Rorug07G0145200

ankyrin repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0005106
Physical Location & Seq
Forward (+)
11440112 .. 11440594
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0145200.1

Sequence Viewer

Length: 261 bp
ATGAAGATCATGAGTACTGCAAACCATGTTTTCGCTATGCCCCGGCTGGGATCAAACAACCAGACGAGCAACAACAGCAAGATGTGTAGTTTCCAGATGCCGCTGCACTACCCAAGGTACCAGAAGAGTGACTATGAGGCCATGCCTGAGTGGAAACTGGACTGCCTCTTGAAACAGTATGGCCTCCCAGTCATTGGAGATGTCAACCAAAAGAGGAAGTTTGCAATGGGGGCCTTCCTTTGGCCTTCACAGTATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000278 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0001508 GO:0001932 GO:0001933 GO:0002028 GO:0003008 GO:0003254 GO:0003674 GO:0003824 GO:0004842 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005783 GO:0005794 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0006810 GO:0006888 GO:0006892 GO:0006893 GO:0006996 GO:0007009 GO:0007010 GO:0007016 GO:0007049 GO:0007154 GO:0007275 GO:0007399 GO:0007409 GO:0007528 GO:0008037 GO:0008092 GO:0008104 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009553 GO:0009566 GO:0009567 GO:0009628 GO:0009639 GO:0009642 GO:0009644 GO:0009653 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009962 GO:0009963 GO:0009986 GO:0009987 GO:0009988 GO:0010033 GO:0010035 GO:0010038 GO:0010218 GO:0010256 GO:0010313 GO:0010468 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0010647 GO:0010649 GO:0010650 GO:0010765 GO:0010959 GO:0010960 GO:0012505 GO:0014704 GO:0014731 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0016328 GO:0016528 GO:0016529 GO:0016567 GO:0016740 GO:0019220 GO:0019222 GO:0019226 GO:0019228 GO:0019538 GO:0019787 GO:0019899 GO:0019953 GO:0022008 GO:0022402 GO:0022407 GO:0022409 GO:0022412 GO:0022414 GO:0022607 GO:0022898 GO:0023052 GO:0030016 GO:0030017 GO:0030018 GO:0030030 GO:0030054 GO:0030154 GO:0030155 GO:0030182 GO:0030315 GO:0030424 GO:0030425 GO:0030507 GO:0030674 GO:0031175 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031537 GO:0031539 GO:0031540 GO:0031542 GO:0031594 GO:0031625 GO:0031674 GO:0032026 GO:0032268 GO:0032269 GO:0032386 GO:0032388 GO:0032409 GO:0032410 GO:0032411 GO:0032412 GO:0032413 GO:0032414 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032507 GO:0032879 GO:0032880 GO:0032989 GO:0032990 GO:0032991 GO:0033036 GO:0033157 GO:0033267 GO:0033268 GO:0034110 GO:0034112 GO:0034285 GO:0034613 GO:0034762 GO:0034763 GO:0034764 GO:0034765 GO:0034766 GO:0034767 GO:0035637 GO:0036211 GO:0036477 GO:0042221 GO:0042325 GO:0042326 GO:0042383 GO:0042391 GO:0042592 GO:0042886 GO:0042995 GO:0043001 GO:0043005 GO:0043034 GO:0043170 GO:0043194 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043266 GO:0043267 GO:0043269 GO:0043270 GO:0043271 GO:0043292 GO:0043412 GO:0044085 GO:0044091 GO:0044092 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044291 GO:0044304 GO:0044325 GO:0044389 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044456 GO:0044459 GO:0044463 GO:0044464 GO:0044703 GO:0045026 GO:0045184 GO:0045185 GO:0045202 GO:0045211 GO:0045296 GO:0045760 GO:0045785 GO:0045838 GO:0045936 GO:0046907 GO:0048193 GO:0048229 GO:0048468 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050808 GO:0050839 GO:0050877 GO:0050896 GO:0051049 GO:0051050 GO:0051051 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051235 GO:0051246 GO:0051248 GO:0051301 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051716 GO:0055065 GO:0055080 GO:0060090 GO:0060255 GO:0060341 GO:0061024 GO:0061025 GO:0061564 GO:0061640 GO:0061936 GO:0061951 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070647 GO:0070727 GO:0070887 GO:0071241 GO:0071248 GO:0071286 GO:0071702 GO:0071704 GO:0071705 GO:0071709 GO:0071840 GO:0071944 GO:0072507 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080090 GO:0080173 GO:0090087 GO:0090150 GO:0090313 GO:0090314 GO:0090316 GO:0097060 GO:0097447 GO:0097458 GO:0098590 GO:0098771 GO:0098794 GO:0098876 GO:0098900 GO:0098901 GO:0098902 GO:0099080 GO:0099081 GO:0099512 GO:0120025 GO:0120036 GO:0120038 GO:0120039 GO:0140096 GO:1900825 GO:1900827 GO:1901016 GO:1901017 GO:1901379 GO:1901380 GO:1901564 GO:1901700 GO:1902259 GO:1902260 GO:1902305 GO:1902307 GO:1902494 GO:1903047 GO:1903533 GO:1903817 GO:1903827 GO:1903829 GO:1904062 GO:1904063 GO:1904064 GO:1904181 GO:1904951 GO:1905475 GO:1905477 GO:1990234 GO:1990778 GO:2000649 GO:2000651 GO:2001257 GO:2001258 GO:2001259
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_3 Ank_4

Protein Analysis

86

Amino Acids

10.04

Weight (kDa)

9.23

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 37 - 82 8.5e-30 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 117
AccB1I GGYRCC 1 cut(s) 117
AccB7I CCANNNNNTGG 1 cut(s) 194
AciI CCGC 1 cut(s) 101
AclWI GGATC 1 cut(s) 58
AfaI GTAC 2 cut(s) 16, 119
AfiI CCNNNNNNNGG 3 cut(s) 47, 194, 240
AgsI TTSAA 1 cut(s) 172
AlwI GGATC 1 cut(s) 58
AoxI GGCC 4 cut(s) 138, 181, 231, 242
ApeKI GCWGC 1 cut(s) 103
Asp718I GGTACC 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 231
AsuC2I CCSGG 1 cut(s) 43
BanI GGYRCC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 90
BcnI CCSGG 1 cut(s) 43
BisI GCNGC 2 cut(s) 101, 104
BlsI GCNGC 2 cut(s) 102, 105
BmcAI AGTACT 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 231
BmiI GGNNCC 2 cut(s) 119, 232
BmrFI CCNGG 1 cut(s) 43
BmrI ACTGGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 87
BmuI ACTGGG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 43
BsaJI CCNNGG 2 cut(s) 41, 113
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 194, 240
Bse1I ACTGG 2 cut(s) 162, 188
Bse3DI GCAATG 1 cut(s) 231
BseDI CCNNGG 2 cut(s) 41, 113
BseLI CCNNNNNNNGG 3 cut(s) 47, 194, 240
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 2 cut(s) 162, 188
BseXI GCAGC 1 cut(s) 90
BseYI CCCAGC 1 cut(s) 46
BsgI GTGCAG 1 cut(s) 89
BshFI GGCC 4 cut(s) 140, 183, 233, 244
BshNI GGYRCC 1 cut(s) 117
BsiSI CCGG 1 cut(s) 43
BslI CCNNNNNNNGG 3 cut(s) 47, 194, 240
BsnI GGCC 4 cut(s) 140, 183, 233, 244
Bsp143I GATC 2 cut(s) 6, 50
BspACI CCGC 1 cut(s) 101
BspANI GGCC 4 cut(s) 140, 183, 233, 244
BspCNI CTCAG 1 cut(s) 139
BspHI TCATGA 1 cut(s) 9
BspLI GGNNCC 2 cut(s) 119, 232
BspPI GGATC 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 117
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 2 cut(s) 162, 188
BssECI CCNNGG 2 cut(s) 41, 113
BssMI GATC 2 cut(s) 6, 50
BssT1I CCWWGG 1 cut(s) 113
Bst4CI ACNGT 2 cut(s) 177, 252
Bst6I CTCTTC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 147
BstKTI GATC 2 cut(s) 9, 53
BstMBI GATC 2 cut(s) 6, 50
BstMWI GCNNNNNNNGC 2 cut(s) 75, 230
BstSCI CCNGG 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 90
BsuRI GGCC 4 cut(s) 140, 183, 233, 244
CciI TCATGA 1 cut(s) 9
Cfr13I GGNCC 1 cut(s) 231
Csp6I GTAC 2 cut(s) 15, 118
CviAII CATG 3 cut(s) 10, 26, 142
CviJI RGCY 5 cut(s) 46, 140, 183, 233, 244
CviKI_1 RGCY 5 cut(s) 46, 140, 183, 233, 244
CviQI GTAC 2 cut(s) 15, 118
DdeI CTNAG 1 cut(s) 147
DpnI GATC 2 cut(s) 8, 52
DpnII GATC 2 cut(s) 6, 50
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 3 cut(s) 13, 29, 145
FaiI YATR 7 cut(s) 11, 27, 38, 135, 143, 180, 255
FatI CATG 3 cut(s) 9, 25, 141
Fnu4HI GCNGC 2 cut(s) 101, 104
Fsp4HI GCNGC 2 cut(s) 101, 104
GluI GCNGC 2 cut(s) 101, 104
GsaI CCCAGC 1 cut(s) 50
HaeIII GGCC 4 cut(s) 140, 183, 233, 244
HapII CCGG 1 cut(s) 43
Hin1II CATG 3 cut(s) 13, 29, 145
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HpaII CCGG 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 205
Hpy188III TCNNGA 3 cut(s) 10, 94, 169
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 2 cut(s) 244, 255
HpyCH4III ACNGT 2 cut(s) 177, 252
HpyCH4V TGCA 3 cut(s) 20, 106, 224
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 230
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 3 cut(s) 13, 29, 145
KpnI GGTACC 1 cut(s) 121
Kzo9I GATC 2 cut(s) 6, 50
LpnPI CCDG 8 cut(s) 32, 56, 74, 107, 134, 143, 159, 201
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 128
MalI GATC 2 cut(s) 8, 52
MboI GATC 2 cut(s) 6, 50
MboII GAAGA 2 cut(s) 16, 136
MnlI CCTC 4 cut(s) 130, 176, 194, 207
MspA1I CMGCKG 1 cut(s) 103
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 43
MwoI GCNNNNNNNGC 2 cut(s) 75, 230
NciI CCSGG 1 cut(s) 43
NdeII GATC 2 cut(s) 6, 50
NlaIII CATG 3 cut(s) 13, 29, 145
NlaIV GGNNCC 2 cut(s) 119, 232
NmuCI GTSAC 1 cut(s) 128
PagI TCATGA 1 cut(s) 9
PflMI CCANNNNNTGG 1 cut(s) 194
PkrI GCNGC 2 cut(s) 102, 105
PspFI CCCAGC 1 cut(s) 46
PspN4I GGNNCC 2 cut(s) 119, 232
PspPI GGNCC 1 cut(s) 231
RsaI GTAC 2 cut(s) 16, 119
RsaNI GTAC 2 cut(s) 15, 118
SatI GCNGC 2 cut(s) 101, 104
Sau3AI GATC 2 cut(s) 6, 50
Sau96I GGNCC 1 cut(s) 231
ScaI AGTACT 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 43
SetI ASST 1 cut(s) 119
SfaNI GCATC 1 cut(s) 87
SsiI CCGC 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 2 cut(s) 177, 252
TatI WGTACW 1 cut(s) 14
TauI GCSGC 1 cut(s) 103
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 194
ZrmI AGTACT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.