RchiOBHm_Chr2g0159541

ankyrin repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005106
Physical Location & Seq
Reverse (-)
75647250 .. 75647768
519 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52811

Sequence Viewer

Length: 519 bp
ATGATCAGGGGGAGGATTACCTCGTCAAGGAGGCGTTCGTGTATTAGATCCGGCGGCCATGGAGCCAGCATGGATGATAGGGGATGGACTCAACTTCACATTGGTTGCCGCAAGGGTGATCTCAAAGAGGTGAAGCGGCTTCTCAACCAGGGTGTACTGGATGTGAATGTGGCTACATGCAGTGGTCAAAAATCAAGAGGGGTCACCCCTCTTCACCTCGCCGCAGAGGGCGGCCATGTTGACGTCATGGATGAGTTGCTTCAGCGTGGGGCTAACATAGATGCTAGAACTAAACAGCTGGGCAGTGCTTGCGGCTGGACTCCGCTTCACAATGCAGCGAAAGAGAGGAGGAGGGAGGCAGTGAAGTTTCTGGTGGAGAATGGGGCGTTCTTGCCGGTTGACATGCAGGATTGTAGGTTTAACCCTCCACTCCATTACTGCCTCGGTCTCGAGTGGGCTTACGAGGACATGAAACGGCTTCAGCAACAAACGTCATCGTCAGGGGAGAGCTCTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000278 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0001508 GO:0001932 GO:0001933 GO:0002028 GO:0003008 GO:0003254 GO:0003674 GO:0003824 GO:0004842 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005783 GO:0005794 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0006810 GO:0006888 GO:0006892 GO:0006893 GO:0006996 GO:0007009 GO:0007010 GO:0007016 GO:0007049 GO:0007154 GO:0007275 GO:0007399 GO:0007409 GO:0007528 GO:0008037 GO:0008092 GO:0008104 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009553 GO:0009566 GO:0009567 GO:0009628 GO:0009639 GO:0009642 GO:0009644 GO:0009653 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009962 GO:0009963 GO:0009986 GO:0009987 GO:0009988 GO:0010033 GO:0010035 GO:0010038 GO:0010218 GO:0010256 GO:0010313 GO:0010468 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0010647 GO:0010649 GO:0010650 GO:0010765 GO:0010959 GO:0010960 GO:0012505 GO:0014704 GO:0014731 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0016328 GO:0016528 GO:0016529 GO:0016567 GO:0016740 GO:0019220 GO:0019222 GO:0019226 GO:0019228 GO:0019538 GO:0019787 GO:0019899 GO:0019953 GO:0022008 GO:0022402 GO:0022407 GO:0022409 GO:0022412 GO:0022414 GO:0022607 GO:0022898 GO:0023052 GO:0030016 GO:0030017 GO:0030018 GO:0030030 GO:0030054 GO:0030154 GO:0030155 GO:0030182 GO:0030315 GO:0030424 GO:0030425 GO:0030507 GO:0030674 GO:0031175 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031537 GO:0031539 GO:0031540 GO:0031542 GO:0031594 GO:0031625 GO:0031674 GO:0032026 GO:0032268 GO:0032269 GO:0032386 GO:0032388 GO:0032409 GO:0032410 GO:0032411 GO:0032412 GO:0032413 GO:0032414 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032507 GO:0032879 GO:0032880 GO:0032989 GO:0032990 GO:0032991 GO:0033036 GO:0033157 GO:0033267 GO:0033268 GO:0034110 GO:0034112 GO:0034285 GO:0034613 GO:0034762 GO:0034763 GO:0034764 GO:0034765 GO:0034766 GO:0034767 GO:0035637 GO:0036211 GO:0036477 GO:0042221 GO:0042325 GO:0042326 GO:0042383 GO:0042391 GO:0042592 GO:0042886 GO:0042995 GO:0043001 GO:0043005 GO:0043034 GO:0043170 GO:0043194 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043266 GO:0043267 GO:0043269 GO:0043270 GO:0043271 GO:0043292 GO:0043412 GO:0044085 GO:0044091 GO:0044092 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044291 GO:0044304 GO:0044325 GO:0044389 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044456 GO:0044459 GO:0044463 GO:0044464 GO:0044703 GO:0045026 GO:0045184 GO:0045185 GO:0045202 GO:0045211 GO:0045296 GO:0045760 GO:0045785 GO:0045838 GO:0045936 GO:0046907 GO:0048193 GO:0048229 GO:0048468 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050808 GO:0050839 GO:0050877 GO:0050896 GO:0051049 GO:0051050 GO:0051051 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051235 GO:0051246 GO:0051248 GO:0051301 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051716 GO:0055065 GO:0055080 GO:0060090 GO:0060255 GO:0060341 GO:0061024 GO:0061025 GO:0061564 GO:0061640 GO:0061936 GO:0061951 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070647 GO:0070727 GO:0070887 GO:0071241 GO:0071248 GO:0071286 GO:0071702 GO:0071704 GO:0071705 GO:0071709 GO:0071840 GO:0071944 GO:0072507 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080090 GO:0080173 GO:0090087 GO:0090150 GO:0090313 GO:0090314 GO:0090316 GO:0097060 GO:0097447 GO:0097458 GO:0098590 GO:0098771 GO:0098794 GO:0098876 GO:0098900 GO:0098901 GO:0098902 GO:0099080 GO:0099081 GO:0099512 GO:0120025 GO:0120036 GO:0120038 GO:0120039 GO:0140096 GO:1900825 GO:1900827 GO:1901016 GO:1901017 GO:1901379 GO:1901380 GO:1901564 GO:1901700 GO:1902259 GO:1902260 GO:1902305 GO:1902307 GO:1902494 GO:1903047 GO:1903533 GO:1903817 GO:1903827 GO:1903829 GO:1904062 GO:1904063 GO:1904064 GO:1904181 GO:1904951 GO:1905475 GO:1905477 GO:1990234 GO:1990778 GO:2000649 GO:2000651 GO:2001257 GO:2001258 GO:2001259
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_3 Ank_4

Protein Analysis

172

Amino Acids

19.06

Weight (kDa)

9.1

Isoelectric Point (pI)

57.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 23 - 96 7.9e-12 Ankyrin repeats (3 copies)
Ank PF00023 67 - 98 9.9e-10 Ankyrin repeat
Ank_3 PF13606 67 - 95 3.4e-06 Ankyrin repeat
Ank_4 PF13637 71 - 125 3.2e-10 Ankyrin repeats (many copies)
Ank_2 PF12796 103 - 148 9.1e-06 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 246
AciI CCGC 7 cut(s) 54, 109, 136, 222, 231, 312, 323
AclWI GGATC 1 cut(s) 42
AcoI YGGCCR 2 cut(s) 55, 232
AcuI CTGAAG 2 cut(s) 245, 464
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 1 cut(s) 156
AfiI CCNNNNNNNGG 1 cut(s) 27
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 2 cut(s) 298, 510
AluI AGCT 2 cut(s) 298, 510
Alw21I GWGCWC 1 cut(s) 512
Alw26I GTCTC 1 cut(s) 452
AlwI GGATC 1 cut(s) 42
Ama87I CYCGRG 1 cut(s) 449
AoxI GGCC 2 cut(s) 55, 232
ApeKI GCWGC 1 cut(s) 335
AsuHPI GGTGA 4 cut(s) 128, 142, 196, 206
AvaI CYCGRG 1 cut(s) 449
BanII GRGCYC 1 cut(s) 512
Bbv12I GWGCWC 1 cut(s) 512
BbvI GCAGC 1 cut(s) 347
BccI CCATC 1 cut(s) 78
BceAI ACGGC 1 cut(s) 491
BciT130I CCWGG 1 cut(s) 149
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 452
BfaI CTAG 1 cut(s) 285
BisI GCNGC 7 cut(s) 55, 109, 137, 222, 232, 313, 336
BlsI GCNGC 7 cut(s) 56, 110, 138, 223, 233, 314, 337
Bme1390I CCNGG 1 cut(s) 149
BmeT110I CYCGRG 1 cut(s) 449
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 271
BsaHI GRCGYC 1 cut(s) 243
BsaI GGTCTC 1 cut(s) 452
BsaJI CCNNGG 3 cut(s) 58, 148, 442
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse118I RCCGGY 1 cut(s) 394
Bse1I ACTGG 1 cut(s) 162
BseBI CCWGG 1 cut(s) 149
BseDI CCNNGG 3 cut(s) 58, 148, 442
BseGI GGATG 4 cut(s) 79, 89, 166, 256
BseLI CCNNNNNNNGG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 162
BseRI GAGGAG 2 cut(s) 361, 364
BseXI GCAGC 1 cut(s) 347
BseYI CCCAGC 1 cut(s) 298
BshFI GGCC 2 cut(s) 57, 234
BsiHKAI GWGCWC 1 cut(s) 512
BsiHKCI CYCGRG 1 cut(s) 449
BsiSI CCGG 2 cut(s) 51, 395
BslI CCNNNNNNNGG 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 452
BsnI GGCC 2 cut(s) 57, 234
Bso31I GGTCTC 1 cut(s) 452
BsoBI CYCGRG 1 cut(s) 449
Bsp1286I GDGCHC 1 cut(s) 512
Bsp143I GATC 3 cut(s) 3, 47, 118
Bsp19I CCATGG 1 cut(s) 58
BspACI CCGC 7 cut(s) 54, 109, 136, 222, 231, 312, 323
BspANI GGCC 2 cut(s) 57, 234
BspLI GGNNCC 1 cut(s) 64
BspPI GGATC 1 cut(s) 42
BspTNI GGTCTC 1 cut(s) 452
BsrFI RCCGGY 1 cut(s) 394
BsrI ACTGG 1 cut(s) 162
BssAI RCCGGY 1 cut(s) 394
BssECI CCNNGG 3 cut(s) 58, 148, 442
BssMI GATC 3 cut(s) 3, 47, 118
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 149
Bst6I CTCTTC 1 cut(s) 216
BstACI GRCGYC 1 cut(s) 243
BstAPI GCANNNNNTGC 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 67, 310
BstDSI CCRYGG 1 cut(s) 58
BstEII GGTNACC 1 cut(s) 202
BstENI CCTNNNNNAGG 1 cut(s) 25
BstF5I GGATG 4 cut(s) 79, 89, 166, 256
BstKTI GATC 3 cut(s) 6, 50, 121
BstMAI GTCTC 1 cut(s) 452
BstMBI GATC 3 cut(s) 3, 47, 118
BstMWI GCNNNNNNNGC 1 cut(s) 309
BstNI CCWGG 1 cut(s) 149
BstNSI RCATGY 2 cut(s) 180, 406
BstPI GGTNACC 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 347
BstX2I RGATCY 1 cut(s) 47
BstYI RGATCY 1 cut(s) 47
BsuRI GGCC 2 cut(s) 57, 234
BtgI CCRYGG 1 cut(s) 58
BtsCI GGATG 4 cut(s) 79, 89, 166, 256
BtsI GCAGTG 3 cut(s) 187, 310, 366
BtsIMutI CAGTG 3 cut(s) 187, 310, 366
Cac8I GCNNGC 2 cut(s) 67, 310
Cfr10I RCCGGY 1 cut(s) 394
Csp6I GTAC 1 cut(s) 155
CviAII CATG 7 cut(s) 59, 70, 177, 236, 247, 403, 469
CviQI GTAC 1 cut(s) 155
DpnI GATC 3 cut(s) 5, 49, 120
DpnII GATC 3 cut(s) 3, 47, 118
EaeI YGGCCR 2 cut(s) 55, 232
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Ecl136II GAGCTC 1 cut(s) 510
Eco130I CCWWGG 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 512
Eco31I GGTCTC 1 cut(s) 452
Eco53kI GAGCTC 1 cut(s) 510
Eco57I CTGAAG 2 cut(s) 245, 464
Eco88I CYCGRG 1 cut(s) 449
Eco91I GGTNACC 1 cut(s) 202
EcoICRI GAGCTC 1 cut(s) 510
EcoNI CCTNNNNNAGG 1 cut(s) 25
EcoO65I GGTNACC 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 512
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 7 cut(s) 62, 73, 180, 239, 250, 406, 472
FaiI YATR 8 cut(s) 60, 71, 178, 237, 248, 278, 404, 470
FatI CATG 7 cut(s) 58, 69, 176, 235, 246, 402, 468
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 7 cut(s) 55, 109, 137, 222, 232, 313, 336
FokI GGATG 4 cut(s) 86, 96, 173, 263
FriOI GRGCYC 1 cut(s) 512
Fsp4HI GCNGC 7 cut(s) 55, 109, 137, 222, 232, 313, 336
FspBI CTAG 1 cut(s) 285
GluI GCNGC 7 cut(s) 55, 109, 137, 222, 232, 313, 336
GsaI CCCAGC 1 cut(s) 302
HaeIII GGCC 2 cut(s) 57, 234
HapII CCGG 2 cut(s) 51, 395
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 7 cut(s) 62, 73, 180, 239, 250, 406, 472
HincII GTYRAC 2 cut(s) 241, 400
HindII GTYRAC 2 cut(s) 241, 400
HinfI GANTC 2 cut(s) 88, 319
HpaII CCGG 2 cut(s) 51, 395
HphI GGTGA 4 cut(s) 128, 142, 196, 206
Hpy166II GTNNAC 3 cut(s) 155, 241, 400
Hpy188III TCNNGA 2 cut(s) 195, 449
Hpy8I GTNNAC 3 cut(s) 155, 241, 400
HpyCH4IV ACGT 2 cut(s) 243, 491
HpyCH4V TGCA 3 cut(s) 180, 335, 406
HpyF10VI GCNNNNNNNGC 1 cut(s) 309
HpySE526I ACGT 2 cut(s) 243, 491
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 7 cut(s) 62, 73, 180, 239, 250, 406, 472
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 47, 118
LmnI GCTCC 1 cut(s) 62
Lsp1109I GCAGC 1 cut(s) 347
LweI GCATC 1 cut(s) 271
MaeI CTAG 1 cut(s) 285
MaeII ACGT 2 cut(s) 243, 491
MaeIII GTNAC 1 cut(s) 202
MalI GATC 3 cut(s) 5, 49, 120
MboI GATC 3 cut(s) 3, 47, 118
MboII GAAGA 1 cut(s) 203
MflI RGATCY 1 cut(s) 47
MhlI GDGCHC 1 cut(s) 512
MlyI GAGTC 2 cut(s) 82, 313
MseI TTAA 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 298
MspI CCGG 2 cut(s) 51, 395
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 309
NcoI CCATGG 1 cut(s) 58
NdeII GATC 3 cut(s) 3, 47, 118
NlaIII CATG 7 cut(s) 62, 73, 180, 239, 250, 406, 472
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 202
NspI RCATGY 2 cut(s) 180, 406
PaeR7I CTCGAG 1 cut(s) 449
PkrI GCNGC 7 cut(s) 56, 110, 138, 223, 233, 314, 337
PleI GAGTC 2 cut(s) 82, 313
PpsI GAGTC 2 cut(s) 82, 313
Psp124BI GAGCTC 1 cut(s) 512
Psp6I CCWGG 1 cut(s) 147
PspEI GGTNACC 1 cut(s) 202
PspFI CCCAGC 1 cut(s) 298
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 64
PsuI RGATCY 1 cut(s) 47
PvuII CAGCTG 1 cut(s) 298
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
SacI GAGCTC 1 cut(s) 512
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 7 cut(s) 55, 109, 137, 222, 232, 313, 336
Sau3AI GATC 3 cut(s) 3, 47, 118
SchI GAGTC 2 cut(s) 82, 313
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 1 cut(s) 512
SetI ASST 8 cut(s) 23, 132, 219, 246, 300, 419, 494, 512
SfaNI GCATC 1 cut(s) 271
Sfr274I CTCGAG 1 cut(s) 449
SlaI CTCGAG 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
SsiI CCGC 7 cut(s) 54, 109, 136, 222, 231, 312, 323
SspMI CTAG 1 cut(s) 285
SstI GAGCTC 1 cut(s) 512
StyD4I CCNGG 1 cut(s) 147
StyI CCWWGG 1 cut(s) 58
TaiI ACGT 2 cut(s) 246, 494
TaqI TCGA 1 cut(s) 450
TaqII GACCGA 1 cut(s) 434
TatI WGTACW 1 cut(s) 154
TauI GCSGC 6 cut(s) 57, 111, 139, 224, 234, 315
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 3 cut(s) 187, 310, 366
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 1 cut(s) 335
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 1 cut(s) 485
TspRI CASTG 3 cut(s) 187, 310, 366
XagI CCTNNNNNAGG 1 cut(s) 25
XceI RCATGY 2 cut(s) 180, 406
XhoI CTCGAG 1 cut(s) 449
XspI CTAG 1 cut(s) 285
ZraI GACGTC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.