FvH4_6g43220

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
33505656 .. 33509458
3803 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43220.t1

Sequence Viewer

Length: 1386 bp
ATGGGTTCTTCCCAAGACGATAGCCACCAGCAACCTCTGCTCCAACCCATTTCATCCTCCCCATCCTTCACAGATAAGCATGACCATTACTCGAGCAGCACTGAGCTCGAAAGAATACTATCCGACACAGATAGGCCGTTCTTGCAGCGTCTCAAACCTGCTCTATGGCTCGAGTCCAAGCTCCTTTTCTTTCTCGCCTCTCCGGCAGTGGTTGTCTACATGATCAACTACCTCATGTCAATGTCCACCCAAATCTTCTCCGGCCACCTCGGTAATCTTGAGCTCGCCGCTGCTTCTCTCGGAAACAATGGCATCCAAGTCTTCGCCTACGGCCTAATGTTAGGCATGGGAAGTGCGGTAGAAACCCTATGTGGACAAGCATATGGAGCTCAAAAGTACGAAATGCTAGGCACATATCTACAAAGATCAACCATCCTCCTAACGTTGGTAGGTTTCCTCCTCACCTTGGTCTACATCTTCTCGGAACCAGCCCTCATCTTGCTTGGCCAGTCCCCGAGAATCGCCTCCGCCGCCGCCGTTTACGTTTACGGCCTGATCCCTCAAATCTTTGCCTACGCCGTCAACTTCCCCATTCAAAAGTTTCTCCAAGCTCAAAGCATAGTAGCACCAAGTGCATACATATCAACAGTGACACTAGTCTTACACCTCTTGCTGAGCTGGGTGGCGGTGTACAAGATAGGTCTAGGGCTTCTGGGCGCGTCGCTGGTGCTCAGCCTGTCGTGGTGGATCACGGTGGTGGCACAGTTTGTGTATATCGTGAAGAGCGAGAGGTGCAGGAAGACGTGGAGCGGTTTTACGTGGCAAGCGTTTACCGGGTTGTATGGATTCTTCAAACTATCGGTGGCGTCTGCGGTGATGCTGTGTTTAGAGACGTGGTATTTTCAGATTCTGGTTCTGCTGGCTGGCTTGCTAGAAAATCCTGAGTTGGCTCTTGACTCGCTCTCGATTTGCATGACGATAGCAGGATGGGTGTTCATGATCTCAGTCGGGTTAAATGCAGCTGCAAGTGTGAGAGTAAGCAATGAGCTTGGAGCCGGAAATCCCAAGTCCACAGCATTTTCCGTCGTTGTGGTGACTACGATCTCCTTCATCATTTCCGTCATTGCAGCCATAGCTGTTCTTATTTTCCGAGACGTTATCAGCTACGCCTTCACGGAGGGTGAAGTCGTGGCTGCTGCTGTCTCAGATCTCACCCCTCTGCTTGCCCTCACCCTCCTCCTCAATGGAATTCAGCCAGTCTTGTGTCCGTGTTGCTGTTGGGTGTGGATGGCAAGCTTTTGTGGCGTATGTAAATGTGGGGTGTTATTACTTGGTTGGAGTACCCCTCGGTGTCCTTCTTGGTTTTTACTTCAACTTTGGTGCTAA

Protein Analysis

462

Amino Acids

50.26

Weight (kDa)

6.21

Isoelectric Point (pI)

33.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 68 - 228 6.3e-37 MatE
MatE PF01554 290 - 422 4.6e-24 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 166
AccBSI CCGCTC 1 cut(s) 810
AccI GTMKAC 2 cut(s) 216, 471
AccII CGCG 1 cut(s) 719
AciI CCGC 8 cut(s) 288, 356, 528, 531, 534, 686, 810, 872
AclI AACGTT 1 cut(s) 443
AclWI GGATC 2 cut(s) 550, 755
AcoI YGGCCR 2 cut(s) 262, 505
AcsI RAATTY 1 cut(s) 1248
AcyI GRCGYC 1 cut(s) 866
AdeI CACNNNGTG 1 cut(s) 632
AfaI GTAC 3 cut(s) 398, 692, 1342
AfiI CCNNNNNNNGG 2 cut(s) 445, 466
AgsI TTSAA 3 cut(s) 596, 853, 1373
AhlI ACTAGT 1 cut(s) 655
AjiI CACGTC 2 cut(s) 804, 894
AjuI GAANNNNNNNTTGG 2 cut(s) 170, 202
AleI CACNNNNGTG 1 cut(s) 755
Alw21I GWGCWC 4 cut(s) 108, 285, 391, 732
Alw26I GTCTC 4 cut(s) 155, 884, 1146, 1207
AlwI GGATC 2 cut(s) 550, 755
AlwNI CAGNNNCTG 1 cut(s) 910
Ama87I CYCGRG 3 cut(s) 91, 170, 514
AoxI GGCC 5 cut(s) 134, 262, 331, 505, 550
ApeKI GCWGC 8 cut(s) 96, 145, 290, 1019, 1022, 1127, 1193, 1196
ApoI RAATTY 1 cut(s) 1248
AspLEI GCGC 1 cut(s) 719
AsuC2I CCSGG 1 cut(s) 835
AsuHPI GGTGA 6 cut(s) 454, 886, 1105, 1193, 1204, 1222
AvaI CYCGRG 3 cut(s) 91, 170, 514
BalI TGGCCA 1 cut(s) 507
BanII GRGCYC 3 cut(s) 108, 285, 391
BarI GAAGNNNNNNTAC 2 cut(s) 833, 865
BbsI GAAGAC 2 cut(s) 313, 806
Bbv12I GWGCWC 4 cut(s) 108, 285, 391, 732
BbvI GCAGC 8 cut(s) 108, 157, 277, 1009, 1031, 1139, 1180, 1183
BccI CCATC 4 cut(s) 70, 440, 981, 1282
BceAI ACGGC 5 cut(s) 121, 346, 521, 563, 565
BcgI CGANNNNNNTGC 2 cut(s) 88, 122
BclI TGATCA 1 cut(s) 222
BcnI CCSGG 1 cut(s) 835
BcoDI GTCTC 4 cut(s) 155, 884, 1146, 1207
BcuI ACTAGT 1 cut(s) 655
BfaI CTAG 4 cut(s) 407, 656, 704, 932
BfuAI ACCTGC 1 cut(s) 166
BglI GCCNNNNNGGC 1 cut(s) 203
BglII AGATCT 1 cut(s) 1207
BlpI GCTNAGC 2 cut(s) 674, 731
Bme1390I CCNGG 1 cut(s) 835
BmeT110I CYCGRG 3 cut(s) 91, 170, 514
BmgBI CACGTC 2 cut(s) 804, 894
BmiI GGNNCC 2 cut(s) 486, 1054
BmrFI CCNGG 1 cut(s) 835
BmsI GCATC 2 cut(s) 321, 867
BoxI GACNNNNGTC 1 cut(s) 656
BpiI GAAGAC 2 cut(s) 313, 806
BplI GAGNNNNNCTC 2 cut(s) 1330, 1362
Bpu1102I GCTNAGC 2 cut(s) 674, 731
BpuEI CTTGAG 1 cut(s) 299
BpuMI CCSGG 1 cut(s) 835
BsaAI YACGTR 1 cut(s) 819
BsaHI GRCGYC 1 cut(s) 866
BsaJI CCNNGG 3 cut(s) 268, 465, 1346
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bsc4I CCNNNNNNNGG 2 cut(s) 445, 466
Bse1I ACTGG 2 cut(s) 508, 1256
Bse3DI GCAATG 2 cut(s) 1048, 1122
BseDI CCNNGG 3 cut(s) 268, 465, 1346
BseGI GGATG 6 cut(s) 53, 62, 312, 432, 992, 1293
BseLI CCNNNNNNNGG 2 cut(s) 445, 466
BseMI GCAATG 2 cut(s) 1048, 1122
BseMII CTCAG 6 cut(s) 93, 665, 745, 933, 1017, 1218
BseNI ACTGG 2 cut(s) 508, 1256
BseRI GAGGAG 3 cut(s) 449, 1226, 1229
BseXI GCAGC 8 cut(s) 108, 157, 277, 1009, 1031, 1139, 1180, 1183
BseYI CCCAGC 1 cut(s) 678
BsgI GTGCAG 1 cut(s) 814
Bsh1236I CGCG 1 cut(s) 719
BshFI GGCC 5 cut(s) 136, 264, 333, 507, 552
BsiHKAI GWGCWC 4 cut(s) 108, 285, 391, 732
BsiHKCI CYCGRG 3 cut(s) 91, 170, 514
BsiSI CCGG 4 cut(s) 203, 261, 834, 1056
BslFI GGGAC 1 cut(s) 496
BslI CCNNNNNNNGG 2 cut(s) 445, 466
BsmAI GTCTC 4 cut(s) 155, 884, 1146, 1207
BsmBI CGTCTC 3 cut(s) 155, 884, 1146
BsmFI GGGAC 1 cut(s) 496
BsnI GGCC 5 cut(s) 136, 264, 333, 507, 552
BsoBI CYCGRG 3 cut(s) 91, 170, 514
Bsp1286I GDGCHC 4 cut(s) 108, 285, 391, 732
Bsp1407I TGTACA 1 cut(s) 690
Bsp143I GATC 7 cut(s) 222, 425, 555, 747, 999, 1101, 1207
Bsp1720I GCTNAGC 2 cut(s) 674, 731
BspACI CCGC 8 cut(s) 288, 356, 528, 531, 534, 686, 810, 872
BspANI GGCC 5 cut(s) 136, 264, 333, 507, 552
BspCNI CTCAG 6 cut(s) 94, 666, 744, 934, 1016, 1217
BspFNI CGCG 1 cut(s) 719
BspHI TCATGA 1 cut(s) 996
BspLI GGNNCC 2 cut(s) 486, 1054
BspMI ACCTGC 1 cut(s) 166
BspPI GGATC 2 cut(s) 550, 755
BspQI GCTCTTC 1 cut(s) 776
BsrBI CCGCTC 1 cut(s) 810
BsrDI GCAATG 2 cut(s) 1048, 1122
BsrGI TGTACA 1 cut(s) 690
BsrI ACTGG 2 cut(s) 508, 1256
BssECI CCNNGG 3 cut(s) 268, 465, 1346
BssMI GATC 7 cut(s) 222, 425, 555, 747, 999, 1101, 1207
BssNI GRCGYC 1 cut(s) 866
BssT1I CCWWGG 1 cut(s) 465
Bst4CI ACNGT 3 cut(s) 649, 754, 765
Bst6I CTCTTC 1 cut(s) 776
BstACI GRCGYC 1 cut(s) 866
BstAPI GCANNNNNTGC 2 cut(s) 37, 632
BstAUI TGTACA 1 cut(s) 690
BstBAI YACGTR 1 cut(s) 819
BstC8I GCNNGC 7 cut(s) 285, 825, 921, 925, 929, 1224, 1294
BstDEI CTNAG 6 cut(s) 102, 674, 731, 942, 1003, 1204
BstF5I GGATG 6 cut(s) 53, 62, 312, 432, 992, 1293
BstFNI CGCG 1 cut(s) 719
BstHHI GCGC 1 cut(s) 719
BstKTI GATC 7 cut(s) 225, 428, 558, 750, 1002, 1104, 1210
BstMAI GTCTC 4 cut(s) 155, 884, 1146, 1207
BstMBI GATC 7 cut(s) 222, 425, 555, 747, 999, 1101, 1207
BstMWI GCNNNNNNNGC 9 cut(s) 37, 142, 203, 386, 530, 632, 792, 1133, 1302
BstPAI GACNNNNGTC 1 cut(s) 656
BstSCI CCNGG 1 cut(s) 833
BstUI CGCG 1 cut(s) 719
BstV1I GCAGC 8 cut(s) 108, 157, 277, 1009, 1031, 1139, 1180, 1183
BstV2I GAAGAC 2 cut(s) 313, 806
BstX2I RGATCY 1 cut(s) 1207
BstYI RGATCY 1 cut(s) 1207
BsuRI GGCC 5 cut(s) 136, 264, 333, 507, 552
BtrI CACGTC 2 cut(s) 804, 894
BtsCI GGATG 6 cut(s) 53, 62, 312, 432, 992, 1293
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 3 cut(s) 99, 213, 654
BveI ACCTGC 1 cut(s) 166
Cac8I GCNNGC 7 cut(s) 285, 825, 921, 925, 929, 1224, 1294
CaiI CAGNNNCTG 1 cut(s) 910
CciI TCATGA 1 cut(s) 996
CfoI GCGC 1 cut(s) 719
CseI GACGC 3 cut(s) 137, 708, 855
Csp6I GTAC 3 cut(s) 397, 691, 1341
CviAII CATG 6 cut(s) 80, 220, 235, 346, 973, 997
CviQI GTAC 3 cut(s) 397, 691, 1341
DdeI CTNAG 6 cut(s) 102, 674, 731, 942, 1003, 1204
DpnI GATC 7 cut(s) 224, 427, 557, 749, 1001, 1103, 1209
DpnII GATC 7 cut(s) 222, 425, 555, 747, 999, 1101, 1207
DraIII CACNNNGTG 1 cut(s) 632
EaeI YGGCCR 2 cut(s) 262, 505
Eam1104I CTCTTC 1 cut(s) 776
EarI CTCTTC 1 cut(s) 776
EciI GGCGGA 1 cut(s) 517
Ecl136II GAGCTC 3 cut(s) 106, 283, 389
Eco130I CCWWGG 1 cut(s) 465
Eco24I GRGCYC 3 cut(s) 108, 285, 391
Eco53kI GAGCTC 3 cut(s) 106, 283, 389
Eco88I CYCGRG 3 cut(s) 91, 170, 514
EcoICRI GAGCTC 3 cut(s) 106, 283, 389
EcoRI GAATTC 1 cut(s) 1248
EcoT14I CCWWGG 1 cut(s) 465
EcoT38I GRGCYC 3 cut(s) 108, 285, 391
ErhI CCWWGG 1 cut(s) 465
Esp3I CGTCTC 3 cut(s) 155, 884, 1146
FaeI CATG 6 cut(s) 83, 223, 238, 349, 976, 1000
FaqI GGGAC 1 cut(s) 496
FatI CATG 6 cut(s) 79, 219, 234, 345, 972, 996
FauNDI CATATG 1 cut(s) 382
FbaI TGATCA 1 cut(s) 222
FblI GTMKAC 2 cut(s) 216, 471
FokI GGATG 6 cut(s) 40, 49, 299, 419, 999, 1300
FriOI GRGCYC 3 cut(s) 108, 285, 391
FspBI CTAG 4 cut(s) 407, 656, 704, 932
GlaI GCGC 1 cut(s) 718
GsaI CCCAGC 1 cut(s) 682
HaeIII GGCC 5 cut(s) 136, 264, 333, 507, 552
HapII CCGG 4 cut(s) 203, 261, 834, 1056
HgaI GACGC 3 cut(s) 137, 708, 855
HhaI GCGC 1 cut(s) 719
Hin1I GRCGYC 1 cut(s) 866
Hin1II CATG 6 cut(s) 83, 223, 238, 349, 976, 1000
Hin6I GCGC 1 cut(s) 717
HinP1I GCGC 1 cut(s) 717
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HindIII AAGCTT 1 cut(s) 1294
HinfI GANTC 5 cut(s) 173, 519, 846, 907, 956
HpaII CCGG 4 cut(s) 203, 261, 834, 1056
HphI GGTGA 6 cut(s) 454, 886, 1105, 1193, 1204, 1222
Hpy188I TCNGA 6 cut(s) 124, 302, 484, 906, 1151, 1207
Hpy188III TCNNGA 6 cut(s) 278, 778, 941, 953, 964, 997
Hpy99I CGWCG 2 cut(s) 724, 1088
HpyAV CCTTC 4 cut(s) 76, 1117, 1180, 1365
HpyCH4III ACNGT 3 cut(s) 649, 754, 765
HpyCH4IV ACGT 6 cut(s) 443, 543, 803, 818, 893, 1155
HpyCH4V TGCA 7 cut(s) 145, 635, 795, 972, 1019, 1025, 1127
HpyF10VI GCNNNNNNNGC 9 cut(s) 37, 142, 203, 386, 530, 632, 792, 1133, 1302
HpyF3I CTNAG 6 cut(s) 102, 674, 731, 942, 1003, 1204
HpySE526I ACGT 6 cut(s) 443, 543, 803, 818, 893, 1155
Hsp92I GRCGYC 1 cut(s) 866
Hsp92II CATG 6 cut(s) 83, 223, 238, 349, 976, 1000
HspAI GCGC 1 cut(s) 717
Ksp22I TGATCA 1 cut(s) 222
Kzo9I GATC 7 cut(s) 222, 425, 555, 747, 999, 1101, 1207
LguI GCTCTTC 1 cut(s) 776
LmnI GCTCC 5 cut(s) 45, 186, 386, 807, 1052
Lsp1109I GCAGC 8 cut(s) 108, 157, 277, 1009, 1031, 1139, 1180, 1183
LweI GCATC 2 cut(s) 321, 867
MaeI CTAG 4 cut(s) 407, 656, 704, 932
MaeII ACGT 6 cut(s) 443, 543, 803, 818, 893, 1155
MaeIII GTNAC 2 cut(s) 649, 1093
MalI GATC 7 cut(s) 224, 427, 557, 749, 1001, 1103, 1209
MbiI CCGCTC 1 cut(s) 810
MboI GATC 7 cut(s) 222, 425, 555, 747, 999, 1101, 1207
MboII GAAGA 6 cut(s) 247, 313, 469, 793, 811, 841
MflI RGATCY 1 cut(s) 1207
MhlI GDGCHC 4 cut(s) 108, 285, 391, 732
MlsI TGGCCA 1 cut(s) 507
MluCI AATT 1 cut(s) 1248
MluNI TGGCCA 1 cut(s) 507
MlyI GAGTC 2 cut(s) 182, 950
MmeI TCCRAC 3 cut(s) 67, 147, 1316
Mox20I TGGCCA 1 cut(s) 507
MscI TGGCCA 1 cut(s) 507
MseI TTAA 1 cut(s) 1013
MslI CAYNNNNRTG 2 cut(s) 239, 755
Msp20I TGGCCA 1 cut(s) 507
MspA1I CMGCKG 2 cut(s) 290, 1022
MspI CCGG 4 cut(s) 203, 261, 834, 1056
MspR9I CCNGG 1 cut(s) 835
MvnI CGCG 1 cut(s) 719
MwoI GCNNNNNNNGC 9 cut(s) 37, 142, 203, 386, 530, 632, 792, 1133, 1302
NciI CCSGG 1 cut(s) 835
NdeI CATATG 1 cut(s) 382
NdeII GATC 7 cut(s) 222, 425, 555, 747, 999, 1101, 1207
NlaIII CATG 6 cut(s) 83, 223, 238, 349, 976, 1000
NlaIV GGNNCC 2 cut(s) 486, 1054
NmuCI GTSAC 2 cut(s) 649, 1093
OliI CACNNNNGTG 1 cut(s) 755
PaeR7I CTCGAG 2 cut(s) 91, 170
PagI TCATGA 1 cut(s) 996
PciSI GCTCTTC 1 cut(s) 776
PcsI WCGNNNNNNNCGW 2 cut(s) 783, 824
PfeI GAWTC 3 cut(s) 519, 846, 907
PleI GAGTC 2 cut(s) 181, 950
PpsI GAGTC 2 cut(s) 181, 950
Ppu21I YACGTR 1 cut(s) 819
PshAI GACNNNNGTC 1 cut(s) 656
Psp124BI GAGCTC 3 cut(s) 108, 285, 391
Psp1406I AACGTT 1 cut(s) 443
PspFI CCCAGC 1 cut(s) 678
PspN4I GGNNCC 2 cut(s) 486, 1054
PspXI VCTCGAGB 2 cut(s) 91, 170
PstNI CAGNNNCTG 1 cut(s) 910
PsuI RGATCY 1 cut(s) 1207
PvuII CAGCTG 1 cut(s) 1022
RsaI GTAC 3 cut(s) 398, 692, 1342
RsaNI GTAC 3 cut(s) 397, 691, 1341
RseI CAYNNNNRTG 2 cut(s) 239, 755
SacI GAGCTC 3 cut(s) 108, 285, 391
SapI GCTCTTC 1 cut(s) 776
SaqAI TTAA 1 cut(s) 1013
Sau3AI GATC 7 cut(s) 222, 425, 555, 747, 999, 1101, 1207
SchI GAGTC 2 cut(s) 182, 950
ScrFI CCNGG 1 cut(s) 835
SduI GDGCHC 4 cut(s) 108, 285, 391, 732
SfaNI GCATC 2 cut(s) 321, 867
Sfr274I CTCGAG 2 cut(s) 91, 170
SlaI CTCGAG 2 cut(s) 91, 170
SmiMI CAYNNNNRTG 2 cut(s) 239, 755
SmlI CTYRAG 3 cut(s) 91, 170, 278
SmoI CTYRAG 3 cut(s) 91, 170, 278
SpeI ACTAGT 1 cut(s) 655
Sse9I AATT 1 cut(s) 1248
SsiI CCGC 8 cut(s) 288, 356, 528, 531, 534, 686, 810, 872
SspMI CTAG 4 cut(s) 407, 656, 704, 932
SstI GAGCTC 3 cut(s) 108, 285, 391
StyD4I CCNGG 1 cut(s) 833
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 3 cut(s) 649, 754, 765
TaiI ACGT 6 cut(s) 446, 546, 806, 821, 896, 1158
TaqI TCGA 4 cut(s) 92, 108, 171, 965
TasI AATT 1 cut(s) 1248
TatI WGTACW 1 cut(s) 690
TauI GCSGC 3 cut(s) 290, 533, 536
TfiI GAWTC 3 cut(s) 519, 846, 907
Tru1I TTAA 1 cut(s) 1013
Tru9I TTAA 1 cut(s) 1013
TscAI CASTG 3 cut(s) 106, 213, 654
TseFI GTSAC 2 cut(s) 649, 1093
TseI GCWGC 8 cut(s) 96, 145, 290, 1019, 1022, 1127, 1193, 1196
Tsp45I GTSAC 2 cut(s) 649, 1093
TspDTI ATGAA 3 cut(s) 42, 985, 1099
TspGWI ACGGA 4 cut(s) 1072, 1108, 1190, 1257
TspRI CASTG 3 cut(s) 106, 213, 654
XapI RAATTY 1 cut(s) 1248
XhoI CTCGAG 2 cut(s) 91, 170
XmiI GTMKAC 2 cut(s) 216, 471
XspI CTAG 4 cut(s) 407, 656, 704, 932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.