Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001481

Physical Location & Seq

Genomic Coordinates Reverse (-)

60790669 .. 60791649

Gene Structure 981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0476500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGAGTTTGATAAAACTACTGATAATTATGAGGTTGCTCATGGTGATTCTCTGATCATTGCATACTGCGTGTATGAGAAAATGGCAGGAGGTGCGGATCTAACAGGACCTAATGTTGTGTCTAAAACTTCAGTCGACCGAAGCCAAGATGCAGATAAAGGTAATAATCACCACAGGCCTGGCATTGATGCATTGCTTATGGCACCAAAAATACCAAAGCCAGTGCATCCGGTTTCCTCAGCATCCGAGGGGGAGACAATCCGGCGACCTCGTGGTAGGCCGGCGGGTTCTAAAAACAAGCCAAAGCCACCTATCATTGTCACCCGCGATAGTGCTAATGCGCTTCGTGCGCATGCTATGGAAGTGAGTTCAGGCTGTGATGTGAGTGAAAGTTTAACCAACTTTGCAAGGAGGAAACAAAGAGGCATTTGCATACTGAGTGGTAGTGGTTGTGTAACCAATGTCACACTGCGGCAACCAGCTTCCTCCGGAGCCATTGTGACCCTCCATGGCCGTTTTGAGATTCTCTCATTGCTCGGATCAATCTTGCCTCCTCCAGCCCCTCCTGGGATTACAGGTCTAACTATCTACTTAGCTGGGGCTCAGGGGCAGGTTGTAGGTGGGGGTGTGGTAGGTGCACTCATTGCTTCGGGGCCTGTTGTGATCATGGCTGCATCGTTCATGAATGCAACGTTTGATCGTCTTCCACTGGATGAAGATGAAGTAGCTGTAGCTTTGCAAAACCAACAATACCAAAATGGTCGTCACCACCACCTGGATATGTCAGATTTATATGGACTTCCACCAAATCTGCTCACTAATGGTAATGTGCCCCCTGAGGTTTATTCCTGGGCATCTGGCCGAACTATGTCAAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0016020 GO:0022857 GO:0031090 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

293

Amino Acids

30.99

Weight (kDa)

7.75

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	116 - 228	2e-24	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21690
fragaria_vesca	FvH4_3g02250 FvH4_3g02250 FvH4_6g43220 FvH4_6g43220
malus_domestica	MD05G1344500.v1.1 MD05G1344900.v1.1 MD09G1108500.v1.1 MD17G1096400.v1.1
prunus_persica	Prupe.3G217600_v2.0.a1 Prupe.3G217600_v2.0.a1 Prupe.3G217600_v2.0.a1 Prupe.4G021900_v2.0.a1
pyrus_communis	pycom05g31380 pycom09g03100 pycom17g09250
rosa_chinensis	RchiOBHm_Chr2g0159351 RchiOBHm_Chr2g0159471 RchiOBHm_Chr5g0003321 RchiOBHm_Chr5g0003371
rosa_laevigata	RLG00000021157 RLG00000021161 RLG00000031126 RLG00000031130
rosa_multiflora	Rmu_sc0004800.1_g000007 Rmu_sc0006842.1_g000002 Rmu_sc0007710.1_g000003 Rmu_sc0010917.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072650
rosa_rugosa	Rorug02G0475900 Rorug02G0476200 Rorug02G0476300 Rorug02G0476500 Rorug02G0476600 Rorug02G0476700 Rorug04G0402700.1 Rorug04G0402800
rosa_samantha	Rh2AG542800 Rh2AG543100 Rh2BG555300 Rh2BG555800 Rh2DG564900 Rh2DG565200 Rh5AG028800 Rh5BG028900 Rh5DG029400
rosa_wichuraiana	Rw2G044870 Rw2G044920 Rw5G002370 Rw5G002680 Rw5G002730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	351
Acc36I	ACCTGC	1 cut(s)	601
AccB1I	GGYRCC	1 cut(s)	202
AccB7I	CCANNNNNTGG	1 cut(s)	775
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	1 cut(s)	327
AccIII	TCCGGA	1 cut(s)	488
AciI	CCGC	4 cut(s)	95, 284, 325, 472
AclI	AACGTT	1 cut(s)	692
AclWI	GGATC	2 cut(s)	105, 547
AcoI	YGGCCR	2 cut(s)	511, 859
AcuI	CTGAAG	1 cut(s)	114
AfiI	CCNNNNNNNGG	2 cut(s)	567, 775
AjnI	CCWGG	4 cut(s)	178, 565, 774, 848
AluBI	AGCT	4 cut(s)	482, 596, 728, 734
AluI	AGCT	4 cut(s)	482, 596, 728, 734
Alw21I	GWGCWC	1 cut(s)	640
Alw26I	GTCTC	1 cut(s)	248
Alw44I	GTGCAC	1 cut(s)	636
AlwI	GGATC	2 cut(s)	105, 547
Aor13HI	TCCGGA	1 cut(s)	488
AoxI	GGCC	5 cut(s)	176, 278, 511, 653, 859
ApaLI	GTGCAC	1 cut(s)	636
ApeKI	GCWGC	1 cut(s)	671
ArsI	GACNNNNNNTTYG	2 cut(s)	748, 780
AspLEI	GCGC	2 cut(s)	343, 352
AspS9I	GGNCC	2 cut(s)	107, 653
AsuHPI	GGTGA	4 cut(s)	56, 161, 313, 758
AvaII	GGWCC	1 cut(s)	107
AxyI	CCTNAGG	1 cut(s)	837
BaeGI	GKGCMC	2 cut(s)	640, 834
BanI	GGYRCC	1 cut(s)	202
BanII	GRGCYC	1 cut(s)	604
BauI	CACGAG	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	695
Bbv12I	GWGCWC	1 cut(s)	640
BbvCI	CCTCAGC	1 cut(s)	238
BbvI	GCAGC	1 cut(s)	658
BceAI	ACGGC	1 cut(s)	498
BciT130I	CCWGG	4 cut(s)	180, 567, 776, 850
BclI	TGATCA	2 cut(s)	54, 663
BcoDI	GTCTC	1 cut(s)	248
BfmI	CTRYAG	1 cut(s)	729
BfuAI	ACCTGC	1 cut(s)	601
BisI	GCNGC	2 cut(s)	473, 672
BlsI	GCNGC	2 cut(s)	474, 673
Bme1390I	CCNGG	4 cut(s)	180, 567, 776, 850
Bme18I	GGWCC	1 cut(s)	107
BmgT120I	GGNCC	2 cut(s)	107, 653
BmiI	GGNNCC	3 cut(s)	204, 493, 654
BmrFI	CCNGG	4 cut(s)	180, 567, 776, 850
BmsI	GCATC	6 cut(s)	139, 178, 235, 251, 683, 863
BpiI	GAAGAC	1 cut(s)	695
BplI	GAGNNNNNCTC	2 cut(s)	512, 544
BpmI	CTGGAG	1 cut(s)	540
Bpu10I	CCTNAGC	2 cut(s)	238, 603
BsaJI	CCNNGG	4 cut(s)	246, 508, 566, 849
BsaWI	WCCGGW	2 cut(s)	229, 488
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	2 cut(s)	567, 775
Bse118I	RCCGGY	1 cut(s)	280
Bse1I	ACTGG	2 cut(s)	221, 714
Bse21I	CCTNAGG	1 cut(s)	837
Bse3DI	GCAATG	4 cut(s)	57, 191, 530, 642
BseAI	TCCGGA	1 cut(s)	488
BseBI	CCWGG	4 cut(s)	180, 567, 776, 850
BseDI	CCNNGG	4 cut(s)	246, 508, 566, 849
BseGI	GGATG	3 cut(s)	226, 242, 718
BseLI	CCNNNNNNNGG	2 cut(s)	567, 775
BseMI	GCAATG	4 cut(s)	57, 191, 530, 642
BseMII	CTCAG	4 cut(s)	252, 428, 617, 828
BseNI	ACTGG	2 cut(s)	221, 714
BseRI	GAGGAG	1 cut(s)	543
BseSI	GKGCMC	2 cut(s)	640, 834
BseXI	GCAGC	1 cut(s)	658
BseYI	CCCAGC	1 cut(s)	596
Bsh1236I	CGCG	1 cut(s)	327
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	5 cut(s)	178, 280, 513, 655, 861
BshNI	GGYRCC	1 cut(s)	202
BsiEI	CGRYCG	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	640
BsiSI	CCGG	4 cut(s)	230, 262, 281, 489
BslI	CCNNNNNNNGG	2 cut(s)	567, 775
BsmAI	GTCTC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	691
BsnI	GGCC	5 cut(s)	178, 280, 513, 655, 861
Bsp1286I	GDGCHC	3 cut(s)	604, 640, 834
Bsp13I	TCCGGA	1 cut(s)	488
Bsp143I	GATC	5 cut(s)	54, 97, 539, 663, 697
Bsp19I	CCATGG	1 cut(s)	508
BspACI	CCGC	4 cut(s)	95, 284, 325, 472
BspANI	GGCC	5 cut(s)	178, 280, 513, 655, 861
BspCNI	CTCAG	4 cut(s)	251, 429, 616, 829
BspEI	TCCGGA	1 cut(s)	488
BspFNI	CGCG	1 cut(s)	327
BspHI	TCATGA	1 cut(s)	681
BspLI	GGNNCC	3 cut(s)	204, 493, 654
BspMI	ACCTGC	1 cut(s)	601
BspPI	GGATC	2 cut(s)	105, 547
BspT107I	GGYRCC	1 cut(s)	202
BsrDI	GCAATG	4 cut(s)	57, 191, 530, 642
BsrFI	RCCGGY	1 cut(s)	280
BsrI	ACTGG	2 cut(s)	221, 714
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	4 cut(s)	246, 508, 566, 849
BssMI	GATC	5 cut(s)	54, 97, 539, 663, 697
BssSI	CACGAG	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	508
Bst2BI	CACGAG	1 cut(s)	270
Bst2UI	CCWGG	4 cut(s)	180, 567, 776, 850
BstAPI	GCANNNNNTGC	2 cut(s)	92, 644
BstC8I	GCNNGC	2 cut(s)	282, 354
BstDEI	CTNAG	5 cut(s)	238, 437, 592, 603, 837
BstDSI	CCRYGG	1 cut(s)	508
BstF5I	GGATG	3 cut(s)	226, 242, 718
BstFNI	CGCG	1 cut(s)	327
BstHHI	GCGC	2 cut(s)	343, 352
BstKTI	GATC	5 cut(s)	57, 100, 542, 666, 700
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	5 cut(s)	54, 97, 539, 663, 697
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 347, 349, 644
BstNI	CCWGG	4 cut(s)	180, 567, 776, 850
BstNSI	RCATGY	1 cut(s)	356
BstSCI	CCNGG	4 cut(s)	178, 565, 774, 848
BstSFI	CTRYAG	1 cut(s)	729
BstSLI	GKGCMC	2 cut(s)	640, 834
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	658
BstV2I	GAAGAC	1 cut(s)	695
BstX2I	RGATCY	1 cut(s)	97
BstXI	CCANNNNNNTGG	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	97
Bsu36I	CCTNAGG	1 cut(s)	837
BsuRI	GGCC	5 cut(s)	178, 280, 513, 655, 861
BtgI	CCRYGG	1 cut(s)	508
BtsCI	GGATG	3 cut(s)	226, 242, 718
BtsI	GCAGTG	1 cut(s)	467
BtsIMutI	CAGTG	3 cut(s)	228, 467, 707
BveI	ACCTGC	1 cut(s)	601
Cac8I	GCNNGC	2 cut(s)	282, 354
CciI	TCATGA	1 cut(s)	681
CfoI	GCGC	2 cut(s)	343, 352
Cfr10I	RCCGGY	1 cut(s)	280
Cfr13I	GGNCC	2 cut(s)	107, 653
CviAII	CATG	5 cut(s)	41, 353, 509, 667, 682
DdeI	CTNAG	5 cut(s)	238, 437, 592, 603, 837
DpnI	GATC	5 cut(s)	56, 99, 541, 665, 699
DpnII	GATC	5 cut(s)	54, 97, 539, 663, 697
EaeI	YGGCCR	2 cut(s)	511, 859
Eco130I	CCWWGG	1 cut(s)	508
Eco147I	AGGCCT	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	604
Eco47I	GGWCC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	114
Eco81I	CCTNAGG	1 cut(s)	837
EcoO109I	RGGNCCY	2 cut(s)	107, 653
EcoRII	CCWGG	4 cut(s)	178, 565, 774, 848
EcoT14I	CCWWGG	1 cut(s)	508
EcoT22I	ATGCAT	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	604
ErhI	CCWWGG	1 cut(s)	508
FaeI	CATG	5 cut(s)	44, 356, 512, 670, 685
FatI	CATG	5 cut(s)	40, 352, 508, 666, 681
FauI	CCCGC	2 cut(s)	277, 332
FbaI	TGATCA	2 cut(s)	54, 663
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	473, 672
FokI	GGATG	3 cut(s)	213, 229, 725
FriOI	GRGCYC	1 cut(s)	604
Fsp4HI	GCNGC	2 cut(s)	473, 672
FspAI	RTGCGCAY	1 cut(s)	351
FspI	TGCGCA	1 cut(s)	351
GlaI	GCGC	2 cut(s)	342, 351
GluI	GCNGC	2 cut(s)	473, 672
GsaI	CCCAGC	1 cut(s)	600
GsuI	CTGGAG	1 cut(s)	540
HaeIII	GGCC	5 cut(s)	178, 280, 513, 655, 861
HapII	CCGG	4 cut(s)	230, 262, 281, 489
HhaI	GCGC	2 cut(s)	343, 352
Hin1II	CATG	5 cut(s)	44, 356, 512, 670, 685
Hin6I	GCGC	2 cut(s)	341, 350
HinP1I	GCGC	2 cut(s)	341, 350
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	2 cut(s)	47, 523
HpaII	CCGG	4 cut(s)	230, 262, 281, 489
HphI	GGTGA	4 cut(s)	56, 161, 313, 758
Hpy166II	GTNNAC	2 cut(s)	136, 638
Hpy188I	TCNGA	4 cut(s)	54, 247, 539, 787
Hpy188III	TCNNGA	2 cut(s)	489, 682
Hpy8I	GTNNAC	2 cut(s)	136, 638
HpyCH4IV	ACGT	1 cut(s)	692
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 347, 349, 644
HpyF3I	CTNAG	5 cut(s)	238, 437, 592, 603, 837
HpySE526I	ACGT	1 cut(s)	692
Hsp92II	CATG	5 cut(s)	44, 356, 512, 670, 685
HspAI	GCGC	2 cut(s)	341, 350
Kpn2I	TCCGGA	1 cut(s)	488
KroI	GCCGGC	1 cut(s)	280
KroNI	GCCGGC	1 cut(s)	282
Ksp22I	TGATCA	2 cut(s)	54, 663
Kzo9I	GATC	5 cut(s)	54, 97, 539, 663, 697
LmnI	GCTCC	1 cut(s)	491
Lsp1109I	GCAGC	1 cut(s)	658
LweI	GCATC	6 cut(s)	139, 178, 235, 251, 683, 863
MaeII	ACGT	1 cut(s)	692
MaeIII	GTNAC	5 cut(s)	319, 454, 463, 499, 764
MalI	GATC	5 cut(s)	56, 99, 541, 665, 699
MboI	GATC	5 cut(s)	54, 97, 539, 663, 697
MboII	GAAGA	2 cut(s)	695, 728
MflI	RGATCY	1 cut(s)	97
MhlI	GDGCHC	3 cut(s)	604, 640, 834
MluCI	AATT	1 cut(s)	25
Mph1103I	ATGCAT	1 cut(s)	193
MroI	TCCGGA	1 cut(s)	488
MroNI	GCCGGC	1 cut(s)	280
MseI	TTAA	1 cut(s)	395
MspI	CCGG	4 cut(s)	230, 262, 281, 489
MspR9I	CCNGG	4 cut(s)	180, 567, 776, 850
Mva1269I	GAATGC	1 cut(s)	691
MvaI	CCWGG	4 cut(s)	180, 567, 776, 850
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	4 cut(s)	92, 347, 349, 644
NaeI	GCCGGC	1 cut(s)	282
NcoI	CCATGG	1 cut(s)	508
NdeII	GATC	5 cut(s)	54, 97, 539, 663, 697
NgoMIV	GCCGGC	1 cut(s)	280
NlaIII	CATG	5 cut(s)	44, 356, 512, 670, 685
NlaIV	GGNNCC	3 cut(s)	204, 493, 654
NmuCI	GTSAC	4 cut(s)	319, 463, 499, 764
NsbI	TGCGCA	1 cut(s)	351
NsiI	ATGCAT	1 cut(s)	193
NspI	RCATGY	1 cut(s)	356
PaeI	GCATGC	1 cut(s)	356
PagI	TCATGA	1 cut(s)	681
PceI	AGGCCT	1 cut(s)	178
PctI	GAATGC	1 cut(s)	691
PdiI	GCCGGC	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	47, 523
PflMI	CCANNNNNTGG	1 cut(s)	775
PkrI	GCNGC	2 cut(s)	474, 673
PpuMI	RGGWCCY	1 cut(s)	107
Psp1406I	AACGTT	1 cut(s)	692
Psp5II	RGGWCCY	1 cut(s)	107
Psp6I	CCWGG	4 cut(s)	178, 565, 774, 848
PspFI	CCCAGC	1 cut(s)	596
PspGI	CCWGG	4 cut(s)	178, 565, 774, 848
PspN4I	GGNNCC	3 cut(s)	204, 493, 654
PspPI	GGNCC	2 cut(s)	107, 653
PspPPI	RGGWCCY	1 cut(s)	107
PsuI	RGATCY	1 cut(s)	97
SalI	GTCGAC	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	395
SatI	GCNGC	2 cut(s)	473, 672
Sau3AI	GATC	5 cut(s)	54, 97, 539, 663, 697
Sau96I	GGNCC	2 cut(s)	107, 653
ScrFI	CCNGG	4 cut(s)	180, 567, 776, 850
SduI	GDGCHC	3 cut(s)	604, 640, 834
SfaNI	GCATC	6 cut(s)	139, 178, 235, 251, 683, 863
SfcI	CTRYAG	1 cut(s)	729
SinI	GGWCC	1 cut(s)	107
SphI	GCATGC	1 cut(s)	356
Sse9I	AATT	1 cut(s)	25
SseBI	AGGCCT	1 cut(s)	178
SsiI	CCGC	4 cut(s)	95, 284, 325, 472
StuI	AGGCCT	1 cut(s)	178
StyD4I	CCNGG	4 cut(s)	178, 565, 774, 848
StyI	CCWWGG	1 cut(s)	508
TaiI	ACGT	1 cut(s)	695
TaqI	TCGA	1 cut(s)	135
TaqII	GACCGA	1 cut(s)	153
TasI	AATT	1 cut(s)	25
TauI	GCSGC	1 cut(s)	475
TfiI	GAWTC	2 cut(s)	47, 523
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TscAI	CASTG	3 cut(s)	228, 474, 714
TseFI	GTSAC	4 cut(s)	319, 463, 499, 764
TseI	GCWGC	1 cut(s)	671
Tsp45I	GTSAC	4 cut(s)	319, 463, 499, 764
TspDTI	ATGAA	4 cut(s)	670, 698, 729, 735
TspRI	CASTG	3 cut(s)	228, 474, 714
Van91I	CCANNNNNTGG	1 cut(s)	775
VneI	GTGCAC	1 cut(s)	636
VpaK11BI	GGWCC	1 cut(s)	107
XceI	RCATGY	1 cut(s)	356
XmiI	GTMKAC	1 cut(s)	135
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.