Rmu_sc0004800.1_g000007

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004800.1
Physical Location & Seq
Forward (+)
66246 .. 70026
3781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004800.1_g000007.1.cds

Sequence Viewer

Length: 1470 bp
atgggttcttcccaagacgatacttgccaacctctccttcaacccatttcatcctccccatccttaacagataagcatgaccactcgagcagcactgagctggaaagaatattatctgacacagataggccgttcttgcagcgtctcaaacctgctctattgatcgagtcgaagctccttttcttcctcgccggtccggcagtggtcgtctacttgaccaactacgttatgttcatgtccacccaaatcttctccggccaccttggtaatcttgagctcgccgctgcttctctcggaaacaatggaatccaaatgttcgcctatggcctcatgttaggcatgggaagtgcggtggagacgctatgtggacaagcatatggagctcaaaagtacgaaatgcttggcatatatctacaaagatcaaccatcctcctaacgttggtcggtttcctcctcaccttggtctacatcttctcagaaccagctctaatctttctcggcgagtccccgagaattgcctcagccgccgccatttacgtttacggcctgatccctcaaatctttgcctacgccgtcaacttcccgatccagaaattcctccaagctcaaagcatagtgactccaagtgcatacatatcagcagtgacactagccgtacacctcttgctgagctgggtggccgtgtacaagattgggcttgggcttctgggctcgtcgctggtgctcagcctgtcgtggtggatcactgtggtggcgcagtttgtatacatcgtgaaaagcgagaggtgcaggcacacgtggagcggttttacgtggcaagcgttcaccgggttgtatggattcttcaaattatcggtggcgtctgcagtgatgctttgtttagagacgtggtattttcagattctggttctgctggctggcttgctggaaaatcctgagttggctcttgactcgctctcgatttgtgtgcgagtaagcaatgagcttggagccggaaatcccaagtccacagcattttctgtcatcgtggtgactacgatctccttcatcatctccgtcatcgcagcaatagttgttcttattttttgtgatgttatcagctacgccttcacggagggtgaagtcgtggccgctgctgtctcagatcttacccctcttcttgccctcaccctcctcctcaatggaattcagccagtattgtccggtgttgctgttgggtgtggatggcaagcttttgtggcgtatgtaaatgtgggctgttattactttgttggagtaccacttggtgcccttcttggattttacttcaactttggcgctaagggaatatggttagggatgatggcgggcacgttgatgcaaacaatcattctaatatggatcaccgttcgaacagactggaagaaggaggtggaagaggcagccaaaaggttgaacaagtgggacgtgaaggaacccgtaaaaggctga

Protein Analysis

489

Amino Acids

53.27

Weight (kDa)

5.79

Isoelectric Point (pI)

25.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 160
AccB1I GGYRCC 1 cut(s) 1286
AccBSI CCGCTC 1 cut(s) 804
AccI GTMKAC 3 cut(s) 210, 465, 765
AciI CCGC 7 cut(s) 282, 350, 525, 528, 804, 1131, 1346
AclI AACGTT 1 cut(s) 437
AclWI GGATC 4 cut(s) 544, 580, 749, 1388
AcoI YGGCCR 3 cut(s) 256, 678, 1128
AcsI RAATTY 2 cut(s) 593, 1185
AcvI CACGTG 1 cut(s) 798
AcyI GRCGYC 1 cut(s) 860
AdeI CACNNNGTG 1 cut(s) 1286
AfaI GTAC 4 cut(s) 392, 657, 686, 1278
AfiI CCNNNNNNNGG 3 cut(s) 439, 460, 1463
AflIII ACRYGT 1 cut(s) 795
AgsI TTSAA 4 cut(s) 41, 847, 1309, 1435
AjiI CACGTC 2 cut(s) 888, 1447
AjuI GAANNNNNNNTTGG 2 cut(s) 21, 53
AleI CACNNNNGTG 1 cut(s) 749
Alw21I GWGCWC 3 cut(s) 279, 385, 726
Alw26I GTCTC 4 cut(s) 149, 350, 878, 1144
AlwI GGATC 4 cut(s) 544, 580, 749, 1388
AlwNI CAGNNNCTG 1 cut(s) 904
Ama87I CYCGRG 2 cut(s) 85, 508
AoxI GGCC 6 cut(s) 128, 256, 325, 544, 678, 1128
ApeKI GCWGC 6 cut(s) 90, 139, 284, 1064, 1133, 1421
ApoI RAATTY 2 cut(s) 593, 1185
AspLEI GCGC 2 cut(s) 757, 1319
AspS9I GGNCC 1 cut(s) 194
AsuC2I CCSGG 1 cut(s) 829
AsuHPI GGTGA 6 cut(s) 448, 817, 1042, 1130, 1159, 1375
AsuII TTCGAA 1 cut(s) 1390
AvaI CYCGRG 2 cut(s) 85, 508
AvaII GGWCC 1 cut(s) 194
BaeGI GKGCMC 2 cut(s) 1291, 1352
BanI GGYRCC 1 cut(s) 1286
BanII GRGCYC 3 cut(s) 279, 385, 713
BarI GAAGNNNNNNTAC 2 cut(s) 827, 859
BbrPI CACGTG 1 cut(s) 798
Bbv12I GWGCWC 3 cut(s) 279, 385, 726
BbvCI CCTCAGC 1 cut(s) 520
BbvI GCAGC 6 cut(s) 102, 151, 271, 1076, 1120, 1433
BccI CCATC 4 cut(s) 67, 434, 1218, 1336
BceAI ACGGC 5 cut(s) 115, 557, 559, 638, 665
BcgI CGANNNNNNTGC 2 cut(s) 949, 983
BcnI CCSGG 1 cut(s) 829
BcoDI GTCTC 4 cut(s) 149, 350, 878, 1144
BfaI CTAG 1 cut(s) 650
BfmI CTRYAG 1 cut(s) 864
BfoI RGCGCY 1 cut(s) 1320
BfuAI ACCTGC 1 cut(s) 160
BglI GCCNNNNNGGC 1 cut(s) 197
BglII AGATCT 1 cut(s) 1144
BlpI GCTNAGC 2 cut(s) 668, 725
Bme1390I CCNGG 1 cut(s) 829
Bme18I GGWCC 1 cut(s) 194
BmeT110I CYCGRG 2 cut(s) 85, 508
BmgBI CACGTC 2 cut(s) 888, 1447
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 3 cut(s) 991, 1288, 1455
BmrFI CCNGG 1 cut(s) 829
BmsI GCATC 2 cut(s) 861, 1347
Bpu10I CCTNAGC 2 cut(s) 520, 1320
Bpu1102I GCTNAGC 2 cut(s) 668, 725
Bpu14I TTCGAA 1 cut(s) 1390
BpuEI CTTGAG 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 829
BsaAI YACGTR 2 cut(s) 798, 813
BsaHI GRCGYC 1 cut(s) 860
BsaJI CCNNGG 2 cut(s) 262, 459
BsaWI WCCGGW 1 cut(s) 1202
Bsc4I CCNNNNNNNGG 3 cut(s) 439, 460, 1463
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 2 cut(s) 1193, 1403
Bse3DI GCAATG 1 cut(s) 985
BseDI CCNNGG 2 cut(s) 262, 459
BseGI GGATG 5 cut(s) 50, 59, 426, 1229, 1344
BseLI CCNNNNNNNGG 3 cut(s) 439, 460, 1463
BseMI GCAATG 1 cut(s) 985
BseMII CTCAG 7 cut(s) 87, 489, 534, 659, 739, 927, 1155
BseNI ACTGG 2 cut(s) 1193, 1403
BseRI GAGGAG 3 cut(s) 443, 1163, 1166
BseSI GKGCMC 2 cut(s) 1291, 1352
BseXI GCAGC 6 cut(s) 102, 151, 271, 1076, 1120, 1433
BseYI CCCAGC 1 cut(s) 672
BsgI GTGCAG 1 cut(s) 808
BshFI GGCC 6 cut(s) 130, 258, 327, 546, 680, 1130
BshNI GGYRCC 1 cut(s) 1286
BsiHKAI GWGCWC 3 cut(s) 279, 385, 726
BsiHKCI CYCGRG 2 cut(s) 85, 508
BsiSI CCGG 6 cut(s) 192, 197, 255, 828, 993, 1203
BslFI GGGAC 2 cut(s) 490, 1457
BslI CCNNNNNNNGG 3 cut(s) 439, 460, 1463
BsmAI GTCTC 4 cut(s) 149, 350, 878, 1144
BsmBI CGTCTC 3 cut(s) 149, 350, 878
BsmFI GGGAC 2 cut(s) 490, 1457
BsnI GGCC 6 cut(s) 130, 258, 327, 546, 680, 1130
BsoBI CYCGRG 2 cut(s) 85, 508
Bsp119I TTCGAA 1 cut(s) 1390
Bsp1286I GDGCHC 6 cut(s) 279, 385, 713, 726, 1291, 1352
Bsp1407I TGTACA 1 cut(s) 684
Bsp143I GATC 8 cut(s) 162, 419, 549, 585, 741, 1038, 1144, 1380
Bsp1720I GCTNAGC 2 cut(s) 668, 725
BspACI CCGC 7 cut(s) 282, 350, 525, 528, 804, 1131, 1346
BspANI GGCC 6 cut(s) 130, 258, 327, 546, 680, 1130
BspCNI CTCAG 7 cut(s) 88, 488, 533, 660, 738, 928, 1154
BspLI GGNNCC 3 cut(s) 991, 1288, 1455
BspMAI CTGCAG 1 cut(s) 868
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 4 cut(s) 544, 580, 749, 1388
BspT104I TTCGAA 1 cut(s) 1390
BspT107I GGYRCC 1 cut(s) 1286
BsrBI CCGCTC 1 cut(s) 804
BsrDI GCAATG 1 cut(s) 985
BsrFI RCCGGY 1 cut(s) 191
BsrGI TGTACA 1 cut(s) 684
BsrI ACTGG 2 cut(s) 1193, 1403
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 2 cut(s) 262, 459
BssMI GATC 8 cut(s) 162, 419, 549, 585, 741, 1038, 1144, 1380
BssNAI GTATAC 1 cut(s) 766
BssNI GRCGYC 1 cut(s) 860
BssT1I CCWWGG 2 cut(s) 262, 459
Bst1107I GTATAC 1 cut(s) 766
Bst4CI ACNGT 2 cut(s) 748, 1387
Bst6I CTCTTC 2 cut(s) 1161, 1410
BstACI GRCGYC 1 cut(s) 860
BstAUI TGTACA 1 cut(s) 684
BstBAI YACGTR 2 cut(s) 798, 813
BstBI TTCGAA 1 cut(s) 1390
BstC8I GCNNGC 8 cut(s) 279, 791, 819, 915, 919, 923, 1230, 1348
BstDEI CTNAG 8 cut(s) 96, 475, 520, 668, 725, 936, 1141, 1320
BstF5I GGATG 5 cut(s) 50, 59, 426, 1229, 1344
BstH2I RGCGCY 1 cut(s) 1320
BstHHI GCGC 2 cut(s) 757, 1319
BstKTI GATC 8 cut(s) 165, 422, 552, 588, 744, 1041, 1147, 1383
BstMAI GTCTC 4 cut(s) 149, 350, 878, 1144
BstMBI GATC 8 cut(s) 162, 419, 549, 585, 741, 1038, 1144, 1380
BstMWI GCNNNNNNNGC 6 cut(s) 136, 197, 380, 524, 786, 1238
BstSCI CCNGG 1 cut(s) 827
BstSFI CTRYAG 1 cut(s) 864
BstSLI GKGCMC 2 cut(s) 1291, 1352
BstV1I GCAGC 6 cut(s) 102, 151, 271, 1076, 1120, 1433
BstX2I RGATCY 1 cut(s) 1144
BstYI RGATCY 1 cut(s) 1144
BstZ17I GTATAC 1 cut(s) 766
BsuRI GGCC 6 cut(s) 130, 258, 327, 546, 680, 1130
BtgZI GCGATG 1 cut(s) 1045
BtrI CACGTC 2 cut(s) 888, 1447
BtsCI GGATG 5 cut(s) 50, 59, 426, 1229, 1344
BtsI GCAGTG 3 cut(s) 207, 648, 873
BtsIMutI CAGTG 5 cut(s) 93, 207, 648, 744, 873
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 8 cut(s) 279, 791, 819, 915, 919, 923, 1230, 1348
CaiI CAGNNNCTG 1 cut(s) 904
CfoI GCGC 2 cut(s) 757, 1319
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 194
CpoI CGGWCCG 1 cut(s) 194
CseI GACGC 3 cut(s) 131, 367, 849
Csp6I GTAC 4 cut(s) 391, 656, 685, 1277
CspI CGGWCCG 1 cut(s) 194
CviAII CATG 4 cut(s) 77, 235, 331, 340
CviQI GTAC 4 cut(s) 391, 656, 685, 1277
DdeI CTNAG 8 cut(s) 96, 475, 520, 668, 725, 936, 1141, 1320
DpnI GATC 8 cut(s) 164, 421, 551, 587, 743, 1040, 1146, 1382
DpnII GATC 8 cut(s) 162, 419, 549, 585, 741, 1038, 1144, 1380
DraIII CACNNNGTG 1 cut(s) 1286
EaeI YGGCCR 3 cut(s) 256, 678, 1128
Eam1104I CTCTTC 2 cut(s) 1161, 1410
EarI CTCTTC 2 cut(s) 1161, 1410
Ecl136II GAGCTC 2 cut(s) 277, 383
Eco130I CCWWGG 2 cut(s) 262, 459
Eco24I GRGCYC 3 cut(s) 279, 385, 713
Eco47I GGWCC 1 cut(s) 194
Eco53kI GAGCTC 2 cut(s) 277, 383
Eco72I CACGTG 1 cut(s) 798
Eco88I CYCGRG 2 cut(s) 85, 508
EcoICRI GAGCTC 2 cut(s) 277, 383
EcoRI GAATTC 1 cut(s) 1185
EcoT14I CCWWGG 2 cut(s) 262, 459
EcoT38I GRGCYC 3 cut(s) 279, 385, 713
ErhI CCWWGG 2 cut(s) 262, 459
Esp3I CGTCTC 3 cut(s) 149, 350, 878
FaeI CATG 4 cut(s) 80, 238, 334, 343
FaqI GGGAC 2 cut(s) 490, 1457
FatI CATG 4 cut(s) 76, 234, 330, 339
FauI CCCGC 1 cut(s) 1339
FauNDI CATATG 1 cut(s) 376
FblI GTMKAC 3 cut(s) 210, 465, 765
FokI GGATG 5 cut(s) 37, 46, 413, 1236, 1351
FriOI GRGCYC 3 cut(s) 279, 385, 713
FspBI CTAG 1 cut(s) 650
GlaI GCGC 2 cut(s) 756, 1318
GsaI CCCAGC 1 cut(s) 676
HaeII RGCGCY 1 cut(s) 1320
HaeIII GGCC 6 cut(s) 130, 258, 327, 546, 680, 1130
HapII CCGG 6 cut(s) 192, 197, 255, 828, 993, 1203
HgaI GACGC 3 cut(s) 131, 367, 849
HhaI GCGC 2 cut(s) 757, 1319
Hin1I GRCGYC 1 cut(s) 860
Hin1II CATG 4 cut(s) 80, 238, 334, 343
Hin6I GCGC 2 cut(s) 755, 1317
HinP1I GCGC 2 cut(s) 755, 1317
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HindIII AAGCTT 1 cut(s) 1230
HinfI GANTC 7 cut(s) 167, 306, 503, 619, 840, 901, 950
HpaII CCGG 6 cut(s) 192, 197, 255, 828, 993, 1203
HphI GGTGA 6 cut(s) 448, 817, 1042, 1130, 1159, 1375
Hpy188I TCNGA 5 cut(s) 118, 296, 478, 900, 1144
Hpy188III TCNNGA 7 cut(s) 272, 583, 589, 772, 935, 947, 958
Hpy99I CGWCG 1 cut(s) 718
HpyAV CCTTC 6 cut(s) 47, 1054, 1117, 1301, 1399, 1444
HpyCH4III ACNGT 2 cut(s) 748, 1387
HpyCH4IV ACGT 8 cut(s) 225, 437, 537, 797, 812, 887, 1352, 1446
HpyCH4V TGCA 5 cut(s) 139, 629, 789, 866, 1360
HpyF10VI GCNNNNNNNGC 6 cut(s) 136, 197, 380, 524, 786, 1238
HpyF3I CTNAG 8 cut(s) 96, 475, 520, 668, 725, 936, 1141, 1320
HpySE526I ACGT 8 cut(s) 225, 437, 537, 797, 812, 887, 1352, 1446
Hsp92I GRCGYC 1 cut(s) 860
Hsp92II CATG 4 cut(s) 80, 238, 334, 343
HspAI GCGC 2 cut(s) 755, 1317
Kzo9I GATC 8 cut(s) 162, 419, 549, 585, 741, 1038, 1144, 1380
LmnI GCTCC 4 cut(s) 180, 380, 801, 989
Lsp1109I GCAGC 6 cut(s) 102, 151, 271, 1076, 1120, 1433
LweI GCATC 2 cut(s) 861, 1347
MaeI CTAG 1 cut(s) 650
MaeII ACGT 8 cut(s) 225, 437, 537, 797, 812, 887, 1352, 1446
MaeIII GTNAC 3 cut(s) 616, 643, 1030
MalI GATC 8 cut(s) 164, 421, 551, 587, 743, 1040, 1146, 1382
MbiI CCGCTC 1 cut(s) 804
MboI GATC 8 cut(s) 162, 419, 549, 585, 741, 1038, 1144, 1380
MboII GAAGA 7 cut(s) 175, 241, 463, 835, 1148, 1414, 1427
MflI RGATCY 1 cut(s) 1144
MhlI GDGCHC 6 cut(s) 279, 385, 713, 726, 1291, 1352
MluCI AATT 4 cut(s) 513, 593, 848, 1185
MlyI GAGTC 4 cut(s) 176, 512, 613, 944
MmeI TCCRAC 1 cut(s) 1252
MseI TTAA 1 cut(s) 65
MslI CAYNNNNRTG 3 cut(s) 749, 1028, 1355
MspA1I CMGCKG 2 cut(s) 284, 1133
MspI CCGG 6 cut(s) 192, 197, 255, 828, 993, 1203
MspR9I CCNGG 1 cut(s) 829
MwoI GCNNNNNNNGC 6 cut(s) 136, 197, 380, 524, 786, 1238
NciI CCSGG 1 cut(s) 829
NdeI CATATG 1 cut(s) 376
NdeII GATC 8 cut(s) 162, 419, 549, 585, 741, 1038, 1144, 1380
NlaIII CATG 4 cut(s) 80, 238, 334, 343
NlaIV GGNNCC 3 cut(s) 991, 1288, 1455
NmeAIII GCCGAG 1 cut(s) 477
NmuCI GTSAC 3 cut(s) 616, 643, 1030
NspV TTCGAA 1 cut(s) 1390
OliI CACNNNNGTG 1 cut(s) 749
PaeR7I CTCGAG 1 cut(s) 85
PcsI WCGNNNNNNNCGW 2 cut(s) 777, 818
PfeI GAWTC 3 cut(s) 306, 840, 901
PleI GAGTC 4 cut(s) 175, 511, 613, 944
PmaCI CACGTG 1 cut(s) 798
PmlI CACGTG 1 cut(s) 798
PpsI GAGTC 4 cut(s) 175, 511, 613, 944
Ppu21I YACGTR 2 cut(s) 798, 813
Psp124BI GAGCTC 2 cut(s) 279, 385
Psp1406I AACGTT 1 cut(s) 437
PspCI CACGTG 1 cut(s) 798
PspFI CCCAGC 1 cut(s) 672
PspN4I GGNNCC 3 cut(s) 991, 1288, 1455
PspPI GGNCC 1 cut(s) 194
PspXI VCTCGAGB 1 cut(s) 85
PstI CTGCAG 1 cut(s) 868
PstNI CAGNNNCTG 1 cut(s) 904
PsuI RGATCY 1 cut(s) 1144
RsaI GTAC 4 cut(s) 392, 657, 686, 1278
RsaNI GTAC 4 cut(s) 391, 656, 685, 1277
RseI CAYNNNNRTG 3 cut(s) 749, 1028, 1355
Rsr2I CGGWCCG 1 cut(s) 194
RsrII CGGWCCG 1 cut(s) 194
SacI GAGCTC 2 cut(s) 279, 385
SaqAI TTAA 1 cut(s) 65
Sau3AI GATC 8 cut(s) 162, 419, 549, 585, 741, 1038, 1144, 1380
Sau96I GGNCC 1 cut(s) 194
SchI GAGTC 4 cut(s) 176, 512, 613, 944
ScrFI CCNGG 1 cut(s) 829
SduI GDGCHC 6 cut(s) 279, 385, 713, 726, 1291, 1352
SfaNI GCATC 2 cut(s) 861, 1347
SfcI CTRYAG 1 cut(s) 864
Sfr274I CTCGAG 1 cut(s) 85
SfuI TTCGAA 1 cut(s) 1390
SinI GGWCC 1 cut(s) 194
SlaI CTCGAG 1 cut(s) 85
SmiMI CAYNNNNRTG 3 cut(s) 749, 1028, 1355
SmlI CTYRAG 2 cut(s) 85, 272
SmoI CTYRAG 2 cut(s) 85, 272
Sse9I AATT 4 cut(s) 513, 593, 848, 1185
SsiI CCGC 7 cut(s) 282, 350, 525, 528, 804, 1131, 1346
SspI AATATT 1 cut(s) 111
SspMI CTAG 1 cut(s) 650
SstI GAGCTC 2 cut(s) 279, 385
StyD4I CCNGG 1 cut(s) 827
StyI CCWWGG 2 cut(s) 262, 459
TaaI ACNGT 2 cut(s) 748, 1387
TaiI ACGT 8 cut(s) 228, 440, 540, 800, 815, 890, 1355, 1449
TaqI TCGA 5 cut(s) 86, 165, 170, 959, 1390
TasI AATT 4 cut(s) 513, 593, 848, 1185
TatI WGTACW 1 cut(s) 684
TauI GCSGC 4 cut(s) 284, 527, 530, 1133
TfiI GAWTC 3 cut(s) 306, 840, 901
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TscAI CASTG 5 cut(s) 100, 207, 648, 751, 873
TseFI GTSAC 3 cut(s) 616, 643, 1030
TseI GCWGC 6 cut(s) 90, 139, 284, 1064, 1133, 1421
Tsp45I GTSAC 3 cut(s) 616, 643, 1030
TspDTI ATGAA 3 cut(s) 39, 223, 1036
TspGWI ACGGA 2 cut(s) 1045, 1127
TspRI CASTG 5 cut(s) 100, 207, 648, 751, 873
VpaK11BI GGWCC 1 cut(s) 194
XapI RAATTY 2 cut(s) 593, 1185
XhoI CTCGAG 1 cut(s) 85
XmiI GTMKAC 3 cut(s) 210, 465, 765
XspI CTAG 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.