pycom09g03100

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
2300302 .. 2301618
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g03100.1

Sequence Viewer

Length: 900 bp
ATGCTCACGAAGAGCATGCAAGCGGCGAGCTGGAACAAGTACTATGCGACACCGGCAAGCCGTTTTCACAGCGGCTTAAACCCGCCCTATGGATCGAGTCCAAGCTCCTCGTCGTCCTCGCCGCCCCTGCCATCATCGTGTACATCGATCAACTATGTCATGTCCATGTCCACCCAAATGTTTTGCGGCCACCTCGGTAATCTCGAGCTCGCCGCCTCCTCCCTCGGCAACAATGGCATCCAAATCTTCGCCTATGGTCTTTTGTTAGGTATGGGAAGCGCAGTGGAAACCCTATGTGGACAAGCATACGGTGCCCAAAAGTACGAAATGTTAGGCATATACCTACAAAGATCAGCAGTCCTCCTATTTTTCCCTGGTGTACTCCTCACCATTATTTACGTCTTCTCCGAACCAATCTTGCTTTTACTTGGTGAATCTCCGAGCATTGCTTCTTCAGCTGCAGTTTATGTGTACGGACTGATCCCTCAGATCTTTGCCTACGTTGTCAACTTCCCGATCCAAAAGTTCATGCAATCTCAAAGCATAGTTGCCCCAAGTGCTTATATATCGACTGGAACCCTAGTTATCCACATTTTGCTCAGCTGGGTTGCTGTGTACAAATTGGGGTTGGGTTTGCTGGGTGCGTCGCTGGTGCTCAGTCTGTCATGGTGGATCACCGTGGTGGCACAGTTCGTGTACATTGTTAAGAGTGACAGGTGTAAGAACACGTGGACACGGTTTTCGTGGCAAGCTTTCAGCGGATTGTACAGTTTTTTCAAGTTGTCTGTGGCGTCTGCTATCATGCTTTGCCTGGAGACGTGGTACTTTCAGATTCTTGTTTTGCTTGCTGGGTTGCTGGAAAACCCTGAGCTGGCCCTTGACTCCCTCTCCATCTGGTAA

Protein Analysis

300

Amino Acids

32.63

Weight (kDa)

8.2

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 50 - 203 2e-34 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 311
AciI CCGC 7 cut(s) 23, 72, 83, 122, 186, 213, 759
AclWI GGATC 4 cut(s) 100, 475, 511, 680
AcoI YGGCCR 1 cut(s) 187
AcuI CTGAAG 1 cut(s) 438
AcvI CACGTG 1 cut(s) 729
AcyI GRCGYC 1 cut(s) 791
AfaI GTAC 9 cut(s) 41, 142, 323, 381, 473, 617, 698, 767, 824
AfiI CCNNNNNNNGG 2 cut(s) 89, 871
AflIII ACRYGT 1 cut(s) 726
AgsI TTSAA 1 cut(s) 778
AjiI CACGTC 1 cut(s) 819
AjnI CCWGG 2 cut(s) 373, 810
AleI CACNNNNGTG 1 cut(s) 680
AluBI AGCT 7 cut(s) 30, 105, 208, 458, 603, 752, 871
AluI AGCT 7 cut(s) 30, 105, 208, 458, 603, 752, 871
Alw21I GWGCWC 2 cut(s) 210, 657
Alw26I GTCTC 1 cut(s) 809
AlwI GGATC 4 cut(s) 100, 475, 511, 680
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 2 cut(s) 187, 873
ApeKI GCWGC 1 cut(s) 458
ArsI GACNNNNNNTTYG 2 cut(s) 724, 756
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 874
AsuHPI GGTGA 3 cut(s) 379, 443, 667
AvaI CYCGRG 1 cut(s) 203
BaeGI GKGCMC 1 cut(s) 316
BanI GGYRCC 1 cut(s) 311
BanII GRGCYC 1 cut(s) 210
BbrPI CACGTG 1 cut(s) 729
BbsI GAAGAC 1 cut(s) 394
Bbv12I GWGCWC 2 cut(s) 210, 657
BbvI GCAGC 1 cut(s) 445
BccI CCATC 2 cut(s) 139, 899
BceAI ACGGC 1 cut(s) 45
BcgI CGANNNNNNTGC 1 cut(s) 32
BciT130I CCWGG 2 cut(s) 375, 812
BcoDI GTCTC 1 cut(s) 809
BfaI CTAG 1 cut(s) 581
BfmI CTRYAG 1 cut(s) 459
BglII AGATCT 1 cut(s) 489
BisI GCNGC 6 cut(s) 24, 73, 122, 187, 213, 459
BlpI GCTNAGC 1 cut(s) 599
BlsI GCNGC 6 cut(s) 25, 74, 123, 188, 214, 460
BmcAI AGTACT 1 cut(s) 41
Bme1390I CCNGG 2 cut(s) 375, 812
BmeT110I CYCGRG 1 cut(s) 203
BmgBI CACGTC 1 cut(s) 819
BmgT120I GGNCC 1 cut(s) 874
BmiI GGNNCC 2 cut(s) 313, 577
BmrFI CCNGG 2 cut(s) 375, 812
BmsI GCATC 1 cut(s) 246
BpiI GAAGAC 1 cut(s) 394
BpmI CTGGAG 1 cut(s) 833
Bpu10I CCTNAGC 1 cut(s) 867
Bpu1102I GCTNAGC 1 cut(s) 599
Bsa29I ATCGAT 1 cut(s) 146
BsaAI YACGTR 1 cut(s) 729
BsaHI GRCGYC 1 cut(s) 791
BsaJI CCNNGG 4 cut(s) 193, 223, 373, 678
BsaXI ACNNNNNCTCC 5 cut(s) 389, 419, 806, 836, 872
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 871
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 577
Bse3DI GCAATG 1 cut(s) 444
BseBI CCWGG 2 cut(s) 375, 812
BseCI ATCGAT 1 cut(s) 146
BseDI CCNNGG 4 cut(s) 193, 223, 373, 678
BseGI GGATG 1 cut(s) 237
BseLI CCNNNNNNNGG 2 cut(s) 89, 871
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 4 cut(s) 500, 613, 670, 858
BseNI ACTGG 1 cut(s) 577
BseRI GAGGAG 3 cut(s) 97, 208, 374
BseSI GKGCMC 1 cut(s) 316
BseXI GCAGC 1 cut(s) 445
BseYI CCCAGC 3 cut(s) 603, 637, 848
BshFI GGCC 2 cut(s) 189, 875
BshNI GGYRCC 1 cut(s) 311
BshVI ATCGAT 1 cut(s) 146
BsiHKAI GWGCWC 2 cut(s) 210, 657
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 1 cut(s) 53
BslI CCNNNNNNNGG 2 cut(s) 89, 871
BsmAI GTCTC 1 cut(s) 809
BsmBI CGTCTC 1 cut(s) 809
BsnI GGCC 2 cut(s) 189, 875
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 3 cut(s) 210, 316, 657
Bsp1407I TGTACA 4 cut(s) 140, 615, 696, 765
Bsp143I GATC 7 cut(s) 92, 147, 350, 480, 489, 516, 672
Bsp1720I GCTNAGC 1 cut(s) 599
BspACI CCGC 7 cut(s) 23, 72, 83, 122, 186, 213, 759
BspANI GGCC 2 cut(s) 189, 875
BspCNI CTCAG 4 cut(s) 499, 612, 669, 859
BspDI ATCGAT 1 cut(s) 146
BspLI GGNNCC 2 cut(s) 313, 577
BspMAI CTGCAG 1 cut(s) 463
BspPI GGATC 4 cut(s) 100, 475, 511, 680
BspQI GCTCTTC 1 cut(s) 5
BspT107I GGYRCC 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 444
BsrFI RCCGGY 1 cut(s) 52
BsrGI TGTACA 4 cut(s) 140, 615, 696, 765
BsrI ACTGG 1 cut(s) 577
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 4 cut(s) 193, 223, 373, 678
BssMI GATC 7 cut(s) 92, 147, 350, 480, 489, 516, 672
BssNI GRCGYC 1 cut(s) 791
Bst2UI CCWGG 2 cut(s) 375, 812
Bst4CI ACNGT 5 cut(s) 311, 679, 690, 738, 770
Bst6I CTCTTC 1 cut(s) 5
BstACI GRCGYC 1 cut(s) 791
BstAPI GCANNNNNTGC 1 cut(s) 311
BstAUI TGTACA 4 cut(s) 140, 615, 696, 765
BstBAI YACGTR 1 cut(s) 729
BstC8I GCNNGC 8 cut(s) 17, 21, 28, 58, 210, 750, 846, 873
BstDEI CTNAG 4 cut(s) 486, 599, 656, 867
BstDSI CCRYGG 1 cut(s) 678
BstF5I GGATG 1 cut(s) 237
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 7 cut(s) 95, 150, 353, 483, 492, 519, 675
BstMAI GTCTC 1 cut(s) 809
BstMBI GATC 7 cut(s) 92, 147, 350, 480, 489, 516, 672
BstMWI GCNNNNNNNGC 6 cut(s) 53, 127, 234, 311, 455, 557
BstNI CCWGG 2 cut(s) 375, 812
BstNSI RCATGY 1 cut(s) 19
BstSCI CCNGG 2 cut(s) 373, 810
BstSFI CTRYAG 1 cut(s) 459
BstSLI GKGCMC 1 cut(s) 316
BstV1I GCAGC 1 cut(s) 445
BstV2I GAAGAC 1 cut(s) 394
BstX2I RGATCY 1 cut(s) 489
BstYI RGATCY 1 cut(s) 489
Bsu15I ATCGAT 1 cut(s) 146
BsuRI GGCC 2 cut(s) 189, 875
BsuTUI ATCGAT 1 cut(s) 146
BtgI CCRYGG 1 cut(s) 678
BtrI CACGTC 1 cut(s) 819
BtsCI GGATG 1 cut(s) 237
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 8 cut(s) 17, 21, 28, 58, 210, 750, 846, 873
CfoI GCGC 1 cut(s) 281
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 874
ClaI ATCGAT 1 cut(s) 146
CseI GACGC 2 cut(s) 633, 780
Csp6I GTAC 9 cut(s) 40, 141, 322, 380, 472, 616, 697, 766, 823
CviAII CATG 6 cut(s) 16, 160, 166, 529, 666, 802
CviQI GTAC 9 cut(s) 40, 141, 322, 380, 472, 616, 697, 766, 823
DdeI CTNAG 4 cut(s) 486, 599, 656, 867
DpnI GATC 7 cut(s) 94, 149, 352, 482, 491, 518, 674
DpnII GATC 7 cut(s) 92, 147, 350, 480, 489, 516, 672
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Ecl136II GAGCTC 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 210
Eco53kI GAGCTC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 438
Eco72I CACGTG 1 cut(s) 729
Eco88I CYCGRG 1 cut(s) 203
EcoICRI GAGCTC 1 cut(s) 208
EcoRII CCWGG 2 cut(s) 373, 810
EcoT38I GRGCYC 1 cut(s) 210
Esp3I CGTCTC 1 cut(s) 809
FaeI CATG 6 cut(s) 19, 163, 169, 532, 669, 805
FatI CATG 6 cut(s) 15, 159, 165, 528, 665, 801
FauI CCCGC 1 cut(s) 90
Fnu4HI GCNGC 6 cut(s) 24, 73, 122, 187, 213, 459
FokI GGATG 1 cut(s) 224
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 6 cut(s) 24, 73, 122, 187, 213, 459
FspBI CTAG 1 cut(s) 581
GlaI GCGC 1 cut(s) 280
GluI GCNGC 6 cut(s) 24, 73, 122, 187, 213, 459
GsaI CCCAGC 3 cut(s) 607, 641, 852
GsuI CTGGAG 1 cut(s) 833
HaeIII GGCC 2 cut(s) 189, 875
HapII CCGG 1 cut(s) 53
HgaI GACGC 2 cut(s) 633, 780
HhaI GCGC 1 cut(s) 281
Hin1I GRCGYC 1 cut(s) 791
Hin1II CATG 6 cut(s) 19, 163, 169, 532, 669, 805
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HindIII AAGCTT 1 cut(s) 750
HinfI GANTC 4 cut(s) 97, 434, 832, 881
HpaII CCGG 1 cut(s) 53
HphI GGTGA 3 cut(s) 379, 443, 667
Hpy166II GTNNAC 9 cut(s) 141, 171, 299, 380, 472, 508, 616, 697, 732
Hpy188I TCNGA 4 cut(s) 409, 441, 489, 831
Hpy188III TCNNGA 3 cut(s) 7, 203, 514
Hpy8I GTNNAC 9 cut(s) 141, 171, 299, 380, 472, 508, 616, 697, 732
Hpy99I CGWCG 2 cut(s) 115, 649
HpyCH4III ACNGT 5 cut(s) 311, 679, 690, 738, 770
HpyCH4IV ACGT 4 cut(s) 399, 501, 728, 818
HpyCH4V TGCA 3 cut(s) 19, 461, 532
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 127, 234, 311, 455, 557
HpyF3I CTNAG 4 cut(s) 486, 599, 656, 867
HpySE526I ACGT 4 cut(s) 399, 501, 728, 818
Hsp92I GRCGYC 1 cut(s) 791
Hsp92II CATG 6 cut(s) 19, 163, 169, 532, 669, 805
HspAI GCGC 1 cut(s) 279
Kzo9I GATC 7 cut(s) 92, 147, 350, 480, 489, 516, 672
LguI GCTCTTC 1 cut(s) 5
LmnI GCTCC 1 cut(s) 110
Lsp1109I GCAGC 1 cut(s) 445
LweI GCATC 1 cut(s) 246
MaeI CTAG 1 cut(s) 581
MaeII ACGT 4 cut(s) 399, 501, 728, 818
MaeIII GTNAC 1 cut(s) 710
MalI GATC 7 cut(s) 94, 149, 352, 482, 491, 518, 674
MboI GATC 7 cut(s) 92, 147, 350, 480, 489, 516, 672
MboII GAAGA 4 cut(s) 22, 238, 394, 444
MflI RGATCY 1 cut(s) 489
MhlI GDGCHC 3 cut(s) 210, 316, 657
MluCI AATT 1 cut(s) 620
MlyI GAGTC 2 cut(s) 106, 875
MseI TTAA 2 cut(s) 77, 705
MslI CAYNNNNRTG 4 cut(s) 136, 164, 176, 680
MspA1I CMGCKG 4 cut(s) 72, 458, 603, 759
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 2 cut(s) 375, 812
MvaI CCWGG 2 cut(s) 375, 812
MwoI GCNNNNNNNGC 6 cut(s) 53, 127, 234, 311, 455, 557
NdeII GATC 7 cut(s) 92, 147, 350, 480, 489, 516, 672
NlaIII CATG 6 cut(s) 19, 163, 169, 532, 669, 805
NlaIV GGNNCC 2 cut(s) 313, 577
NmeAIII GCCGAG 1 cut(s) 204
NmuCI GTSAC 1 cut(s) 710
NspI RCATGY 1 cut(s) 19
OliI CACNNNNGTG 1 cut(s) 680
PaeI GCATGC 1 cut(s) 19
PaeR7I CTCGAG 1 cut(s) 203
PciSI GCTCTTC 1 cut(s) 5
PcsI WCGNNNNNNNCGW 3 cut(s) 143, 201, 405
PfeI GAWTC 2 cut(s) 434, 832
PkrI GCNGC 6 cut(s) 25, 74, 123, 188, 214, 460
PleI GAGTC 2 cut(s) 105, 875
PmaCI CACGTG 1 cut(s) 729
PmlI CACGTG 1 cut(s) 729
PpsI GAGTC 2 cut(s) 105, 875
Ppu21I YACGTR 1 cut(s) 729
Psp124BI GAGCTC 1 cut(s) 210
Psp6I CCWGG 2 cut(s) 373, 810
PspCI CACGTG 1 cut(s) 729
PspFI CCCAGC 3 cut(s) 603, 637, 848
PspGI CCWGG 2 cut(s) 373, 810
PspN4I GGNNCC 2 cut(s) 313, 577
PspPI GGNCC 1 cut(s) 874
PstI CTGCAG 1 cut(s) 463
PsuI RGATCY 1 cut(s) 489
PvuII CAGCTG 2 cut(s) 458, 603
RsaI GTAC 9 cut(s) 41, 142, 323, 381, 473, 617, 698, 767, 824
RsaNI GTAC 9 cut(s) 40, 141, 322, 380, 472, 616, 697, 766, 823
RseI CAYNNNNRTG 4 cut(s) 136, 164, 176, 680
SacI GAGCTC 1 cut(s) 210
SapI GCTCTTC 1 cut(s) 5
SaqAI TTAA 2 cut(s) 77, 705
SatI GCNGC 6 cut(s) 24, 73, 122, 187, 213, 459
Sau3AI GATC 7 cut(s) 92, 147, 350, 480, 489, 516, 672
Sau96I GGNCC 1 cut(s) 874
ScaI AGTACT 1 cut(s) 41
SchI GAGTC 2 cut(s) 106, 875
ScrFI CCNGG 2 cut(s) 375, 812
SduI GDGCHC 3 cut(s) 210, 316, 657
SfaNI GCATC 1 cut(s) 246
SfcI CTRYAG 1 cut(s) 459
Sfr274I CTCGAG 1 cut(s) 203
SlaI CTCGAG 1 cut(s) 203
SmiMI CAYNNNNRTG 4 cut(s) 136, 164, 176, 680
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SphI GCATGC 1 cut(s) 19
Sse9I AATT 1 cut(s) 620
SsiI CCGC 7 cut(s) 23, 72, 83, 122, 186, 213, 759
SspMI CTAG 1 cut(s) 581
SstI GAGCTC 1 cut(s) 210
StyD4I CCNGG 2 cut(s) 373, 810
TaaI ACNGT 5 cut(s) 311, 679, 690, 738, 770
TaiI ACGT 4 cut(s) 402, 504, 731, 821
TaqI TCGA 4 cut(s) 95, 146, 204, 569
TasI AATT 1 cut(s) 620
TatI WGTACW 6 cut(s) 39, 140, 379, 615, 696, 765
TauI GCSGC 5 cut(s) 26, 75, 124, 189, 215
TfiI GAWTC 2 cut(s) 434, 832
Tru1I TTAA 2 cut(s) 77, 705
Tru9I TTAA 2 cut(s) 77, 705
TscAI CASTG 1 cut(s) 288
TseFI GTSAC 1 cut(s) 710
TseI GCWGC 1 cut(s) 458
Tsp45I GTSAC 1 cut(s) 710
TspDTI ATGAA 1 cut(s) 517
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 1 cut(s) 288
XceI RCATGY 1 cut(s) 19
XhoI CTCGAG 1 cut(s) 203
XspI CTAG 1 cut(s) 581
ZrmI AGTACT 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.