Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001481

Physical Location & Seq

Genomic Coordinates Reverse (-)

60783894 .. 60786586

Gene Structure 2693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0476300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGTGATGATGATTGGTGGAAGGTTCAACTATGGTATAATAGTATTCCTGATCCTATTGGGTCATTTCTTCTGTTCAGGTTTGAAGGTGAGAATTAAAGAACAAAGCCATGAACAGAAACAGCTACATATTACTACTTCAATTTCCACAACCCAGAAAGACATCACAACCCCAATAACCACAGTTCCTACAATAACTCCCACCACTCCCACTTCATCAACACCAATTATGAACCCTACTTCCACACCAGATTCAACCTCTCCAGTTACTACAACCCCCTTTTCTACTACCACAACATCATCCACTTCTGCAAGTTGGTGTGTTGCTAGCCCAAGTGCATCACAAATGGCATTACAAGTTGCCTTGGACTATGCTTGTGGCTATGGTGGCACTGATTGTTCAGAGATTCAGCTTGGTCGAAGTTGTTACAACCCAAATACTGTCCGAGACCATGCTTCTTTTGCATTCAATAACTTTTATCAGAAGAATCCAGTTCCAAATAGCTGCAATTTTGGTGGCACTGCTGTCATCACCAGCAATGATCCAAGTACTGGGACATGTCAATATCCATCCACTAGCACAAGTTCATCGGTTTTGAACACAACAAATTCAAGTGGCTCAACGGTTTTCGGTGCAGTACCTTCTGGTCCTTCTACCTCTTCAGTAGCTGCTGCTGCAAGTTCGCATAGCCTGCGAAACTTGTTCACTATGATGTCTCTGACGGTGGTTCTACTCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0016020 GO:0022857 GO:0031090 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

246

Amino Acids

25.82

Weight (kDa)

7.61

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	105 - 175	2.7e-20	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21690
fragaria_vesca	FvH4_3g02250 FvH4_3g02250 FvH4_6g43220 FvH4_6g43220
malus_domestica	MD05G1344500.v1.1 MD05G1344900.v1.1 MD09G1108500.v1.1 MD17G1096400.v1.1
prunus_persica	Prupe.3G217600_v2.0.a1 Prupe.3G217600_v2.0.a1 Prupe.3G217600_v2.0.a1 Prupe.4G021900_v2.0.a1
pyrus_communis	pycom05g31380 pycom09g03100 pycom17g09250
rosa_chinensis	RchiOBHm_Chr2g0159351 RchiOBHm_Chr2g0159471 RchiOBHm_Chr5g0003321 RchiOBHm_Chr5g0003371
rosa_laevigata	RLG00000021157 RLG00000021161 RLG00000031126 RLG00000031130
rosa_multiflora	Rmu_sc0004800.1_g000007 Rmu_sc0006842.1_g000002 Rmu_sc0007710.1_g000003 Rmu_sc0010917.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072650
rosa_rugosa	Rorug02G0475900 Rorug02G0476200 Rorug02G0476300 Rorug02G0476500 Rorug02G0476600 Rorug02G0476700 Rorug04G0402700.1 Rorug04G0402800
rosa_samantha	Rh2AG542800 Rh2AG543100 Rh2BG555300 Rh2BG555800 Rh2DG564900 Rh2DG565200 Rh5AG028800 Rh5BG028900 Rh5DG029400
rosa_wichuraiana	Rw2G044870 Rw2G044920 Rw5G002370 Rw5G002680 Rw5G002730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	551
AclWI	GGATC	2 cut(s)	46, 536
AcsI	RAATTY	1 cut(s)	607
AcuI	CTGAAG	1 cut(s)	645
AfaI	GTAC	2 cut(s)	550, 639
AfiI	CCNNNNNNNGG	1 cut(s)	551
AflIII	ACRYGT	1 cut(s)	557
AgsI	TTSAA	7 cut(s)	28, 85, 141, 255, 469, 598, 612
AloI	GAACNNNNNNTCC	2 cut(s)	224, 256
AluBI	AGCT	4 cut(s)	124, 412, 504, 668
AluI	AGCT	4 cut(s)	124, 412, 504, 668
Alw26I	GTCTC	2 cut(s)	441, 720
AlwI	GGATC	2 cut(s)	46, 536
AlwNI	CAGNNNCTG	1 cut(s)	668
ApeKI	GCWGC	4 cut(s)	504, 668, 671, 674
ApoI	RAATTY	1 cut(s)	607
AspS9I	GGNCC	1 cut(s)	647
AsuHPI	GGTGA	3 cut(s)	16, 100, 523
AsuNHI	GCTAGC	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	647
BbvI	GCAGC	4 cut(s)	491, 655, 658, 661
BccI	CCATC	1 cut(s)	577
BcoDI	GTCTC	2 cut(s)	441, 720
BfaI	CTAG	2 cut(s)	327, 576
BisI	GCNGC	4 cut(s)	505, 669, 672, 675
BlsI	GCNGC	4 cut(s)	506, 670, 673, 676
BmcAI	AGTACT	1 cut(s)	550
Bme18I	GGWCC	1 cut(s)	647
BmgT120I	GGNCC	1 cut(s)	647
BmrI	ACTGGG	1 cut(s)	561
BmsI	GCATC	1 cut(s)	347
BmtI	GCTAGC	1 cut(s)	330
BmuI	ACTGGG	1 cut(s)	561
BpmI	CTGGAG	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	441
BsaJI	CCNNGG	1 cut(s)	363
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bsc4I	CCNNNNNNNGG	1 cut(s)	551
Bse1I	ACTGG	3 cut(s)	263, 491, 556
Bse3DI	GCAATG	1 cut(s)	544
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	2 cut(s)	299, 569
BseLI	CCNNNNNNNGG	1 cut(s)	551
BseMI	GCAATG	1 cut(s)	544
BseNI	ACTGG	3 cut(s)	263, 491, 556
BseXI	GCAGC	4 cut(s)	491, 655, 658, 661
BsgI	GTGCAG	1 cut(s)	654
BslFI	GGGAC	1 cut(s)	568
BslI	CCNNNNNNNGG	1 cut(s)	551
BsmAI	GTCTC	2 cut(s)	441, 720
BsmFI	GGGAC	1 cut(s)	568
BsmI	GAATGC	1 cut(s)	464
Bso31I	GGTCTC	1 cut(s)	441
Bsp143I	GATC	2 cut(s)	51, 541
BspOI	GCTAGC	1 cut(s)	330
BspPI	GGATC	2 cut(s)	46, 536
BspTNI	GGTCTC	1 cut(s)	441
BsrDI	GCAATG	1 cut(s)	544
BsrI	ACTGG	3 cut(s)	263, 491, 556
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	2 cut(s)	51, 541
BssT1I	CCWWGG	1 cut(s)	363
Bst4CI	ACNGT	4 cut(s)	184, 442, 625, 724
Bst6I	CTCTTC	1 cut(s)	664
BstAPI	GCANNNNNTGC	1 cut(s)	691
BstC8I	GCNNGC	2 cut(s)	328, 692
BstF5I	GGATG	2 cut(s)	299, 569
BstKTI	GATC	2 cut(s)	54, 544
BstMAI	GTCTC	2 cut(s)	441, 720
BstMBI	GATC	2 cut(s)	51, 541
BstMWI	GCNNNNNNNGC	4 cut(s)	387, 461, 674, 691
BstNSI	RCATGY	1 cut(s)	561
BstV1I	GCAGC	4 cut(s)	491, 655, 658, 661
BtsCI	GGATG	2 cut(s)	299, 569
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	2 cut(s)	390, 519
Cac8I	GCNNGC	2 cut(s)	328, 692
CaiI	CAGNNNCTG	1 cut(s)	668
Cfr13I	GGNCC	1 cut(s)	647
Csp6I	GTAC	2 cut(s)	549, 638
CspCI	CAANNNNNGTGG	2 cut(s)	496, 531
CviAII	CATG	3 cut(s)	110, 452, 558
CviJI	RGCY	9 cut(s)	108, 124, 330, 381, 412, 504, 618, 668, 690
CviKI_1	RGCY	9 cut(s)	108, 124, 330, 381, 412, 504, 618, 668, 690
CviQI	GTAC	2 cut(s)	549, 638
DpnI	GATC	2 cut(s)	53, 543
DpnII	GATC	2 cut(s)	51, 541
Eam1104I	CTCTTC	1 cut(s)	664
EarI	CTCTTC	1 cut(s)	664
Eco130I	CCWWGG	1 cut(s)	363
Eco31I	GGTCTC	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	647
Eco57I	CTGAAG	1 cut(s)	645
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	3 cut(s)	113, 455, 561
FaqI	GGGAC	1 cut(s)	568
FatI	CATG	3 cut(s)	109, 451, 557
Fnu4HI	GCNGC	4 cut(s)	505, 669, 672, 675
FokI	GGATG	2 cut(s)	286, 556
Fsp4HI	GCNGC	4 cut(s)	505, 669, 672, 675
FspBI	CTAG	2 cut(s)	327, 576
GluI	GCNGC	4 cut(s)	505, 669, 672, 675
GsuI	CTGGAG	1 cut(s)	246
Hin1II	CATG	3 cut(s)	113, 455, 561
HinfI	GANTC	3 cut(s)	251, 406, 487
HphI	GGTGA	3 cut(s)	16, 100, 523
Hpy166II	GTNNAC	1 cut(s)	705
Hpy188I	TCNGA	4 cut(s)	403, 446, 483, 720
Hpy188III	TCNNGA	1 cut(s)	49
Hpy8I	GTNNAC	1 cut(s)	705
HpyAV	CCTTC	4 cut(s)	15, 79, 651, 660
HpyCH4III	ACNGT	4 cut(s)	184, 442, 625, 724
HpyCH4V	TGCA	6 cut(s)	311, 338, 464, 507, 635, 677
HpyF10VI	GCNNNNNNNGC	4 cut(s)	387, 461, 674, 691
Hsp92II	CATG	3 cut(s)	113, 455, 561
Kzo9I	GATC	2 cut(s)	51, 541
Lsp1109I	GCAGC	4 cut(s)	491, 655, 658, 661
LweI	GCATC	1 cut(s)	347
MaeI	CTAG	2 cut(s)	327, 576
MaeIII	GTNAC	2 cut(s)	265, 425
MalI	GATC	2 cut(s)	53, 543
MboI	GATC	2 cut(s)	51, 541
MboII	GAAGA	3 cut(s)	61, 496, 651
MluCI	AATT	5 cut(s)	93, 141, 225, 508, 607
MnlI	CCTC	2 cut(s)	268, 667
MseI	TTAA	2 cut(s)	96, 739
MslI	CAYNNNNRTG	1 cut(s)	710
Mva1269I	GAATGC	1 cut(s)	464
MwoI	GCNNNNNNNGC	4 cut(s)	387, 461, 674, 691
NdeII	GATC	2 cut(s)	51, 541
NheI	GCTAGC	1 cut(s)	326
NlaIII	CATG	3 cut(s)	113, 455, 561
NspI	RCATGY	1 cut(s)	561
PciI	ACATGT	1 cut(s)	557
PctI	GAATGC	1 cut(s)	464
PfeI	GAWTC	3 cut(s)	251, 406, 487
PflMI	CCANNNNNTGG	1 cut(s)	551
PkrI	GCNGC	4 cut(s)	506, 670, 673, 676
PscI	ACATGT	1 cut(s)	557
PspPI	GGNCC	1 cut(s)	647
PstNI	CAGNNNCTG	1 cut(s)	668
RsaI	GTAC	2 cut(s)	550, 639
RsaNI	GTAC	2 cut(s)	549, 638
RseI	CAYNNNNRTG	1 cut(s)	710
SaqAI	TTAA	2 cut(s)	96, 739
SatI	GCNGC	4 cut(s)	505, 669, 672, 675
Sau3AI	GATC	2 cut(s)	51, 541
Sau96I	GGNCC	1 cut(s)	647
ScaI	AGTACT	1 cut(s)	550
SfaNI	GCATC	1 cut(s)	347
SinI	GGWCC	1 cut(s)	647
SmiMI	CAYNNNNRTG	1 cut(s)	710
Sse9I	AATT	5 cut(s)	93, 141, 225, 508, 607
SspMI	CTAG	2 cut(s)	327, 576
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	4 cut(s)	184, 442, 625, 724
TaqI	TCGA	1 cut(s)	418
TasI	AATT	5 cut(s)	93, 141, 225, 508, 607
TatI	WGTACW	1 cut(s)	548
TfiI	GAWTC	3 cut(s)	251, 406, 487
Tru1I	TTAA	2 cut(s)	96, 739
Tru9I	TTAA	2 cut(s)	96, 739
TscAI	CASTG	2 cut(s)	397, 526
TseI	GCWGC	4 cut(s)	504, 668, 671, 674
TspDTI	ATGAA	4 cut(s)	126, 204, 245, 576
TspRI	CASTG	2 cut(s)	397, 526
Van91I	CCANNNNNTGG	1 cut(s)	551
VpaK11BI	GGWCC	1 cut(s)	647
XapI	RAATTY	1 cut(s)	607
XceI	RCATGY	1 cut(s)	561
XspI	CTAG	2 cut(s)	327, 576
ZrmI	AGTACT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.