Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007710.1

Orthogroup ID

OG0001481

Physical Location & Seq

Genomic Coordinates Reverse (-)

10794 .. 11888

Gene Structure 1095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007710.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atgggttcttcccaagacgatacctaccaacctctccttcaacccatttcatcctccccatccttaacagataagcatgaccactcgagtagcactgagctggaaagaatattatccgacacagataggccgttcttgcagcgtctcaaacctgctctatggatcgagtcgaagctccttttcttcctcgccggtccggcagtggtcgtctacatgatcaactacgttatgtccatgtccacccaaatcttctccggccaccttggtaatcttgagctcgccgctgcttctctcggaaacaatggaatccaagtgttcgcctatggcctcatgttaggcatgggaagtgcggtggagacgctatgtggacaagcatatggagctcaaaagtacgaaatgctaggcatatatctacaaagatcaaccatcctcctaacgttggtcggtttcctcctcaccttggtctacatcttctcagaaccagctctaatctttctaggcgagtccccgagaatcgccgctgccgccgccatttacgtctacggcctgatccctcaaatctttgcctacgccgtcaacttcccgatccagaaattcctccaagctcaaagcatagtgactccaagtgcatacatatcagcagtgacactagccgtacacctcttgctgagctgggtggccgtgtacaagattgggcttgggcttctgggcgcgtcgctggtgctcagcctgtcgtggtggatcactgtggtggcgcagtttgtatacatcgtgaaaagcgagaggtgcaggcacacgtggagcggttttacgtggcaagcgttcaccgggttgtatggattcttcaaattatcggtggcgtctgcagtgatgctttgtttagagacgtggtattttcagattctggttctgctggctggcttgctggaaaatcctgagttggctcttgactcgctctcgatttggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0016020 GO:0022857 GO:0031090 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

322

Amino Acids

35.48

Weight (kDa)

5.71

Isoelectric Point (pI)

31.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21690
fragaria_vesca	FvH4_3g02250 FvH4_3g02250 FvH4_6g43220 FvH4_6g43220
malus_domestica	MD05G1344500.v1.1 MD05G1344900.v1.1 MD09G1108500.v1.1 MD17G1096400.v1.1
prunus_persica	Prupe.3G217600_v2.0.a1 Prupe.3G217600_v2.0.a1 Prupe.3G217600_v2.0.a1 Prupe.4G021900_v2.0.a1
pyrus_communis	pycom05g31380 pycom09g03100 pycom17g09250
rosa_chinensis	RchiOBHm_Chr2g0159351 RchiOBHm_Chr2g0159471 RchiOBHm_Chr5g0003321 RchiOBHm_Chr5g0003371
rosa_laevigata	RLG00000021157 RLG00000021161 RLG00000031126 RLG00000031130
rosa_multiflora	Rmu_sc0004800.1_g000007 Rmu_sc0006842.1_g000002 Rmu_sc0007710.1_g000003 Rmu_sc0010917.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072650
rosa_rugosa	Rorug02G0475900 Rorug02G0476200 Rorug02G0476300 Rorug02G0476500 Rorug02G0476600 Rorug02G0476700 Rorug04G0402700.1 Rorug04G0402800
rosa_samantha	Rh2AG542800 Rh2AG543100 Rh2BG555300 Rh2BG555800 Rh2DG564900 Rh2DG565200 Rh5AG028800 Rh5BG028900 Rh5DG029400
rosa_wichuraiana	Rw2G044870 Rw2G044920 Rw5G002370 Rw5G002680 Rw5G002730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	160
AccBSI	CCGCTC	1 cut(s)	804
AccI	GTMKAC	4 cut(s)	210, 465, 540, 765
AccII	CGCG	1 cut(s)	713
AciI	CCGC	6 cut(s)	282, 350, 519, 525, 528, 804
AclI	AACGTT	1 cut(s)	437
AclWI	GGATC	4 cut(s)	170, 544, 580, 749
AcoI	YGGCCR	2 cut(s)	256, 678
AcsI	RAATTY	1 cut(s)	593
AcvI	CACGTG	1 cut(s)	798
AcyI	GRCGYC	1 cut(s)	860
AfaI	GTAC	3 cut(s)	392, 657, 686
AfiI	CCNNNNNNNGG	2 cut(s)	439, 460
AflIII	ACRYGT	1 cut(s)	795
AgsI	TTSAA	2 cut(s)	41, 847
AjiI	CACGTC	1 cut(s)	888
AjuI	GAANNNNNNNTTGG	2 cut(s)	21, 53
AleI	CACNNNNGTG	1 cut(s)	749
AluBI	AGCT	7 cut(s)	100, 175, 277, 383, 485, 605, 672
AluI	AGCT	7 cut(s)	100, 175, 277, 383, 485, 605, 672
Alw21I	GWGCWC	3 cut(s)	279, 385, 726
Alw26I	GTCTC	3 cut(s)	149, 350, 878
AlwI	GGATC	4 cut(s)	170, 544, 580, 749
AlwNI	CAGNNNCTG	1 cut(s)	904
Ama87I	CYCGRG	2 cut(s)	85, 508
AoxI	GGCC	5 cut(s)	128, 256, 325, 544, 678
ApeKI	GCWGC	3 cut(s)	139, 284, 521
ApoI	RAATTY	1 cut(s)	593
AspLEI	GCGC	2 cut(s)	713, 757
AspS9I	GGNCC	1 cut(s)	194
AsuC2I	CCSGG	1 cut(s)	829
AsuHPI	GGTGA	2 cut(s)	448, 817
AvaI	CYCGRG	2 cut(s)	85, 508
AvaII	GGWCC	1 cut(s)	194
BanII	GRGCYC	2 cut(s)	279, 385
BarI	GAAGNNNNNNTAC	2 cut(s)	827, 859
BbrPI	CACGTG	1 cut(s)	798
Bbv12I	GWGCWC	3 cut(s)	279, 385, 726
BbvI	GCAGC	3 cut(s)	151, 271, 508
BccI	CCATC	2 cut(s)	67, 434
BceAI	ACGGC	5 cut(s)	115, 557, 559, 638, 665
BclI	TGATCA	1 cut(s)	216
BcnI	CCSGG	1 cut(s)	829
BcoDI	GTCTC	3 cut(s)	149, 350, 878
BfaI	CTAG	3 cut(s)	401, 497, 650
BfmI	CTRYAG	1 cut(s)	864
BfuAI	ACCTGC	1 cut(s)	160
BglI	GCCNNNNNGGC	1 cut(s)	197
BisI	GCNGC	7 cut(s)	140, 282, 285, 519, 522, 525, 528
BlpI	GCTNAGC	2 cut(s)	668, 725
BlsI	GCNGC	7 cut(s)	141, 283, 286, 520, 523, 526, 529
Bme1390I	CCNGG	1 cut(s)	829
Bme18I	GGWCC	1 cut(s)	194
BmeT110I	CYCGRG	2 cut(s)	85, 508
BmgBI	CACGTC	1 cut(s)	888
BmgT120I	GGNCC	1 cut(s)	194
BmrFI	CCNGG	1 cut(s)	829
BmsI	GCATC	1 cut(s)	861
Bpu1102I	GCTNAGC	2 cut(s)	668, 725
BpuEI	CTTGAG	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	829
BsaAI	YACGTR	2 cut(s)	798, 813
BsaHI	GRCGYC	1 cut(s)	860
BsaJI	CCNNGG	2 cut(s)	262, 459
Bsc4I	CCNNNNNNNGG	2 cut(s)	439, 460
Bse118I	RCCGGY	1 cut(s)	191
BseDI	CCNNGG	2 cut(s)	262, 459
BseGI	GGATG	3 cut(s)	50, 59, 426
BseLI	CCNNNNNNNGG	2 cut(s)	439, 460
BseMII	CTCAG	5 cut(s)	87, 489, 659, 739, 927
BseRI	GAGGAG	1 cut(s)	443
BseXI	GCAGC	3 cut(s)	151, 271, 508
BseYI	CCCAGC	1 cut(s)	672
BsgI	GTGCAG	1 cut(s)	808
Bsh1236I	CGCG	1 cut(s)	713
BshFI	GGCC	5 cut(s)	130, 258, 327, 546, 680
BsiHKAI	GWGCWC	3 cut(s)	279, 385, 726
BsiHKCI	CYCGRG	2 cut(s)	85, 508
BsiSI	CCGG	4 cut(s)	192, 197, 255, 828
BslFI	GGGAC	1 cut(s)	490
BslI	CCNNNNNNNGG	2 cut(s)	439, 460
BsmAI	GTCTC	3 cut(s)	149, 350, 878
BsmBI	CGTCTC	3 cut(s)	149, 350, 878
BsmFI	GGGAC	1 cut(s)	490
BsnI	GGCC	5 cut(s)	130, 258, 327, 546, 680
BsoBI	CYCGRG	2 cut(s)	85, 508
Bsp1286I	GDGCHC	3 cut(s)	279, 385, 726
Bsp1407I	TGTACA	1 cut(s)	684
Bsp143I	GATC	6 cut(s)	162, 216, 419, 549, 585, 741
Bsp1720I	GCTNAGC	2 cut(s)	668, 725
BspACI	CCGC	6 cut(s)	282, 350, 519, 525, 528, 804
BspANI	GGCC	5 cut(s)	130, 258, 327, 546, 680
BspCNI	CTCAG	5 cut(s)	88, 488, 660, 738, 928
BspFNI	CGCG	1 cut(s)	713
BspMAI	CTGCAG	1 cut(s)	868
BspMI	ACCTGC	1 cut(s)	160
BspPI	GGATC	4 cut(s)	170, 544, 580, 749
BsrBI	CCGCTC	1 cut(s)	804
BsrFI	RCCGGY	1 cut(s)	191
BsrGI	TGTACA	1 cut(s)	684
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	2 cut(s)	262, 459
BssMI	GATC	6 cut(s)	162, 216, 419, 549, 585, 741
BssNAI	GTATAC	1 cut(s)	766
BssNI	GRCGYC	1 cut(s)	860
BssT1I	CCWWGG	2 cut(s)	262, 459
Bst1107I	GTATAC	1 cut(s)	766
Bst4CI	ACNGT	1 cut(s)	748
BstACI	GRCGYC	1 cut(s)	860
BstAUI	TGTACA	1 cut(s)	684
BstBAI	YACGTR	2 cut(s)	798, 813
BstC8I	GCNNGC	6 cut(s)	279, 791, 819, 915, 919, 923
BstDEI	CTNAG	5 cut(s)	96, 475, 668, 725, 936
BstF5I	GGATG	3 cut(s)	50, 59, 426
BstFNI	CGCG	1 cut(s)	713
BstHHI	GCGC	2 cut(s)	713, 757
BstKTI	GATC	6 cut(s)	165, 219, 422, 552, 588, 744
BstMAI	GTCTC	3 cut(s)	149, 350, 878
BstMBI	GATC	6 cut(s)	162, 216, 419, 549, 585, 741
BstMWI	GCNNNNNNNGC	6 cut(s)	136, 197, 380, 524, 527, 786
BstSCI	CCNGG	1 cut(s)	827
BstSFI	CTRYAG	1 cut(s)	864
BstUI	CGCG	1 cut(s)	713
BstV1I	GCAGC	3 cut(s)	151, 271, 508
BstZ17I	GTATAC	1 cut(s)	766
BsuRI	GGCC	5 cut(s)	130, 258, 327, 546, 680
BtrI	CACGTC	1 cut(s)	888
BtsCI	GGATG	3 cut(s)	50, 59, 426
BtsI	GCAGTG	3 cut(s)	207, 648, 873
BtsIMutI	CAGTG	5 cut(s)	93, 207, 648, 744, 873
BveI	ACCTGC	1 cut(s)	160
Cac8I	GCNNGC	6 cut(s)	279, 791, 819, 915, 919, 923
CaiI	CAGNNNCTG	1 cut(s)	904
CfoI	GCGC	2 cut(s)	713, 757
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	194
CpoI	CGGWCCG	1 cut(s)	194
CseI	GACGC	4 cut(s)	131, 367, 702, 849
Csp6I	GTAC	3 cut(s)	391, 656, 685
CspI	CGGWCCG	1 cut(s)	194
CviAII	CATG	5 cut(s)	77, 214, 235, 331, 340
CviQI	GTAC	3 cut(s)	391, 656, 685
DdeI	CTNAG	5 cut(s)	96, 475, 668, 725, 936
DpnI	GATC	6 cut(s)	164, 218, 421, 551, 587, 743
DpnII	GATC	6 cut(s)	162, 216, 419, 549, 585, 741
EaeI	YGGCCR	2 cut(s)	256, 678
Ecl136II	GAGCTC	2 cut(s)	277, 383
Eco130I	CCWWGG	2 cut(s)	262, 459
Eco24I	GRGCYC	2 cut(s)	279, 385
Eco47I	GGWCC	1 cut(s)	194
Eco53kI	GAGCTC	2 cut(s)	277, 383
Eco72I	CACGTG	1 cut(s)	798
Eco88I	CYCGRG	2 cut(s)	85, 508
EcoICRI	GAGCTC	2 cut(s)	277, 383
EcoT14I	CCWWGG	2 cut(s)	262, 459
EcoT38I	GRGCYC	2 cut(s)	279, 385
ErhI	CCWWGG	2 cut(s)	262, 459
Esp3I	CGTCTC	3 cut(s)	149, 350, 878
FaeI	CATG	5 cut(s)	80, 217, 238, 334, 343
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	5 cut(s)	76, 213, 234, 330, 339
FauNDI	CATATG	1 cut(s)	376
FbaI	TGATCA	1 cut(s)	216
FblI	GTMKAC	4 cut(s)	210, 465, 540, 765
Fnu4HI	GCNGC	7 cut(s)	140, 282, 285, 519, 522, 525, 528
FokI	GGATG	3 cut(s)	37, 46, 413
FriOI	GRGCYC	2 cut(s)	279, 385
Fsp4HI	GCNGC	7 cut(s)	140, 282, 285, 519, 522, 525, 528
FspBI	CTAG	3 cut(s)	401, 497, 650
GlaI	GCGC	2 cut(s)	712, 756
GluI	GCNGC	7 cut(s)	140, 282, 285, 519, 522, 525, 528
GsaI	CCCAGC	1 cut(s)	676
HaeIII	GGCC	5 cut(s)	130, 258, 327, 546, 680
HapII	CCGG	4 cut(s)	192, 197, 255, 828
HgaI	GACGC	4 cut(s)	131, 367, 702, 849
HhaI	GCGC	2 cut(s)	713, 757
Hin1I	GRCGYC	1 cut(s)	860
Hin1II	CATG	5 cut(s)	80, 217, 238, 334, 343
Hin6I	GCGC	2 cut(s)	711, 755
HinP1I	GCGC	2 cut(s)	711, 755
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HinfI	GANTC	8 cut(s)	167, 306, 503, 513, 619, 840, 901, 950
HpaII	CCGG	4 cut(s)	192, 197, 255, 828
HphI	GGTGA	2 cut(s)	448, 817
Hpy188I	TCNGA	4 cut(s)	118, 296, 478, 900
Hpy188III	TCNNGA	7 cut(s)	272, 583, 589, 772, 935, 947, 958
Hpy99I	CGWCG	1 cut(s)	718
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	1 cut(s)	748
HpyCH4IV	ACGT	6 cut(s)	225, 437, 537, 797, 812, 887
HpyCH4V	TGCA	4 cut(s)	139, 629, 789, 866
HpyF10VI	GCNNNNNNNGC	6 cut(s)	136, 197, 380, 524, 527, 786
HpyF3I	CTNAG	5 cut(s)	96, 475, 668, 725, 936
HpySE526I	ACGT	6 cut(s)	225, 437, 537, 797, 812, 887
Hsp92I	GRCGYC	1 cut(s)	860
Hsp92II	CATG	5 cut(s)	80, 217, 238, 334, 343
HspAI	GCGC	2 cut(s)	711, 755
Ksp22I	TGATCA	1 cut(s)	216
Kzo9I	GATC	6 cut(s)	162, 216, 419, 549, 585, 741
LmnI	GCTCC	3 cut(s)	180, 380, 801
Lsp1109I	GCAGC	3 cut(s)	151, 271, 508
LweI	GCATC	1 cut(s)	861
MaeI	CTAG	3 cut(s)	401, 497, 650
MaeII	ACGT	6 cut(s)	225, 437, 537, 797, 812, 887
MaeIII	GTNAC	2 cut(s)	616, 643
MalI	GATC	6 cut(s)	164, 218, 421, 551, 587, 743
MbiI	CCGCTC	1 cut(s)	804
MboI	GATC	6 cut(s)	162, 216, 419, 549, 585, 741
MboII	GAAGA	4 cut(s)	175, 241, 463, 835
MhlI	GDGCHC	3 cut(s)	279, 385, 726
MluCI	AATT	2 cut(s)	593, 848
MlyI	GAGTC	4 cut(s)	176, 512, 613, 944
MmeI	TCCRAC	1 cut(s)	141
MseI	TTAA	1 cut(s)	65
MslI	CAYNNNNRTG	1 cut(s)	749
MspA1I	CMGCKG	2 cut(s)	284, 521
MspI	CCGG	4 cut(s)	192, 197, 255, 828
MspR9I	CCNGG	1 cut(s)	829
MvnI	CGCG	1 cut(s)	713
MwoI	GCNNNNNNNGC	6 cut(s)	136, 197, 380, 524, 527, 786
NciI	CCSGG	1 cut(s)	829
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	6 cut(s)	162, 216, 419, 549, 585, 741
NlaIII	CATG	5 cut(s)	80, 217, 238, 334, 343
NmuCI	GTSAC	2 cut(s)	616, 643
OliI	CACNNNNGTG	1 cut(s)	749
PaeR7I	CTCGAG	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	2 cut(s)	777, 818
PfeI	GAWTC	4 cut(s)	306, 513, 840, 901
PkrI	GCNGC	7 cut(s)	141, 283, 286, 520, 523, 526, 529
PleI	GAGTC	4 cut(s)	175, 511, 613, 944
PmaCI	CACGTG	1 cut(s)	798
PmlI	CACGTG	1 cut(s)	798
PpsI	GAGTC	4 cut(s)	175, 511, 613, 944
Ppu21I	YACGTR	2 cut(s)	798, 813
Psp124BI	GAGCTC	2 cut(s)	279, 385
Psp1406I	AACGTT	1 cut(s)	437
PspCI	CACGTG	1 cut(s)	798
PspFI	CCCAGC	1 cut(s)	672
PspPI	GGNCC	1 cut(s)	194
PspXI	VCTCGAGB	1 cut(s)	85
PstI	CTGCAG	1 cut(s)	868
PstNI	CAGNNNCTG	1 cut(s)	904
RsaI	GTAC	3 cut(s)	392, 657, 686
RsaNI	GTAC	3 cut(s)	391, 656, 685
RseI	CAYNNNNRTG	1 cut(s)	749
Rsr2I	CGGWCCG	1 cut(s)	194
RsrII	CGGWCCG	1 cut(s)	194
SacI	GAGCTC	2 cut(s)	279, 385
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	7 cut(s)	140, 282, 285, 519, 522, 525, 528
Sau3AI	GATC	6 cut(s)	162, 216, 419, 549, 585, 741
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	4 cut(s)	176, 512, 613, 944
ScrFI	CCNGG	1 cut(s)	829
SduI	GDGCHC	3 cut(s)	279, 385, 726
SfaNI	GCATC	1 cut(s)	861
SfcI	CTRYAG	1 cut(s)	864
Sfr274I	CTCGAG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	194
SlaI	CTCGAG	1 cut(s)	85
SmiMI	CAYNNNNRTG	1 cut(s)	749
SmlI	CTYRAG	2 cut(s)	85, 272
SmoI	CTYRAG	2 cut(s)	85, 272
Sse9I	AATT	2 cut(s)	593, 848
SsiI	CCGC	6 cut(s)	282, 350, 519, 525, 528, 804
SspI	AATATT	1 cut(s)	111
SspMI	CTAG	3 cut(s)	401, 497, 650
SstI	GAGCTC	2 cut(s)	279, 385
StyD4I	CCNGG	1 cut(s)	827
StyI	CCWWGG	2 cut(s)	262, 459
TaaI	ACNGT	1 cut(s)	748
TaiI	ACGT	6 cut(s)	228, 440, 540, 800, 815, 890
TaqI	TCGA	4 cut(s)	86, 165, 170, 959
TasI	AATT	2 cut(s)	593, 848
TatI	WGTACW	1 cut(s)	684
TauI	GCSGC	4 cut(s)	284, 521, 527, 530
TfiI	GAWTC	4 cut(s)	306, 513, 840, 901
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	5 cut(s)	100, 207, 648, 751, 873
TseFI	GTSAC	2 cut(s)	616, 643
TseI	GCWGC	3 cut(s)	139, 284, 521
Tsp45I	GTSAC	2 cut(s)	616, 643
TspDTI	ATGAA	1 cut(s)	39
TspRI	CASTG	5 cut(s)	100, 207, 648, 751, 873
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	1 cut(s)	593
XhoI	CTCGAG	1 cut(s)	85
XmiI	GTMKAC	4 cut(s)	210, 465, 540, 765
XspI	CTAG	3 cut(s)	401, 497, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.