cut(s)	851
StyI	CCWWGG	1 cut(s)	292
TaaI	ACNGT	2 cut(s)	778, 1126
TaiI	ACGT	1 cut(s)	570
TaqII	GACCGA	1 cut(s)	1496
TasI	AATT	5 cut(s)	276, 342, 878, 1143, 1158
TatI	WGTACW	2 cut(s)	714, 795
TauI	GCSGC	3 cut(s)	314, 557, 560
TfiI	GAWTC	1 cut(s)	931
Tru1I	TTAA	3 cut(s)	464, 1037, 1266
Tru9I	TTAA	3 cut(s)	464, 1037, 1266
TscAI	CASTG	1 cut(s)	781
TseFI	GTSAC	2 cut(s)	1117, 1468
Tsp45I	GTSAC	2 cut(s)	1117, 1468
TspDTI	ATGAA	5 cut(s)	86, 92, 438, 753, 1009
TspRI	CASTG	1 cut(s)	781
VpaK11BI	GGWCC	1 cut(s)	1479
XapI	RAATTY	1 cut(s)	276
XceI	RCATGY	1 cut(s)	268
XmiI	GTMKAC	1 cut(s)	495
XspI	CTAG	5 cut(s)	431, 527, 680, 866, 1382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.