Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001481

Physical Location & Seq

Genomic Coordinates Reverse (-)

60767828 .. 60769013

Gene Structure 1186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0476200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCTTCCATTGAGGATGTCACTTCCTCCTTTGCTGCGTCTTTTGCTTTAGCCGGATATGAGGTCATTGATTTGTCTCGTCAGACTAGAGGTGCACAGCGGTGCCCCCGACAGTCCTACCTACTGGCCAAACAGCCTGCTGCACTCAATGATCTCAGACGATTCTTCAGAAGAGTGTGGGTGCTTGATAAGGGCTTCAAGATCCAAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGCAGGACCATTTCGTCCTGGCTTTTGACCTACAACGTGATCGAAACAAGAAAACGCTCCGCCTTGCTACCTGGGGTGGAAGCGGATATATCCTTCTTTTTTGAAAACTTGGTCGGGATGTGCAACTTATGCCATTTTCTGATGCATGACAACGATCGTTGTCCAGTTAGTATGGTGGCTGCAACACATGCTCGAGCCCGAGCTAATAATGAAAAGAGAGTGGATATTGGAACCCTATCCTTGAGTTTTAATGCAAGTACTTTCATAGAGGGCACCTTCCGCTTCCATGGTGTGCAAACACCAGTGCTTCCGCCGGTCAGCAGGGCTTTCTTTGGCCCCTACACCTCTGGACGTAAGCCTGTTATACTGCGGGAGAAACTACTTCCTAAAGAACTTGAAAATGCTTTGGCTTTAGTCCCGGCCACTGACCTCCTTGACAGCACCAAGTCTCCCCCCAAAGACAAGGCCGCTGTAGGTTCACCGTCAAAGATGATTGAGCTAGTTCCTAAACCTACACTGCCTGTTCCAACTAAGAGGGAGGAAATGATAGCGCAGCCAGAGAAAGCATCTGAAACTGAAGCAAATGCTCCTGCCAAGGTGGAGCCACGAACTAAGAAGCGAGTACGCCCTCCAACCTCTGAGGCCTCTCCCAAAAAACTGAAGATTTTACTCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0016020 GO:0022857 GO:0031090 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

303

Amino Acids

33.94

Weight (kDa)

9.88

Isoelectric Point (pI)

60.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21690
fragaria_vesca	FvH4_3g02250 FvH4_3g02250 FvH4_6g43220 FvH4_6g43220
malus_domestica	MD05G1344500.v1.1 MD05G1344900.v1.1 MD09G1108500.v1.1 MD17G1096400.v1.1
prunus_persica	Prupe.3G217600_v2.0.a1 Prupe.3G217600_v2.0.a1 Prupe.3G217600_v2.0.a1 Prupe.4G021900_v2.0.a1
pyrus_communis	pycom05g31380 pycom09g03100 pycom17g09250
rosa_chinensis	RchiOBHm_Chr2g0159351 RchiOBHm_Chr2g0159471 RchiOBHm_Chr5g0003321 RchiOBHm_Chr5g0003371
rosa_laevigata	RLG00000021157 RLG00000021161 RLG00000031126 RLG00000031130
rosa_multiflora	Rmu_sc0004800.1_g000007 Rmu_sc0006842.1_g000002 Rmu_sc0007710.1_g000003 Rmu_sc0010917.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072650
rosa_rugosa	Rorug02G0475900 Rorug02G0476200 Rorug02G0476300 Rorug02G0476500 Rorug02G0476600 Rorug02G0476700 Rorug04G0402700.1 Rorug04G0402800
rosa_samantha	Rh2AG542800 Rh2AG543100 Rh2BG555300 Rh2BG555800 Rh2DG564900 Rh2DG565200 Rh5AG028800 Rh5BG028900 Rh5DG029400
rosa_wichuraiana	Rw2G044870 Rw2G044920 Rw5G002370 Rw5G002680 Rw5G002730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	247
AccB1I	GGYRCC	2 cut(s)	102, 506
AciI	CCGC	7 cut(s)	100, 294, 317, 514, 545, 604, 702
AclWI	GGATC	1 cut(s)	196
AcoI	YGGCCR	2 cut(s)	126, 654
AcuI	CTGAAG	2 cut(s)	151, 831
AfaI	GTAC	2 cut(s)	493, 858
AgsI	TTSAA	3 cut(s)	199, 338, 632
AjnI	CCWGG	2 cut(s)	251, 304
AleI	CACNNNNGTG	1 cut(s)	100
AluBI	AGCT	2 cut(s)	437, 733
AluI	AGCT	2 cut(s)	437, 733
Alw21I	GWGCWC	1 cut(s)	97
Alw26I	GTCTC	2 cut(s)	81, 687
Alw44I	GTGCAC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	196
Ama87I	CYCGRG	2 cut(s)	426, 432
AoxI	GGCC	5 cut(s)	126, 568, 654, 699, 876
ApaLI	GTGCAC	1 cut(s)	93
ApeKI	GCWGC	4 cut(s)	35, 140, 413, 787
AspLEI	GCGC	1 cut(s)	787
AspS9I	GGNCC	2 cut(s)	240, 569
AsuC2I	CCSGG	1 cut(s)	653
AsuHPI	GGTGA	1 cut(s)	705
AvaI	CYCGRG	2 cut(s)	426, 432
AvaII	GGWCC	1 cut(s)	240
BaeGI	GKGCMC	3 cut(s)	97, 107, 509
BalI	TGGCCA	1 cut(s)	128
BanI	GGYRCC	2 cut(s)	102, 506
BanII	GRGCYC	1 cut(s)	433
Bbv12I	GWGCWC	1 cut(s)	97
BbvI	GCAGC	4 cut(s)	22, 127, 400, 799
BciT130I	CCWGG	2 cut(s)	253, 306
BcnI	CCSGG	1 cut(s)	653
BcoDI	GTCTC	2 cut(s)	81, 687
BfaI	CTAG	2 cut(s)	87, 734
BfmI	CTRYAG	1 cut(s)	705
BisI	GCNGC	5 cut(s)	36, 141, 414, 702, 788
BlsI	GCNGC	5 cut(s)	37, 142, 415, 703, 789
BmcAI	AGTACT	1 cut(s)	493
Bme1390I	CCNGG	3 cut(s)	253, 306, 653
Bme18I	GGWCC	1 cut(s)	240
BmeT110I	CYCGRG	2 cut(s)	426, 432
BmgT120I	GGNCC	2 cut(s)	240, 569
BmiI	GGNNCC	5 cut(s)	104, 466, 508, 571, 837
BmrFI	CCNGG	3 cut(s)	253, 306, 653
BmsI	GCATC	2 cut(s)	366, 809
BpuEI	CTTGAG	1 cut(s)	496
BpuMI	CCSGG	1 cut(s)	653
BsaJI	CCNNGG	3 cut(s)	305, 520, 828
BsaXI	ACNNNNNCTCC	2 cut(s)	667, 697
Bse118I	RCCGGY	1 cut(s)	547
Bse1I	ACTGG	3 cut(s)	129, 398, 536
BseBI	CCWGG	2 cut(s)	253, 306
BseDI	CCNNGG	3 cut(s)	305, 520, 828
BseGI	GGATG	2 cut(s)	22, 357
BseMII	CTCAG	2 cut(s)	169, 864
BseNI	ACTGG	3 cut(s)	129, 398, 536
BseSI	GKGCMC	3 cut(s)	97, 107, 509
BseXI	GCAGC	4 cut(s)	22, 127, 400, 799
BsgI	GTGCAG	1 cut(s)	126
Bsh1285I	CGRYCG	1 cut(s)	391
BshFI	GGCC	5 cut(s)	128, 570, 656, 701, 878
BshNI	GGYRCC	2 cut(s)	102, 506
BsiEI	CGRYCG	1 cut(s)	391
BsiHKAI	GWGCWC	1 cut(s)	97
BsiHKCI	CYCGRG	2 cut(s)	426, 432
BsiSI	CCGG	3 cut(s)	54, 548, 653
BslFI	GGGAC	1 cut(s)	635
BsmAI	GTCTC	2 cut(s)	81, 687
BsmFI	GGGAC	1 cut(s)	635
BsnI	GGCC	5 cut(s)	128, 570, 656, 701, 878
BsoBI	CYCGRG	2 cut(s)	426, 432
Bsp1286I	GDGCHC	4 cut(s)	97, 107, 433, 509
Bsp143I	GATC	4 cut(s)	151, 201, 273, 388
Bsp19I	CCATGG	1 cut(s)	520
BspACI	CCGC	7 cut(s)	100, 294, 317, 514, 545, 604, 702
BspANI	GGCC	5 cut(s)	128, 570, 656, 701, 878
BspCNI	CTCAG	2 cut(s)	168, 865
BspLI	GGNNCC	5 cut(s)	104, 466, 508, 571, 837
BspPI	GGATC	1 cut(s)	196
BspT107I	GGYRCC	2 cut(s)	102, 506
BsrFI	RCCGGY	1 cut(s)	547
BsrI	ACTGG	3 cut(s)	129, 398, 536
BssAI	RCCGGY	1 cut(s)	547
BssECI	CCNNGG	3 cut(s)	305, 520, 828
BssMI	GATC	4 cut(s)	151, 201, 273, 388
BssT1I	CCWWGG	2 cut(s)	520, 828
Bst2UI	CCWGG	2 cut(s)	253, 306
Bst4CI	ACNGT	2 cut(s)	114, 717
Bst6I	CTCTTC	1 cut(s)	166
BstAPI	GCANNNNNTGC	2 cut(s)	363, 422
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	4 cut(s)	155, 765, 846, 873
BstDSI	CCRYGG	1 cut(s)	520
BstF5I	GGATG	2 cut(s)	22, 357
BstHHI	GCGC	1 cut(s)	787
BstKTI	GATC	4 cut(s)	154, 204, 276, 391
BstMAI	GTCTC	2 cut(s)	81, 687
BstMBI	GATC	4 cut(s)	151, 201, 273, 388
BstMCI	CGRYCG	1 cut(s)	391
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 363, 422, 513
BstNI	CCWGG	2 cut(s)	253, 306
BstNSI	RCATGY	1 cut(s)	425
BstSCI	CCNGG	3 cut(s)	251, 304, 651
BstSFI	CTRYAG	1 cut(s)	705
BstSLI	GKGCMC	3 cut(s)	97, 107, 509
BstV1I	GCAGC	4 cut(s)	22, 127, 400, 799
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BsuRI	GGCC	5 cut(s)	128, 570, 656, 701, 878
BtgI	CCRYGG	1 cut(s)	520
BtsCI	GGATG	2 cut(s)	22, 357
BtsI	GCAGTG	1 cut(s)	749
BtsIMutI	CAGTG	3 cut(s)	543, 657, 749
Cac8I	GCNNGC	1 cut(s)	138
CfoI	GCGC	1 cut(s)	787
Cfr10I	RCCGGY	1 cut(s)	547
Cfr13I	GGNCC	2 cut(s)	240, 569
CseI	GACGC	1 cut(s)	27
Csp6I	GTAC	2 cut(s)	492, 857
CviAII	CATG	3 cut(s)	380, 422, 521
CviQI	GTAC	2 cut(s)	492, 857
DdeI	CTNAG	4 cut(s)	155, 765, 846, 873
DpnI	GATC	4 cut(s)	153, 203, 275, 390
DpnII	GATC	4 cut(s)	151, 201, 273, 388
DrdI	GACNNNNNNGTC	1 cut(s)	247
DseDI	GACNNNNNNGTC	1 cut(s)	247
EaeI	YGGCCR	2 cut(s)	126, 654
Eam1104I	CTCTTC	1 cut(s)	166
EarI	CTCTTC	1 cut(s)	166
EciI	GGCGGA	2 cut(s)	283, 534
Eco130I	CCWWGG	2 cut(s)	520, 828
Eco147I	AGGCCT	1 cut(s)	878
Eco24I	GRGCYC	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	240
Eco57I	CTGAAG	2 cut(s)	151, 831
Eco88I	CYCGRG	2 cut(s)	426, 432
EcoRII	CCWGG	2 cut(s)	251, 304
EcoT14I	CCWWGG	2 cut(s)	520, 828
EcoT22I	ATGCAT	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	433
ErhI	CCWWGG	2 cut(s)	520, 828
FaeI	CATG	3 cut(s)	383, 425, 524
FaqI	GGGAC	1 cut(s)	635
FatI	CATG	3 cut(s)	379, 421, 520
FauI	CCCGC	1 cut(s)	597
Fnu4HI	GCNGC	5 cut(s)	36, 141, 414, 702, 788
FokI	GGATG	2 cut(s)	29, 364
FriOI	GRGCYC	1 cut(s)	433
Fsp4HI	GCNGC	5 cut(s)	36, 141, 414, 702, 788
FspBI	CTAG	2 cut(s)	87, 734
GlaI	GCGC	1 cut(s)	786
GluI	GCNGC	5 cut(s)	36, 141, 414, 702, 788
HaeIII	GGCC	5 cut(s)	128, 570, 656, 701, 878
HapII	CCGG	3 cut(s)	54, 548, 653
HgaI	GACGC	1 cut(s)	27
HhaI	GCGC	1 cut(s)	787
Hin1II	CATG	3 cut(s)	383, 425, 524
Hin6I	GCGC	1 cut(s)	785
HinP1I	GCGC	1 cut(s)	785
HinfI	GANTC	1 cut(s)	162
HpaII	CCGG	3 cut(s)	54, 548, 653
HphI	GGTGA	1 cut(s)	705
Hpy166II	GTNNAC	2 cut(s)	95, 713
Hpy188I	TCNGA	6 cut(s)	84, 158, 170, 375, 805, 874
Hpy188III	TCNNGA	3 cut(s)	199, 349, 582
Hpy8I	GTNNAC	2 cut(s)	95, 713
HpyAV	CCTTC	2 cut(s)	337, 520
HpyCH4III	ACNGT	2 cut(s)	114, 717
HpyCH4IV	ACGT	2 cut(s)	270, 586
HpyCH4V	TGCA	7 cut(s)	95, 143, 357, 379, 416, 488, 529
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 363, 422, 513
HpyF3I	CTNAG	4 cut(s)	155, 765, 846, 873
HpySE526I	ACGT	2 cut(s)	270, 586
Hsp92II	CATG	3 cut(s)	383, 425, 524
HspAI	GCGC	1 cut(s)	785
Kzo9I	GATC	4 cut(s)	151, 201, 273, 388
LmnI	GCTCC	3 cut(s)	296, 826, 835
Lsp1109I	GCAGC	4 cut(s)	22, 127, 400, 799
LweI	GCATC	2 cut(s)	366, 809
MaeI	CTAG	2 cut(s)	87, 734
MaeII	ACGT	2 cut(s)	270, 586
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	4 cut(s)	153, 203, 275, 390
MboI	GATC	4 cut(s)	151, 201, 273, 388
MboII	GAAGA	3 cut(s)	157, 183, 907
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	4 cut(s)	97, 107, 433, 509
MlsI	TGGCCA	1 cut(s)	128
MluNI	TGGCCA	1 cut(s)	128
MmeI	TCCRAC	2 cut(s)	785, 890
Mox20I	TGGCCA	1 cut(s)	128
Mph1103I	ATGCAT	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	1 cut(s)	483
MslI	CAYNNNNRTG	1 cut(s)	100
Msp20I	TGGCCA	1 cut(s)	128
MspA1I	CMGCKG	2 cut(s)	100, 704
MspI	CCGG	3 cut(s)	54, 548, 653
MspR9I	CCNGG	3 cut(s)	253, 306, 653
MvaI	CCWGG	2 cut(s)	253, 306
MwoI	GCNNNNNNNGC	4 cut(s)	44, 363, 422, 513
NciI	CCSGG	1 cut(s)	653
NcoI	CCATGG	1 cut(s)	520
NdeII	GATC	4 cut(s)	151, 201, 273, 388
NlaIII	CATG	3 cut(s)	383, 425, 524
NlaIV	GGNNCC	5 cut(s)	104, 466, 508, 571, 837
NmuCI	GTSAC	1 cut(s)	19
NsiI	ATGCAT	1 cut(s)	381
NspI	RCATGY	1 cut(s)	425
OliI	CACNNNNGTG	1 cut(s)	100
PaeR7I	CTCGAG	1 cut(s)	426
PceI	AGGCCT	1 cut(s)	878
PfeI	GAWTC	1 cut(s)	162
PkrI	GCNGC	5 cut(s)	37, 142, 415, 703, 789
Ple19I	CGATCG	1 cut(s)	391
Psp6I	CCWGG	2 cut(s)	251, 304
PspGI	CCWGG	2 cut(s)	251, 304
PspN4I	GGNNCC	5 cut(s)	104, 466, 508, 571, 837
PspPI	GGNCC	2 cut(s)	240, 569
PspXI	VCTCGAGB	1 cut(s)	426
PsuI	RGATCY	1 cut(s)	201
PvuI	CGATCG	1 cut(s)	391
RsaI	GTAC	2 cut(s)	493, 858
RsaNI	GTAC	2 cut(s)	492, 857
RseI	CAYNNNNRTG	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	5 cut(s)	36, 141, 414, 702, 788
Sau3AI	GATC	4 cut(s)	151, 201, 273, 388
Sau96I	GGNCC	2 cut(s)	240, 569
ScaI	AGTACT	1 cut(s)	493
ScrFI	CCNGG	3 cut(s)	253, 306, 653
SduI	GDGCHC	4 cut(s)	97, 107, 433, 509
SfaNI	GCATC	2 cut(s)	366, 809
SfcI	CTRYAG	1 cut(s)	705
Sfr274I	CTCGAG	1 cut(s)	426
SinI	GGWCC	1 cut(s)	240
SlaI	CTCGAG	1 cut(s)	426
SmiMI	CAYNNNNRTG	1 cut(s)	100
SmlI	CTYRAG	2 cut(s)	426, 475
SmoI	CTYRAG	2 cut(s)	426, 475
SseBI	AGGCCT	1 cut(s)	878
SsiI	CCGC	7 cut(s)	100, 294, 317, 514, 545, 604, 702
SspMI	CTAG	2 cut(s)	87, 734
StuI	AGGCCT	1 cut(s)	878
StyD4I	CCNGG	3 cut(s)	251, 304, 651
StyI	CCWWGG	2 cut(s)	520, 828
TaaI	ACNGT	2 cut(s)	114, 717
TaiI	ACGT	2 cut(s)	273, 589
TaqI	TCGA	2 cut(s)	276, 427
TatI	WGTACW	1 cut(s)	491
TauI	GCSGC	1 cut(s)	704
TfiI	GAWTC	1 cut(s)	162
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	3 cut(s)	543, 664, 756
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	4 cut(s)	35, 140, 413, 787
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	2 cut(s)	459, 487
TspRI	CASTG	3 cut(s)	543, 664, 756
VneI	GTGCAC	1 cut(s)	93
VpaK11BI	GGWCC	1 cut(s)	240
XceI	RCATGY	1 cut(s)	425
XhoI	CTCGAG	1 cut(s)	426
XspI	CTAG	2 cut(s)	87, 734
ZrmI	AGTACT	1 cut(s)	493
Zsp2I	ATGCAT	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.