AT3G21690

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
7638584 .. 7642389
3806 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G21690.1

Sequence Viewer

Length: 1521 bp
ATGGACTCGTCTCCAAACGACGGCGTACACCAACCGCTTCTCCATCCTCAACCATCTCCATCTCCGCCGGAGTCAACCAACGGCGAGCTAGAAACTGTCCTCTCCGACGTAGAAACTCCTCTGTTTCTCCGCCTACGTAAAGCCACCATAATCGAATCAAAGCTTCTCTTTAACCTCGCTGCACCAGCCGTCATCGTCTACATGATTAACTACCTCATGTCCATGTCTACTCAAATCTTCTCCGGCCATCTCGGTAACCTCGAACTCGCCGCCGCTTCTCTTGGTAACACCGGTATTCAAGTCTTCGCTTACGGTCTCATGCTAGGCATGGGGAGTGCAGTGGAGACGTTATGTGGTCAAGCGTACGGTGGTAGAAAATACGAGATGCTTGGAGTTTATCTCCAAAGATCAACCGTATTACTAACACTCACCGGCCTCCTCCTTACTTTAATCTACGTTTTCTCCGAACCAATCCTTCTCTTCCTCGGTGAATCTCCCGCAATCGCTTCGGCCGCATCGCTCTTCGTCTACGGTCTTATCCCTCAAATCTTTGCCTACGCAGCGAACTTTCCAATACAAAAATTTCTCCAATCACAAAGCATAGTAGCTCCAAGTGCTTATATCTCAACGGCTACGCTCTTTGTTCACCTTCTTTTAAGTTGGCTCGCGGTTTACAAGCTTGGTATGGGACTTCTTGGTGCGTCGCTTGTGCTTAGCTTGTCGTGGTGGATTATAGTCGTGGCTCAGTTTGTTTATATTGTGACGAGTGAGAGGTGTCGTGAGACGTGGAGAGGTTTTAGTGTTCAAGCTTTCTCGGGTTTGTGGAGTTTCTTTAAACTCTCCGCCGCTTCTGCCGTGATGCTTTGCCTTGAGACTTGGTATTTTCAGATTCTCGTTCTTCTTGCCGGACTTCTCGAGAATCCTGAACTTGCTCTTGATTCACTCTCTATTTGCATGACGATTTCAGGGTGGGTGTTCATGATATCTGTTGGATTCAATGCAGCGATAAGTGTAAGAGTGAGCAATGAACTTGGAGCTGGGAACCCTAAATCAGCAGCTTTTTCTGTGATCATCGTTAACATTTATTCGTTAATCACTTGTGTGATCCTAGCCATTGTTATTTTAGCGTGCCGCGATGTTTTAAGCTATGCTTTCACTGAGGGTAAAGAAGTCTCGGACGCTGTTTCTGATCTCTGTCCGCTTCTTGCCGTAACACTTGTCCTTAACGGAATCCAACCTGTCCTCTCTGGTGTGGCGGTTGGATGCGGTTGGCAAACGTTTGTGGCGAAGGTTAACGTTGGATGTTACTACATTATTGGAATTCCTCTTGGGGCTCTCTTTGGGTTTTACTTTAACTTCGGTGCCAAGGGTATATGGACGGGGATGATCGGTGGTACGGTTATACAAACGTTTATTTTGGCGTGGGTCACGTTTAGAACAGATTGGACAAAAGAAGTGGAAGAAGCTTCCAAAAGGTTGGACAAATGGAGCAACAAGAAACAAGAAGTTGTTCCTGAATGA

Protein Analysis

506

Amino Acids

54.95

Weight (kDa)

5.4

Isoelectric Point (pI)

32.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 62 - 222 1e-34 MatE
MatE PF01554 284 - 445 2.6e-29 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1361
AccI GTMKAC 3 cut(s) 198, 227, 528
AccII CGCG 2 cut(s) 668, 1134
AclI AACGTT 3 cut(s) 1277, 1296, 1409
AclWI GGATC 1 cut(s) 1099
AcoI YGGCCR 2 cut(s) 244, 510
AcsI RAATTY 2 cut(s) 581, 1320
AfaI GTAC 3 cut(s) 27, 365, 1396
AfiI CCNNNNNNNGG 1 cut(s) 20
AgeI ACCGGT 1 cut(s) 290
AgsI TTSAA 3 cut(s) 299, 806, 997
AjiI CACGTC 1 cut(s) 786
AleI CACNNNNGTG 1 cut(s) 1100
Alw26I GTCTC 6 cut(s) 15, 320, 338, 776, 866, 1177
AlwI GGATC 1 cut(s) 1099
Ama87I CYCGRG 2 cut(s) 814, 914
AoxI GGCC 3 cut(s) 244, 433, 510
ApeKI GCWGC 4 cut(s) 179, 560, 1001, 1055
ApoI RAATTY 2 cut(s) 581, 1320
AsiGI ACCGGT 1 cut(s) 290
Asp700I GAANNNNTTC 1 cut(s) 1509
AsuHPI GGTGA 3 cut(s) 421, 500, 638
AvaI CYCGRG 2 cut(s) 814, 914
BanI GGYRCC 1 cut(s) 1361
BanII GRGCYC 1 cut(s) 1336
BbsI GAAGAC 1 cut(s) 295
BbvI GCAGC 4 cut(s) 166, 572, 1013, 1067
BccI CCATC 4 cut(s) 51, 61, 67, 255
BceAI ACGGC 6 cut(s) 37, 97, 173, 645, 839, 1193
BcgI CGANNNNNNTGC 2 cut(s) 489, 523
BclI TGATCA 1 cut(s) 1068
BcoDI GTCTC 6 cut(s) 15, 320, 338, 776, 866, 1177
BfaI CTAG 3 cut(s) 89, 323, 1109
BisI GCNGC 9 cut(s) 180, 270, 273, 513, 561, 846, 1002, 1056, 1132
BlpI GCTNAGC 1 cut(s) 713
BlsI GCNGC 9 cut(s) 181, 271, 274, 514, 562, 847, 1003, 1057, 1133
BmeT110I CYCGRG 2 cut(s) 814, 914
BmgBI CACGTC 1 cut(s) 786
BmiI GGNNCC 2 cut(s) 1043, 1363
BmsI GCATC 4 cut(s) 375, 524, 849, 1253
BpiI GAAGAC 1 cut(s) 295
BplI GAGNNNNNCTC 2 cut(s) 384, 416
Bpu1102I GCTNAGC 1 cut(s) 713
BpuEI CTTGAG 1 cut(s) 890
BsaAI YACGTR 1 cut(s) 137
BsaI GGTCTC 1 cut(s) 320
BsaJI CCNNGG 2 cut(s) 484, 1365
BsaWI WCCGGW 1 cut(s) 290
BsaXI ACNNNNNCTCC 4 cut(s) 24, 54, 446, 476
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse118I RCCGGY 2 cut(s) 290, 431
Bse3DI GCAATG 1 cut(s) 1030
BseDI CCNNGG 2 cut(s) 484, 1365
BseGI GGATG 4 cut(s) 43, 1268, 1307, 1389
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMI GCAATG 1 cut(s) 1030
BseMII CTCAG 2 cut(s) 758, 1149
BseRI GAGGAG 2 cut(s) 108, 428
BseX3I CGGCCG 1 cut(s) 510
BseXI GCAGC 4 cut(s) 166, 572, 1013, 1067
BseYI CCCAGC 1 cut(s) 1037
BsgI GTGCAG 2 cut(s) 165, 357
Bsh1236I CGCG 2 cut(s) 668, 1134
Bsh1285I CGRYCG 1 cut(s) 513
BshFI GGCC 3 cut(s) 246, 435, 512
BshNI GGYRCC 1 cut(s) 1361
BshTI ACCGGT 1 cut(s) 290
BsiEI CGRYCG 1 cut(s) 513
BsiHKCI CYCGRG 2 cut(s) 814, 914
BsiSI CCGG 5 cut(s) 68, 243, 291, 432, 906
BsiWI CGTACG 1 cut(s) 363
BslFI GGGAC 1 cut(s) 702
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 6 cut(s) 15, 320, 338, 776, 866, 1177
BsmBI CGTCTC 3 cut(s) 15, 338, 776
BsmFI GGGAC 1 cut(s) 702
BsnI GGCC 3 cut(s) 246, 435, 512
Bso31I GGTCTC 1 cut(s) 320
BsoBI CYCGRG 2 cut(s) 814, 914
Bsp1286I GDGCHC 1 cut(s) 1336
Bsp143I GATC 5 cut(s) 407, 1068, 1104, 1189, 1386
Bsp1720I GCTNAGC 1 cut(s) 713
BspANI GGCC 3 cut(s) 246, 435, 512
BspCNI CTCAG 2 cut(s) 757, 1150
BspFNI CGCG 2 cut(s) 668, 1134
BspHI TCATGA 1 cut(s) 978
BspLI GGNNCC 2 cut(s) 1043, 1363
BspPI GGATC 1 cut(s) 1099
BspQI GCTCTTC 1 cut(s) 527
BspT107I GGYRCC 1 cut(s) 1361
BspTNI GGTCTC 1 cut(s) 320
BsrDI GCAATG 1 cut(s) 1030
BsrFI RCCGGY 2 cut(s) 290, 431
BssAI RCCGGY 2 cut(s) 290, 431
BssECI CCNNGG 2 cut(s) 484, 1365
BssMI GATC 5 cut(s) 407, 1068, 1104, 1189, 1386
BssT1I CCWWGG 1 cut(s) 1365
Bst4CI ACNGT 6 cut(s) 97, 314, 368, 415, 533, 1399
Bst6I CTCTTC 2 cut(s) 485, 527
BstBAI YACGTR 1 cut(s) 137
BstC8I GCNNGC 3 cut(s) 86, 666, 1129
BstDEI CTNAG 3 cut(s) 713, 744, 1158
BstEII GGTNACC 1 cut(s) 254
BstF5I GGATG 4 cut(s) 43, 1268, 1307, 1389
BstFNI CGCG 2 cut(s) 668, 1134
BstKTI GATC 5 cut(s) 410, 1071, 1107, 1192, 1389
BstMAI GTCTC 6 cut(s) 15, 320, 338, 776, 866, 1177
BstMBI GATC 5 cut(s) 407, 1068, 1104, 1189, 1386
BstMCI CGRYCG 1 cut(s) 513
BstMWI GCNNNNNNNGC 5 cut(s) 185, 512, 560, 614, 851
BstPI GGTNACC 1 cut(s) 254
BstSNI TACGTA 1 cut(s) 137
BstUI CGCG 2 cut(s) 668, 1134
BstV1I GCAGC 4 cut(s) 166, 572, 1013, 1067
BstV2I GAAGAC 1 cut(s) 295
BstXI CCANNNNNNTGG 1 cut(s) 1477
BstZI CGGCCG 1 cut(s) 510
BsuRI GGCC 3 cut(s) 246, 435, 512
BtgZI GCGATG 2 cut(s) 501, 1149
BtrI CACGTC 1 cut(s) 786
BtsCI GGATG 4 cut(s) 43, 1268, 1307, 1389
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 2 cut(s) 345, 1155
Cac8I GCNNGC 3 cut(s) 86, 666, 1129
CciI TCATGA 1 cut(s) 978
Cfr10I RCCGGY 2 cut(s) 290, 431
CseI GACGC 2 cut(s) 690, 1187
Csp6I GTAC 3 cut(s) 26, 364, 1395
CspAI ACCGGT 1 cut(s) 290
CspCI CAANNNNNGTGG 2 cut(s) 1437, 1472
CviAII CATG 7 cut(s) 202, 217, 223, 319, 328, 955, 979
CviQI GTAC 3 cut(s) 26, 364, 1395
DdeI CTNAG 3 cut(s) 713, 744, 1158
DpnI GATC 5 cut(s) 409, 1070, 1106, 1191, 1388
DpnII GATC 5 cut(s) 407, 1068, 1104, 1189, 1386
DraI TTTAAA 1 cut(s) 835
EaeI YGGCCR 2 cut(s) 244, 510
EagI CGGCCG 1 cut(s) 510
Eam1104I CTCTTC 2 cut(s) 485, 527
EarI CTCTTC 2 cut(s) 485, 527
EciI GGCGGA 3 cut(s) 54, 119, 832
EclXI CGGCCG 1 cut(s) 510
Eco105I TACGTA 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 1365
Eco24I GRGCYC 1 cut(s) 1336
Eco31I GGTCTC 1 cut(s) 320
Eco32I GATATC 1 cut(s) 984
Eco52I CGGCCG 1 cut(s) 510
Eco88I CYCGRG 2 cut(s) 814, 914
Eco91I GGTNACC 1 cut(s) 254
EcoO65I GGTNACC 1 cut(s) 254
EcoRI GAATTC 1 cut(s) 1320
EcoRV GATATC 1 cut(s) 984
EcoT14I CCWWGG 1 cut(s) 1365
EcoT38I GRGCYC 1 cut(s) 1336
ErhI CCWWGG 1 cut(s) 1365
Esp3I CGTCTC 3 cut(s) 15, 338, 776
FaeI CATG 7 cut(s) 205, 220, 226, 322, 331, 958, 982
FalI AAGNNNNNCTT 4 cut(s) 152, 184, 1135, 1167
FaqI GGGAC 1 cut(s) 702
FatI CATG 7 cut(s) 201, 216, 222, 318, 327, 954, 978
FauI CCCGC 1 cut(s) 505
FbaI TGATCA 1 cut(s) 1068
FblI GTMKAC 3 cut(s) 198, 227, 528
Fnu4HI GCNGC 9 cut(s) 180, 270, 273, 513, 561, 846, 1002, 1056, 1132
FokI GGATG 4 cut(s) 30, 1275, 1314, 1396
FriOI GRGCYC 1 cut(s) 1336
Fsp4HI GCNGC 9 cut(s) 180, 270, 273, 513, 561, 846, 1002, 1056, 1132
FspBI CTAG 3 cut(s) 89, 323, 1109
GluI GCNGC 9 cut(s) 180, 270, 273, 513, 561, 846, 1002, 1056, 1132
GsaI CCCAGC 1 cut(s) 1041
HaeIII GGCC 3 cut(s) 246, 435, 512
HapII CCGG 5 cut(s) 68, 243, 291, 432, 906
HgaI GACGC 2 cut(s) 690, 1187
Hin1II CATG 7 cut(s) 205, 220, 226, 322, 331, 958, 982
HincII GTYRAC 3 cut(s) 75, 1078, 1294
HindII GTYRAC 3 cut(s) 75, 1078, 1294
HindIII AAGCTT 4 cut(s) 161, 677, 807, 1464
HinfI GANTC 9 cut(s) 5, 71, 155, 491, 889, 919, 938, 993, 1230
HpaI GTTAAC 2 cut(s) 1078, 1294
HpaII CCGG 5 cut(s) 68, 243, 291, 432, 906
HphI GGTGA 3 cut(s) 421, 500, 638
Hpy166II GTNNAC 9 cut(s) 28, 75, 199, 228, 529, 646, 673, 1078, 1294
Hpy188I TCNGA 5 cut(s) 106, 466, 888, 1177, 1189
Hpy188III TCNNGA 7 cut(s) 779, 914, 916, 923, 935, 979, 1514
Hpy8I GTNNAC 9 cut(s) 28, 75, 199, 228, 529, 646, 673, 1078, 1294
Hpy99I CGWCG 3 cut(s) 23, 110, 706
HpyAV CCTTC 3 cut(s) 485, 659, 1282
HpyCH4III ACNGT 6 cut(s) 97, 314, 368, 415, 533, 1399
HpyCH4IV ACGT 9 cut(s) 108, 136, 347, 456, 785, 1277, 1296, 1409, 1430
HpyCH4V TGCA 4 cut(s) 182, 338, 954, 1001
HpyF10VI GCNNNNNNNGC 5 cut(s) 185, 512, 560, 614, 851
HpyF3I CTNAG 3 cut(s) 713, 744, 1158
HpySE526I ACGT 9 cut(s) 108, 136, 347, 456, 785, 1277, 1296, 1409, 1430
Hsp92II CATG 7 cut(s) 205, 220, 226, 322, 331, 958, 982
Ksp22I TGATCA 1 cut(s) 1068
KspAI GTTAAC 2 cut(s) 1078, 1294
Kzo9I GATC 5 cut(s) 407, 1068, 1104, 1189, 1386
LguI GCTCTTC 1 cut(s) 527
LmnI GCTCC 3 cut(s) 613, 1034, 1488
Lsp1109I GCAGC 4 cut(s) 166, 572, 1013, 1067
LweI GCATC 4 cut(s) 375, 524, 849, 1253
MaeI CTAG 3 cut(s) 89, 323, 1109
MaeII ACGT 9 cut(s) 108, 136, 347, 456, 785, 1277, 1296, 1409, 1430
MaeIII GTNAC 6 cut(s) 254, 284, 760, 1210, 1304, 1426
MalI GATC 5 cut(s) 409, 1070, 1106, 1191, 1388
MboI GATC 5 cut(s) 407, 1068, 1104, 1189, 1386
MboII GAAGA 6 cut(s) 229, 295, 472, 514, 890, 1472
MhlI GDGCHC 1 cut(s) 1336
MluCI AATT 2 cut(s) 581, 1320
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 6 cut(s) 129, 970, 1240, 1258, 1279, 1458
MroXI GAANNNNTTC 1 cut(s) 1509
MslI CAYNNNNRTG 2 cut(s) 221, 1100
MspI CCGG 5 cut(s) 68, 243, 291, 432, 906
MvnI CGCG 2 cut(s) 668, 1134
MwoI GCNNNNNNNGC 5 cut(s) 185, 512, 560, 614, 851
NdeII GATC 5 cut(s) 407, 1068, 1104, 1189, 1386
NlaIII CATG 7 cut(s) 205, 220, 226, 322, 331, 958, 982
NlaIV GGNNCC 2 cut(s) 1043, 1363
NmuCI GTSAC 2 cut(s) 760, 1426
OliI CACNNNNGTG 1 cut(s) 1100
PaeR7I CTCGAG 1 cut(s) 914
PagI TCATGA 1 cut(s) 978
PciSI GCTCTTC 1 cut(s) 527
PcsI WCGNNNNNNNCGW 3 cut(s) 258, 462, 1283
PdmI GAANNNNTTC 1 cut(s) 1509
PfeI GAWTC 7 cut(s) 155, 491, 889, 919, 938, 993, 1230
Pfl23II CGTACG 1 cut(s) 363
PinAI ACCGGT 1 cut(s) 290
PkrI GCNGC 9 cut(s) 181, 271, 274, 514, 562, 847, 1003, 1057, 1133
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
Ppu21I YACGTR 1 cut(s) 137
Psp1406I AACGTT 3 cut(s) 1277, 1296, 1409
PspEI GGTNACC 1 cut(s) 254
PspFI CCCAGC 1 cut(s) 1037
PspLI CGTACG 1 cut(s) 363
PspN4I GGNNCC 2 cut(s) 1043, 1363
RsaI GTAC 3 cut(s) 27, 365, 1396
RsaNI GTAC 3 cut(s) 26, 364, 1395
RseI CAYNNNNRTG 2 cut(s) 221, 1100
SapI GCTCTTC 1 cut(s) 527
SatI GCNGC 9 cut(s) 180, 270, 273, 513, 561, 846, 1002, 1056, 1132
Sau3AI GATC 5 cut(s) 407, 1068, 1104, 1189, 1386
SchI GAGTC 1 cut(s) 80
SduI GDGCHC 1 cut(s) 1336
SfaNI GCATC 4 cut(s) 375, 524, 849, 1253
Sfr274I CTCGAG 1 cut(s) 914
SlaI CTCGAG 1 cut(s) 914
SmiMI CAYNNNNRTG 2 cut(s) 221, 1100
SmlI CTYRAG 2 cut(s) 869, 914
SmoI CTYRAG 2 cut(s) 869, 914
SnaBI TACGTA 1 cut(s) 137
Sse9I AATT 2 cut(s) 581, 1320
SspMI CTAG 3 cut(s) 89, 323, 1109
StyI CCWWGG 1 cut(s) 1365
TaaI ACNGT 6 cut(s) 97, 314, 368, 415, 533, 1399
TaiI ACGT 9 cut(s) 111, 139, 350, 459, 788, 1280, 1299, 1412, 1433
TaqI TCGA 3 cut(s) 153, 261, 915
TasI AATT 2 cut(s) 581, 1320
TauI GCSGC 5 cut(s) 272, 275, 515, 848, 1134
TfiI GAWTC 7 cut(s) 155, 491, 889, 919, 938, 993, 1230
TscAI CASTG 2 cut(s) 345, 1162
TseFI GTSAC 2 cut(s) 760, 1426
TseI GCWGC 4 cut(s) 179, 560, 1001, 1055
Tsp45I GTSAC 2 cut(s) 760, 1426
TspDTI ATGAA 2 cut(s) 967, 1041
TspGWI ACGGA 1 cut(s) 1242
TspRI CASTG 2 cut(s) 345, 1162
XapI RAATTY 2 cut(s) 581, 1320
XhoI CTCGAG 1 cut(s) 914
XmiI GTMKAC 3 cut(s) 198, 227, 528
XmnI GAANNNNTTC 1 cut(s) 1509
XspI CTAG 3 cut(s) 89, 323, 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.