Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001481

Physical Location & Seq

Genomic Coordinates Forward (+)

72479871 .. 72480890

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021161

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGACCACTCGAGCAGCACTGAGCTCGAAAGAATATTATCCGACACAGATAGGTTGTTCTTGCAGCGTCTCAAACCTGCTCTATGGATCGAGTCGAAGCTCCTTTTTCTTCCTCGCCGGTCCGGCAGTGGTCGTCTACATGATCAACTACGTTATGTCCATGTCCACCCAAATCTTCTCCGGCCACCTTGGTAATCTTGAGCTCGCCGCTGCTTCTCTCGGAAACAATGGAATCCATCTGTTCGCCTATGGCCTCATGTTAGGCATGGGAAGTGCCGTGGAGACGCTAGGTGGACAAGCATATGGAGCTCAAAAGGACGAAATGCTAGGCATATATCTACAAAGATCAACCATCCTCCTAATGTCGGTCGGTTTCCTCCTCACCTTGGTCTACATCTTCTCAGAACCAGCTCTAATCTTTCTCTGCGAGTCCCCGAGAATCGCCTCCGCCACCGCCGTTTACGTCTACGGCCTTATCCCTCAAATCTTTGCCTACGCCGTCAACTTCCCGATCCAGAAGTTCCTCCAAGCTCAAAGCATGGTGACTCCAAGTGCATACATATCAGCAATAACACTAGCCGTACACCTCTTGCTGAGCTGGGTGGTGGTGTACAAGATTGGGCTTGGGCTACTGGGCGCGTCGCTGGTGCTCAGCCTGTCATGGTGGATCACTGTGGTGGCGCAGTTTGTATATATCGTGAAGAGCGAGAGGTGCAGGCACACGTGGAGCGGTTTTACGTGGCAAGCGTTCACCGGGTTGTATGGATTCCTCAAATTATCGGTGGCGTCTGCAGTGATGCTTTGTTTAGAGACGTGGTATTTTCAGATTCTGGTTCTGCTGGCTGGCTTGCTGGAAAATCCTGAGTTGGCTATTGACTCGCTCGCGATTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0016020 GO:0022857 GO:0031090 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

298

Amino Acids

32.49

Weight (kDa)

6.88

Isoelectric Point (pI)

28.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	41 - 201	7.4e-31	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21690
fragaria_vesca	FvH4_3g02250 FvH4_3g02250 FvH4_6g43220 FvH4_6g43220
malus_domestica	MD05G1344500.v1.1 MD05G1344900.v1.1 MD09G1108500.v1.1 MD17G1096400.v1.1
prunus_persica	Prupe.3G217600_v2.0.a1 Prupe.3G217600_v2.0.a1 Prupe.3G217600_v2.0.a1 Prupe.4G021900_v2.0.a1
pyrus_communis	pycom05g31380 pycom09g03100 pycom17g09250
rosa_chinensis	RchiOBHm_Chr2g0159351 RchiOBHm_Chr2g0159471 RchiOBHm_Chr5g0003321 RchiOBHm_Chr5g0003371
rosa_laevigata	RLG00000021157 RLG00000021161 RLG00000031126 RLG00000031130
rosa_multiflora	Rmu_sc0004800.1_g000007 Rmu_sc0006842.1_g000002 Rmu_sc0007710.1_g000003 Rmu_sc0010917.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072650
rosa_rugosa	Rorug02G0475900 Rorug02G0476200 Rorug02G0476300 Rorug02G0476500 Rorug02G0476600 Rorug02G0476700 Rorug04G0402700.1 Rorug04G0402800
rosa_samantha	Rh2AG542800 Rh2AG543100 Rh2BG555300 Rh2BG555800 Rh2DG564900 Rh2DG565200 Rh5AG028800 Rh5BG028900 Rh5DG029400
rosa_wichuraiana	Rw2G044870 Rw2G044920 Rw5G002370 Rw5G002680 Rw5G002730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	84
AccBSI	CCGCTC	1 cut(s)	729
AccI	GTMKAC	3 cut(s)	135, 390, 465
AccII	CGCG	2 cut(s)	638, 884
AciI	CCGC	4 cut(s)	207, 447, 453, 729
AclWI	GGATC	3 cut(s)	94, 505, 674
AcoI	YGGCCR	1 cut(s)	181
AcvI	CACGTG	1 cut(s)	723
AcyI	GRCGYC	1 cut(s)	785
AfaI	GTAC	2 cut(s)	582, 611
AfiI	CCNNNNNNNGG	2 cut(s)	364, 385
AflIII	ACRYGT	1 cut(s)	720
AjiI	CACGTC	1 cut(s)	813
AleI	CACNNNNGTG	1 cut(s)	674
AluBI	AGCT	7 cut(s)	24, 99, 202, 308, 410, 530, 597
AluI	AGCT	7 cut(s)	24, 99, 202, 308, 410, 530, 597
Alw21I	GWGCWC	4 cut(s)	26, 204, 310, 651
Alw26I	GTCTC	3 cut(s)	73, 275, 803
AlwI	GGATC	3 cut(s)	94, 505, 674
AlwNI	CAGNNNCTG	1 cut(s)	829
Ama87I	CYCGRG	2 cut(s)	9, 433
AoxI	GGCC	3 cut(s)	181, 250, 469
ApeKI	GCWGC	3 cut(s)	14, 63, 209
AspLEI	GCGC	2 cut(s)	638, 682
AspS9I	GGNCC	1 cut(s)	119
AsuC2I	CCSGG	1 cut(s)	754
AsuHPI	GGTGA	3 cut(s)	373, 553, 742
AvaI	CYCGRG	2 cut(s)	9, 433
AvaII	GGWCC	1 cut(s)	119
BanII	GRGCYC	3 cut(s)	26, 204, 310
BbrPI	CACGTG	1 cut(s)	723
Bbv12I	GWGCWC	4 cut(s)	26, 204, 310, 651
BbvI	GCAGC	3 cut(s)	26, 75, 196
BccI	CCATC	2 cut(s)	243, 359
BceAI	ACGGC	5 cut(s)	260, 440, 482, 484, 563
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BclI	TGATCA	1 cut(s)	141
BcnI	CCSGG	1 cut(s)	754
BcoDI	GTCTC	3 cut(s)	73, 275, 803
BfaI	CTAG	3 cut(s)	287, 326, 575
BfmI	CTRYAG	1 cut(s)	789
BfuAI	ACCTGC	1 cut(s)	84
BglI	GCCNNNNNGGC	1 cut(s)	122
BisI	GCNGC	4 cut(s)	15, 64, 207, 210
BlpI	GCTNAGC	2 cut(s)	593, 650
BlsI	GCNGC	4 cut(s)	16, 65, 208, 211
Bme1390I	CCNGG	1 cut(s)	754
Bme18I	GGWCC	1 cut(s)	119
BmeT110I	CYCGRG	2 cut(s)	9, 433
BmgBI	CACGTC	1 cut(s)	813
BmgT120I	GGNCC	1 cut(s)	119
BmrFI	CCNGG	1 cut(s)	754
BmrI	ACTGGG	1 cut(s)	641
BmsI	GCATC	1 cut(s)	786
BmuI	ACTGGG	1 cut(s)	641
Bpu1102I	GCTNAGC	2 cut(s)	593, 650
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	754
BsaAI	YACGTR	2 cut(s)	723, 738
BsaHI	GRCGYC	1 cut(s)	785
BsaJI	CCNNGG	3 cut(s)	187, 276, 384
Bsc4I	CCNNNNNNNGG	2 cut(s)	364, 385
Bse118I	RCCGGY	1 cut(s)	116
Bse1I	ACTGG	1 cut(s)	636
BseDI	CCNNGG	3 cut(s)	187, 276, 384
BseGI	GGATG	1 cut(s)	351
BseLI	CCNNNNNNNGG	2 cut(s)	364, 385
BseMII	CTCAG	5 cut(s)	11, 414, 584, 664, 852
BseNI	ACTGG	1 cut(s)	636
BseRI	GAGGAG	1 cut(s)	368
BseXI	GCAGC	3 cut(s)	26, 75, 196
BseYI	CCCAGC	1 cut(s)	597
BsgI	GTGCAG	1 cut(s)	733
Bsh1236I	CGCG	2 cut(s)	638, 884
Bsh1285I	CGRYCG	1 cut(s)	369
BshFI	GGCC	3 cut(s)	183, 252, 471
BsiEI	CGRYCG	1 cut(s)	369
BsiHKAI	GWGCWC	4 cut(s)	26, 204, 310, 651
BsiHKCI	CYCGRG	2 cut(s)	9, 433
BsiSI	CCGG	4 cut(s)	117, 122, 180, 753
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	2 cut(s)	364, 385
BsmAI	GTCTC	3 cut(s)	73, 275, 803
BsmBI	CGTCTC	3 cut(s)	73, 275, 803
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	3 cut(s)	183, 252, 471
BsoBI	CYCGRG	2 cut(s)	9, 433
Bsp1286I	GDGCHC	4 cut(s)	26, 204, 310, 651
Bsp1407I	TGTACA	1 cut(s)	609
Bsp143I	GATC	5 cut(s)	86, 141, 344, 510, 666
Bsp1720I	GCTNAGC	2 cut(s)	593, 650
Bsp68I	TCGCGA	1 cut(s)	884
BspACI	CCGC	4 cut(s)	207, 447, 453, 729
BspANI	GGCC	3 cut(s)	183, 252, 471
BspCNI	CTCAG	5 cut(s)	12, 413, 585, 663, 853
BspFNI	CGCG	2 cut(s)	638, 884
BspMAI	CTGCAG	1 cut(s)	793
BspMI	ACCTGC	1 cut(s)	84
BspPI	GGATC	3 cut(s)	94, 505, 674
BspQI	GCTCTTC	1 cut(s)	695
BsrBI	CCGCTC	1 cut(s)	729
BsrFI	RCCGGY	1 cut(s)	116
BsrGI	TGTACA	1 cut(s)	609
BsrI	ACTGG	1 cut(s)	636
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	3 cut(s)	187, 276, 384
BssMI	GATC	5 cut(s)	86, 141, 344, 510, 666
BssNI	GRCGYC	1 cut(s)	785
BssT1I	CCWWGG	2 cut(s)	187, 384
Bst4CI	ACNGT	1 cut(s)	673
Bst6I	CTCTTC	1 cut(s)	695
BstACI	GRCGYC	1 cut(s)	785
BstAUI	TGTACA	1 cut(s)	609
BstBAI	YACGTR	2 cut(s)	723, 738
BstC8I	GCNNGC	7 cut(s)	204, 716, 744, 840, 844, 848, 882
BstDEI	CTNAG	5 cut(s)	20, 400, 593, 650, 861
BstDSI	CCRYGG	1 cut(s)	276
BstF5I	GGATG	1 cut(s)	351
BstFNI	CGCG	2 cut(s)	638, 884
BstHHI	GCGC	2 cut(s)	638, 682
BstKTI	GATC	5 cut(s)	89, 144, 347, 513, 669
BstMAI	GTCTC	3 cut(s)	73, 275, 803
BstMBI	GATC	5 cut(s)	86, 141, 344, 510, 666
BstMCI	CGRYCG	1 cut(s)	369
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 305, 711
BstSCI	CCNGG	1 cut(s)	752
BstSFI	CTRYAG	1 cut(s)	789
BstUI	CGCG	2 cut(s)	638, 884
BstV1I	GCAGC	3 cut(s)	26, 75, 196
BsuRI	GGCC	3 cut(s)	183, 252, 471
BtgI	CCRYGG	1 cut(s)	276
BtrI	CACGTC	1 cut(s)	813
BtsCI	GGATG	1 cut(s)	351
BtsI	GCAGTG	2 cut(s)	132, 798
BtsIMutI	CAGTG	4 cut(s)	17, 132, 669, 798
BtuMI	TCGCGA	1 cut(s)	884
BveI	ACCTGC	1 cut(s)	84
Cac8I	GCNNGC	7 cut(s)	204, 716, 744, 840, 844, 848, 882
CaiI	CAGNNNCTG	1 cut(s)	829
CfoI	GCGC	2 cut(s)	638, 682
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	119
CpoI	CGGWCCG	1 cut(s)	119
CseI	GACGC	4 cut(s)	55, 292, 627, 774
Csp6I	GTAC	2 cut(s)	581, 610
CspI	CGGWCCG	1 cut(s)	119
CviAII	CATG	6 cut(s)	139, 160, 256, 265, 538, 660
CviQI	GTAC	2 cut(s)	581, 610
DdeI	CTNAG	5 cut(s)	20, 400, 593, 650, 861
DpnI	GATC	5 cut(s)	88, 143, 346, 512, 668
DpnII	GATC	5 cut(s)	86, 141, 344, 510, 666
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	695
EarI	CTCTTC	1 cut(s)	695
EciI	GGCGGA	1 cut(s)	436
Ecl136II	GAGCTC	3 cut(s)	24, 202, 308
Eco130I	CCWWGG	2 cut(s)	187, 384
Eco24I	GRGCYC	3 cut(s)	26, 204, 310
Eco47I	GGWCC	1 cut(s)	119
Eco53kI	GAGCTC	3 cut(s)	24, 202, 308
Eco72I	CACGTG	1 cut(s)	723
Eco88I	CYCGRG	2 cut(s)	9, 433
EcoICRI	GAGCTC	3 cut(s)	24, 202, 308
EcoT14I	CCWWGG	2 cut(s)	187, 384
EcoT38I	GRGCYC	3 cut(s)	26, 204, 310
ErhI	CCWWGG	2 cut(s)	187, 384
Esp3I	CGTCTC	3 cut(s)	73, 275, 803
FaeI	CATG	6 cut(s)	142, 163, 259, 268, 541, 663
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	6 cut(s)	138, 159, 255, 264, 537, 659
FauNDI	CATATG	1 cut(s)	301
FbaI	TGATCA	1 cut(s)	141
FblI	GTMKAC	3 cut(s)	135, 390, 465
Fnu4HI	GCNGC	4 cut(s)	15, 64, 207, 210
FokI	GGATG	1 cut(s)	338
FriOI	GRGCYC	3 cut(s)	26, 204, 310
Fsp4HI	GCNGC	4 cut(s)	15, 64, 207, 210
FspBI	CTAG	3 cut(s)	287, 326, 575
GlaI	GCGC	2 cut(s)	637, 681
GluI	GCNGC	4 cut(s)	15, 64, 207, 210
GsaI	CCCAGC	1 cut(s)	601
HaeIII	GGCC	3 cut(s)	183, 252, 471
HapII	CCGG	4 cut(s)	117, 122, 180, 753
HgaI	GACGC	4 cut(s)	55, 292, 627, 774
HhaI	GCGC	2 cut(s)	638, 682
Hin1I	GRCGYC	1 cut(s)	785
Hin1II	CATG	6 cut(s)	142, 163, 259, 268, 541, 663
Hin6I	GCGC	2 cut(s)	636, 680
HinP1I	GCGC	2 cut(s)	636, 680
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HinfI	GANTC	8 cut(s)	91, 231, 428, 438, 544, 765, 826, 875
HpaII	CCGG	4 cut(s)	117, 122, 180, 753
HphI	GGTGA	3 cut(s)	373, 553, 742
Hpy188I	TCNGA	4 cut(s)	42, 221, 403, 825
Hpy188III	TCNNGA	6 cut(s)	197, 508, 514, 697, 860, 883
Hpy99I	CGWCG	1 cut(s)	643
HpyCH4III	ACNGT	1 cut(s)	673
HpyCH4IV	ACGT	5 cut(s)	150, 462, 722, 737, 812
HpyCH4V	TGCA	4 cut(s)	63, 554, 714, 791
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 305, 711
HpyF3I	CTNAG	5 cut(s)	20, 400, 593, 650, 861
HpySE526I	ACGT	5 cut(s)	150, 462, 722, 737, 812
Hsp92I	GRCGYC	1 cut(s)	785
Hsp92II	CATG	6 cut(s)	142, 163, 259, 268, 541, 663
HspAI	GCGC	2 cut(s)	636, 680
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	5 cut(s)	86, 141, 344, 510, 666
LguI	GCTCTTC	1 cut(s)	695
LmnI	GCTCC	3 cut(s)	104, 305, 726
Lsp1109I	GCAGC	3 cut(s)	26, 75, 196
LweI	GCATC	1 cut(s)	786
MaeI	CTAG	3 cut(s)	287, 326, 575
MaeII	ACGT	5 cut(s)	150, 462, 722, 737, 812
MaeIII	GTNAC	1 cut(s)	541
MalI	GATC	5 cut(s)	88, 143, 346, 512, 668
MbiI	CCGCTC	1 cut(s)	729
MboI	GATC	5 cut(s)	86, 141, 344, 510, 666
MboII	GAAGA	4 cut(s)	100, 166, 388, 712
MhlI	GDGCHC	4 cut(s)	26, 204, 310, 651
MluCI	AATT	1 cut(s)	773
MlyI	GAGTC	4 cut(s)	100, 437, 538, 869
MmeI	TCCRAC	1 cut(s)	65
MslI	CAYNNNNRTG	1 cut(s)	674
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	4 cut(s)	117, 122, 180, 753
MspR9I	CCNGG	1 cut(s)	754
MvnI	CGCG	2 cut(s)	638, 884
MwoI	GCNNNNNNNGC	3 cut(s)	122, 305, 711
NciI	CCSGG	1 cut(s)	754
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	5 cut(s)	86, 141, 344, 510, 666
NlaIII	CATG	6 cut(s)	142, 163, 259, 268, 541, 663
NmuCI	GTSAC	1 cut(s)	541
NruI	TCGCGA	1 cut(s)	884
OliI	CACNNNNGTG	1 cut(s)	674
PaeR7I	CTCGAG	1 cut(s)	9
PciSI	GCTCTTC	1 cut(s)	695
PcsI	WCGNNNNNNNCGW	2 cut(s)	702, 743
PfeI	GAWTC	4 cut(s)	231, 438, 765, 826
PkrI	GCNGC	4 cut(s)	16, 65, 208, 211
PleI	GAGTC	4 cut(s)	99, 436, 538, 869
PmaCI	CACGTG	1 cut(s)	723
PmlI	CACGTG	1 cut(s)	723
PpsI	GAGTC	4 cut(s)	99, 436, 538, 869
Ppu21I	YACGTR	2 cut(s)	723, 738
Psp124BI	GAGCTC	3 cut(s)	26, 204, 310
PspCI	CACGTG	1 cut(s)	723
PspFI	CCCAGC	1 cut(s)	597
PspPI	GGNCC	1 cut(s)	119
PspXI	VCTCGAGB	1 cut(s)	9
PstI	CTGCAG	1 cut(s)	793
PstNI	CAGNNNCTG	1 cut(s)	829
RruI	TCGCGA	1 cut(s)	884
RsaI	GTAC	2 cut(s)	582, 611
RsaNI	GTAC	2 cut(s)	581, 610
RseI	CAYNNNNRTG	1 cut(s)	674
Rsr2I	CGGWCCG	1 cut(s)	119
RsrII	CGGWCCG	1 cut(s)	119
SacI	GAGCTC	3 cut(s)	26, 204, 310
SapI	GCTCTTC	1 cut(s)	695
SatI	GCNGC	4 cut(s)	15, 64, 207, 210
Sau3AI	GATC	5 cut(s)	86, 141, 344, 510, 666
Sau96I	GGNCC	1 cut(s)	119
SchI	GAGTC	4 cut(s)	100, 437, 538, 869
ScrFI	CCNGG	1 cut(s)	754
SduI	GDGCHC	4 cut(s)	26, 204, 310, 651
SfaNI	GCATC	1 cut(s)	786
SfcI	CTRYAG	1 cut(s)	789
Sfr274I	CTCGAG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	119
SlaI	CTCGAG	1 cut(s)	9
SmiMI	CAYNNNNRTG	1 cut(s)	674
SmlI	CTYRAG	2 cut(s)	9, 197
SmoI	CTYRAG	2 cut(s)	9, 197
Sse9I	AATT	1 cut(s)	773
SsiI	CCGC	4 cut(s)	207, 447, 453, 729
SspI	AATATT	1 cut(s)	35
SspMI	CTAG	3 cut(s)	287, 326, 575
SstI	GAGCTC	3 cut(s)	26, 204, 310
StyD4I	CCNGG	1 cut(s)	752
StyI	CCWWGG	2 cut(s)	187, 384
TaaI	ACNGT	1 cut(s)	673
TaiI	ACGT	5 cut(s)	153, 465, 725, 740, 815
TaqI	TCGA	4 cut(s)	10, 26, 89, 94
TaqII	GACCGA	1 cut(s)	355
TasI	AATT	1 cut(s)	773
TatI	WGTACW	1 cut(s)	609
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	4 cut(s)	231, 438, 765, 826
TscAI	CASTG	4 cut(s)	24, 132, 676, 798
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	3 cut(s)	14, 63, 209
Tsp45I	GTSAC	1 cut(s)	541
TspRI	CASTG	4 cut(s)	24, 132, 676, 798
VpaK11BI	GGWCC	1 cut(s)	119
XhoI	CTCGAG	1 cut(s)	9
XmiI	GTMKAC	3 cut(s)	135, 390, 465
XspI	CTAG	3 cut(s)	287, 326, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.